mRNA_P-wetherbeei_contig6384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6384.1.1
Unique NamemRNA_P-wetherbeei_contig6384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6384.1.1 vs. uniprot
Match: D8LIL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL4_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.870e-44
Identity = 83/132 (62.88%), Postives = 102/132 (77.27%), Query Frame = 1 
Query:   10 PEANNARKLVKPLYAFEAGMRAFLVGAPRLLAKHFPSFPRVTSLVFMYMMLQVLALLWAFLLNAASSVTLDVSSLAARHALDFSFHFTDIAGAFASFLSTYYTFRVLSRFGRAVGVIAWESLDDFPDARRVV 405
            P A+  R+ +KP+Y FE+ +R +LV APR+L+K FPSF R  SL+FMYMM QVLA+L AFLLNA  SVTLD+S LAA+HA DFS +   IA  FA+F  TY T RV  RFG+A+GVIAWESLDDFPDAR++V
Sbjct:   21 PGASRVRQAIKPIYLFESTIRTWLVHAPRVLSKRFPSFNRTISLLFMYMMFQVLAILGAFLLNAICSVTLDISGLAAKHAFDFSLN-RSIAHGFATFYVTYSTIRVFVRFGQAIGVIAWESLDDFPDARKIV 151
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BLAST of mRNA_P-wetherbeei_contig6384.1.1 vs. uniprot
Match: A0A6H5KWB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.220e-29
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:   10 PEANNARKLVKPLYAFEAGMRAFLVGAPRLLAKHFPSFPRVTSLVFMYMMLQVLALLWAFLLNAASSVTLDVSSLAARHALDFSFHFTDIAGAFASFLSTYYTFR 324
            P A+  R+ +KP+Y FE+ +R +LV APR+L+K FPSF R  SL+FMYMM QVLA+L AFLLNA  SVTLD+S LAA+HA DFS +   IA  FA+F  TY T R
Sbjct:   21 PGASRVRQAIKPIYLFESTIRTWLVHAPRVLSKRFPSFNRTISLLFMYMMFQVLAILGAFLLNAICSVTLDISGLAAKHAFDFSLN-RSIAHGFATFYVTYSTIR 124
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BLAST of mRNA_P-wetherbeei_contig6384.1.1 vs. uniprot
Match: A0A835YVP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.380e-22
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:  166 VLALLWAFLLNAASSVTLDVSSLAARHALDFSFHFTDIAGAFASFLSTYYTFRVLSRFGRAVGVIAWESLDDFPDARR 399
            VLALLWAFLLNAASSV LDVS LAARHALDFS +   +  AFA+F   Y TFRV +RFG  +G+IAWESLDDFP A R
Sbjct:    4 VLALLWAFLLNAASSVALDVSGLAARHALDFSLY-VSLVRAFATFYVVYGTFRVFARFGSNIGLIAWESLDDFPHACR 80
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BLAST of mRNA_P-wetherbeei_contig6384.1.1 vs. uniprot
Match: A0A7S1TXJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXJ3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.260e-10
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  127 RVTSLVFMYMMLQVLALLWAFLLNAASSVTLDVSS--LAARHALDFSFHFTDIAGAFASFLSTYYTFRVLSRFGRAVGVIAWESLDDFPDARRVV 405
            ++ S +F Y+M QVLAL+WAFL+N+  +V LD+++  L     ++      D   AFA+F   Y TFR + RFG  V  +AWES DD   A+RVV
Sbjct:   36 KLISSIFAYIMFQVLALVWAFLINSGVTVALDLANYLLTGPRLVE-----VDKRMAFATFYFFYATFRTVLRFGGVVAAVAWESFDD-AQAKRVV 124
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BLAST of mRNA_P-wetherbeei_contig6384.1.1 vs. uniprot
Match: A0A0P1AMY0_PLAHL (Transmembrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMY0_PLAHL)

HSP 1 Score: 54.7 bits (130), Expect = 5.440e-6
Identity = 34/126 (26.98%), Postives = 61/126 (48.41%), Query Frame = 1 
Query:   28 RKLVKPLYAFEAGMRAFLVGAPRLLAKHFPSFPRVTSLVFMYMMLQVLALLWAFLLNAASSVTLDVSSLAARHALDFSFHFTDIAGAFASFLSTYYTFRVLSRFGRAVGVIAWESLDDFPDARRVV 405
            R+  + +  +E  +R   V  P+   K   S   + S  F+Y+MLQ LA+ W FL N  + +  ++S +        +  FT        ++S      ++  FGRA+ ++ W+SL +FP  RR++
Sbjct:   26 RRYFEGILRWEMALRLMFVSFPKEALKRIESSRTIVSFFFVYVMLQALAIFWGFLFNVGAVLGENMSKI-------ITMPFTQAVCVLMVYVSV---MGIVLSFGRAMWILTWQSLQNFPLIRRII 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LIL4_ECTSI3.870e-4462.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWB8_9PHAE8.220e-2959.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVP4_9STRA7.380e-2270.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TXJ3_9STRA2.260e-1043.16Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0P1AMY0_PLAHL5.440e-626.98Transmembrane protein n=1 Tax=Plasmopara halstedii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6384contigP-wetherbeei_contig6384:20..617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo137472
PFAMsLipase_3
Model size405
Max annot lvl4776|Peronosporales
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
Hectar predicted targeting categorysignal anchor
Exons3
Evalue2.25e-08
EggNOG OGs2DUDU@1|root,2QVZS@2759|Eukaryota,3Q7BU@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004290.1
EC3.1.1.3
DescriptionLipase (class 3)
Cds size405
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186909.139455-CDS-P-wetherbeei_contig6384:19..1641683186909.139455-CDS-P-wetherbeei_contig6384:19..164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6384 20..164 -
1683186909.1502452-CDS-P-wetherbeei_contig6384:251..3461683186909.1502452-CDS-P-wetherbeei_contig6384:251..346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6384 252..346 -
1683186909.158948-CDS-P-wetherbeei_contig6384:452..6171683186909.158948-CDS-P-wetherbeei_contig6384:452..617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6384 453..617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6384.1.1prot_P-wetherbeei_contig6384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6384 20..617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6384.1.1

>prot_P-wetherbeei_contig6384.1.1 ID=prot_P-wetherbeei_contig6384.1.1|Name=mRNA_P-wetherbeei_contig6384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MKEPEANNARKLVKPLYAFEAGMRAFLVGAPRLLAKHFPSFPRVTSLVFM
YMMLQVLALLWAFLLNAASSVTLDVSSLAARHALDFSFHFTDIAGAFASF
LSTYYTFRVLSRFGRAVGVIAWESLDDFPDARRVV
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mRNA from alignment at P-wetherbeei_contig6384:20..617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6384.1.1 ID=mRNA_P-wetherbeei_contig6384.1.1|Name=mRNA_P-wetherbeei_contig6384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=598bp|location=Sequence derived from alignment at P-wetherbeei_contig6384:20..617- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGAGCCGGAAGCAAACAACGCGAGGAAGTTGGTAAAACCGCTATA
TGCCTTCGAGGCAGGCATGCGGGCCTTCCTTGTTGGGGCGCCACGCCTTT
TAGCGAAGCACTTTCCCTCCTTCCCACGTGTCACAAGCTTGGTTTTTATG
TACATGATGTTGCAGGTAAGCGGACAGATGTTTGAGGCTGTTCATCTGCA
CGCGAGGCGGCAAAGACCTTTTTACTTTTTTAAGACTGACTACCCCAATG
CATCTGCCATCGCTGTTACAGGTGCTCGCTCTCCTCTGGGCATTCCTGCT
CAACGCTGCATCGAGCGTTACGCTCGACGTGTCGTCTCTCGCCGCGCGAC
ACGCTCTTGATTTCAGGTGAGAAATTGAGGCATGATCTCCCTTTGCAATA
TCCATGGGTAACCAGCAAGAACCCTTTCCCATTCCCCGCTTCCCTCGGTG
CAGCTTTCACTTCACCGACATCGCGGGGGCCTTTGCCTCCTTCCTTTCCA
CGTACTACACGTTTCGGGTGCTGTCGCGCTTTGGCCGCGCCGTCGGCGTC
ATCGCATGGGAGTCGCTCGACGACTTTCCCGACGCGCGGCGCGTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6384:20..617-

>mRNA_P-wetherbeei_contig6384.1.1 ID=mRNA_P-wetherbeei_contig6384.1.1|Name=mRNA_P-wetherbeei_contig6384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig6384:20..617- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGAGCCGGAAGCAAACAACGCGAGGAAGTTGGTAAAACCGCTATA
TGCCTTCGAGGCAGGCATGCGGGCCTTCCTTGTTGGGGCGCCACGCCTTT
TAGCGAAGCACTTTCCCTCCTTCCCACGTGTCACAAGCTTGGTTTTTATG
TACATGATGTTGCAGGTGCTCGCTCTCCTCTGGGCATTCCTGCTCAACGC
TGCATCGAGCGTTACGCTCGACGTGTCGTCTCTCGCCGCGCGACACGCTC
TTGATTTCAGCTTTCACTTCACCGACATCGCGGGGGCCTTTGCCTCCTTC
CTTTCCACGTACTACACGTTTCGGGTGCTGTCGCGCTTTGGCCGCGCCGT
CGGCGTCATCGCATGGGAGTCGCTCGACGACTTTCCCGACGCGCGGCGCG
TGGTG
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