mRNA_P-wetherbeei_contig637.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig637.3.1
Unique NamemRNA_P-wetherbeei_contig637.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A0G4GM29_9ALVE (3'-5' exonuclease domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GM29_9ALVE)

HSP 1 Score: 84.7 bits (208), Expect = 6.840e-13
Identity = 54/115 (46.96%), Postives = 69/115 (60.00%), Query Frame = 1 
Query: 1372 CVVIGYGLEGDLKRLRESYPSVSALLSPPCYSFDVQSYAASARGVAFVGSGTWPP-----RGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPALMLG 1701
            CVV+G+GL  DL+RLR+SYPSV+A L       D+       R VA V     PP     +GGLS +  +++  R+DKG+Q SDW  RPL+ AQL YAA DA V L +V   MLG
Sbjct: 1417 CVVVGFGLAVDLQRLRQSYPSVAAFLIEVPRVLDL-------RLVAHV---VLPPSSQKQKGGLSAVCASVLGRRVDKGEQRSDWAQRPLSEAQLEYAALDAFVCL-VVSVQMLG 1520
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A2K3DAS7_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DAS7_CHLRE)

HSP 1 Score: 80.5 bits (197), Expect = 9.170e-12
Identity = 64/214 (29.91%), Postives = 96/214 (44.86%), Query Frame = 1 
Query: 1144 PVALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLAEAEAVLSALAATVFGPFCVVIGYGLEGDLKRLRESYPSVSALLSP------------------------------PCYSFDVQSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPALM 1695
            PV++LQ+ T + +Y++DLLQL+RP              DS  +++ D   GGG         AV   L+A +  P  VV+G+ L+ DL RL+ESYP +     P                              PC   D+ + A + R           P+  L+ L   ++   +DK QQ SDW  RPL+ +QL+YAA D   L+ +  AL+
Sbjct:  542 PVSILQVGTRDRIYIVDLLQLLRP--------------DSPAAAADDGKRGGGRA-------AVSDFLSAVLCSPRVVVVGFQLQSDLDRLQESYPHLPCFQPPSVPAASSVRXXXXXXXXXXXXXXXAGAVVVPCMCVDLVTLARALRPDLLR-----TPQISLTRLVNMVLGKPLDKEQQRSDWAARPLSESQLAYAAADVACLVSVFDALV 729
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A8J4EZA1_9CHLO (3'-5' exonuclease domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EZA1_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 4.310e-11
Identity = 80/223 (35.87%), Postives = 105/223 (47.09%), Query Frame = 1 
Query: 1150 ALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLA------EAEAVLSALAATVFGPF-CVVIGYGLEGDLKRLRESYPSVSAL--LSPPCYSFDV-------QSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPA----LMLGPDERKAAFDSSTSLTDAAG 1758
            ALLQ+AT E   L DL                AL  DS+G+++   + GG     LA      + ++VLS L    FG    +V+G+GL GDL +L  SYP V A   +      +D+       Q+ A   +    V       + GLS LA  L+   +DK  Q SDW  RPL+P QL+YAA DA VLLRL  A    L  G  ER AA  + T +   AG
Sbjct:  561 ALLQVATHEVAVLFDL---------------PALCGDSTGTAAAGAAPGGLPAAALAPPVPDLDIDSVLSPL----FGQGGALVLGFGLAGDLAKLASSYPHVVAFQQVGATLDLYDMWKAYVTAQAQATRPKNAPPVSLSARAFQAGLSTLAATLLGKPLDKAMQVSDWEARPLSPRQLTYAAQDAHVLLRLWDAFHDRLPEGLAERVAAEKTQTFVAGTAG 764
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A8J4B7Q3_9CHLO (Uncharacterized protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B7Q3_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 5.080e-11
Identity = 80/223 (35.87%), Postives = 105/223 (47.09%), Query Frame = 1 
Query: 1150 ALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLA------EAEAVLSALAATVFGPF-CVVIGYGLEGDLKRLRESYPSVSAL--LSPPCYSFDV-------QSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPA----LMLGPDERKAAFDSSTSLTDAAG 1758
            ALLQ+AT E   L DL                AL  DS+G+++   + GG     LA      + ++VLS L    FG    +V+G+GL GDL +L  SYP V A   +      +D+       Q+ A   +    V       + GLS LA  L+   +DK  Q SDW  RPL+P QL+YAA DA VLLRL  A    L  G  ER AA  + T +   AG
Sbjct:  561 ALLQVATHEVAVLFDL---------------PALCGDSTGTAAAGAAPGGLPAAALAPPVPDLDIDSVLSPL----FGQGGALVLGFGLAGDLAKLASSYPHVVAFQQVGATLDLYDMWKAYVTAQAQATRPKNAPPVSLSARAFQAGLSTLAATLLGKPLDKAMQVSDWEARPLSPRQLTYAAQDAHVLLRLWDAFHDRLPEGLAERVAAEKTQTFVAGTAG 764
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A835Y198_9CHLO (Uncharacterized protein n=2 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y198_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 5.090e-11
Identity = 69/202 (34.16%), Postives = 97/202 (48.02%), Query Frame = 1 
Query: 1129 GGRMEPVALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDG----GGSGGDLAEAEAVLSALAATVFGPF-CVVIGYGLEGDLKRLRESYPSVSALLSPPCYSFDVQ----------SYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPA 1689
            GG  E  +LLQ+AT ++  L DL  L             A G    G  +RD+  G    G +  DL +++  +  +   +FGP   +VIG+GL GDL +L  SYP V+A       + D+Q          + A+  +    V       + GLS LA  L+   +DK  Q SDW  RPLT  Q++YAA DA VL+RL  A
Sbjct:  671 GGTGERASLLQIATRDAAMLFDLPALC------------AGGASGGGRPNRDQEAGSVPTGPADRDL-DSDLDIDDVLGPLFGPGGALVIGFGLSGDLSKLASSYPHVAAFRRLEA-TLDLQELWRAHLVAQAQASRPKNAPPVQLPARSMQAGLSTLAAGLLGRPLDKTMQVSDWEARPLTVRQMTYAAQDAHVLVRLYDA 858
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A835T3H5_CHLIN (Uncharacterized protein n=2 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T3H5_CHLIN)

HSP 1 Score: 78.2 bits (191), Expect = 6.660e-11
Identity = 67/190 (35.26%), Postives = 89/190 (46.84%), Query Frame = 1 
Query: 1144 PVALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLAEAEAVLSAL-AATVFGPFCVVIGYGLEGDLKRLRESYPSVSALLSPPCYSFDV----------QSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRL 1680
            P ALLQ+AT+E   L DL+ L  P S+               ++S                +AVL  L + T     C+V+G+GL GDL +L  SYP+V A       S DV          Q+ AA  +G   V       + GLS LA  L+   +DK  Q SDW  RPL+  Q++YAA DA VL+RL
Sbjct:  588 PAALLQVATAEWAVLFDLIALCGPGSSSXXXXXXXXXXXXXATAS--------------PLDAVLLPLFSRTPAEGGCLVLGFGLSGDLAKLSGSYPAVRAFRRVAA-SLDVWELWRAHLIAQAQAARPKGAPPVQLPARAFQAGLSTLAAGLLGQPLDKTMQVSDWEARPLSARQVTYAAQDAHVLVRL 762
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A6U6JDC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6JDC2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-10
Identity = 67/199 (33.67%), Postives = 90/199 (45.23%), Query Frame = 1 
Query: 1132 GRMEPVALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLAEAEAVLS-ALAATVFGPFCVVIGYGLEGDLKRLRESYPSVSALLSPPCYSF-----DVQSYAASARGVAFVGSGTWPPRGGLSGLAVA---LVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPALMLG 1701
            GR  PV+ LQLAT    +L+DL  L R R  DD+                             EAE  LS AL   +  P   V+G+G+  D+ +L  SYP +S      C+       D++  A + R  A        PR  +S LA A   ++R R+DK QQ SDWG RPL+  Q+ YA  DA VL  L+  +  G
Sbjct:  664 GRDHPVSTLQLATRRRSFLVDLQTLCRQRVGDDSIPP-------------------------TEAEGRLSDALGRLLSDPDVAVVGFGIGQDIAKLAASYPHLS------CFRLFESVVDLEPLAKTVRPHA--------PRHYMSSLAKAAAIVLRRRLDKSQQCSDWGRRPLSAEQVEYALLDAAVLPLLLGEMTSG 823
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A485L881_9STRA (Aste57867_17691 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L881_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.230e-10
Identity = 58/180 (32.22%), Postives = 82/180 (45.56%), Query Frame = 1 
Query: 1141 EPVALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLAEAEAVLSALAATVFGPFCVVIGYGLEGDLKRLRESYPSVSALLSPPCYSFDVQSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRL 1680
            E V L+QLA S++VY++D + L      D++ +D  L                           V + LA     P  ++ G+ + GD+ RLR +YPS+        +S  V S     R +A    G      GL+ L    +   ++K QQ SDWGLRPLTP QL YAA+DA    RL
Sbjct:  727 ERVQLIQLAFSDTVYILDAVAL------DNHGADRPL---------------------------VETVLALIFNSPRFILAGFCVAGDIHRLRATYPSLD-------HSCPVLSNCVEVRRLAVARVGDNVSSWGLAALVSTYLGQTIEKDQQCSDWGLRPLTPEQLRYAAEDAQCARRL 866
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A2K3E0R8_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E0R8_CHLRE)

HSP 1 Score: 75.1 bits (183), Expect = 5.950e-10
Identity = 64/194 (32.99%), Postives = 87/194 (44.85%), Query Frame = 1 
Query: 1144 PVALLQLATSESVYLIDLLQLVRPRSTDDNASDDALGVDSSGSSSRDESDGGGSGGDLAEAEAVLSALAATVFGPF-----CVVIGYGLEGDLKRLRESYPSVSALLSPPCYSFDV----------QSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRL 1680
            P ALLQ+AT++   L DL+ L  P S+                             D   A   L A+   +F        C+V+G+GL GDL +L  SYP+V+A       + DV          Q+ AA  +G   V       + GLS LA  L+   +DK  Q SDW  RPL+  Q++YAA DA VL+RL
Sbjct:  593 PAALLQVATADWAVLFDLIALCGPGSSXXXXXXXXXXXXXXXX-------------DATAATTPLDAVLLPLFSRTPAEGGCLVLGFGLSGDLAKLSGSYPAVAAFRRVAA-TLDVWELWRAHLIAQAQAARPKGAPPVQLPARAFQAGLSTLAAGLLGKPLDKTMQVSDWEARPLSARQMTYAAQDAHVLVRL 772
[Close]
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Match: A0A8J4FW09_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FW09_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 7.240e-10
Identity = 56/155 (36.13%), Postives = 79/155 (50.97%), Query Frame = 1 
Query: 1336 LSALAATVFGPF-CVVIGYGLEGDLKRLRESYPSVSAL--LSPPCYSFDV-------QSYAASARGVAFVGSGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALVLLRLVPA----LMLGPDERKAAFDSSTSLTDAAG 1758
            ++++ A +FG    +V+G+GL GDL +L  SYP V+A   +      +D+       Q+ A   R    V       + GL+ LA  L+   +DK  Q SDW  RPL+P Q++YAA DA VLLRL  A    L  G  ER AA  +   +   AG
Sbjct:   60 INSVLAPLFGQGGALVLGFGLAGDLAKLASSYPHVAAFQRVGATLDLYDMWKAYVTAQAQATRPRNAPPVSLSARAFQAGLTTLAATLLGKPLDKAMQVSDWEARPLSPRQMTYAAQDAHVLLRLWDAFHNRLPEGLAERVAAEKTQPFVAGTAG 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig637.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4GM29_9ALVE6.840e-1346.963'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2K3DAS7_CHLRE9.170e-1229.91Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4EZA1_9CHLO4.310e-1135.873'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8J4B7Q3_9CHLO5.080e-1135.87Uncharacterized protein n=3 Tax=Volvox africanus T... [more]
A0A835Y198_9CHLO5.090e-1134.16Uncharacterized protein n=2 Tax=Edaphochlamys deba... [more]
A0A835T3H5_CHLIN6.660e-1135.26Uncharacterized protein n=2 Tax=Chlamydomonas ince... [more]
A0A6U6JDC2_9STRA1.030e-1033.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A485L881_9STRA2.230e-1032.22Aste57867_17691 protein n=1 Tax=Aphanomyces stella... [more]
A0A2K3E0R8_CHLRE5.950e-1032.99Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4FW09_9CHLO7.240e-1036.13Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig637contigP-wetherbeei_contig637:1619..4295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296587.XP_002509152.1
PFAMsDNA_pol_A_exo1,Mut7-C
Model size2677
Max annot lvl3041|Chlorophyta
KEGG koko:K09122
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.23e-09
EggNOG OGsKOG2207@1|root,KOG2207@2759|Eukaryota,37KF7@33090|Viridiplantae,34NXZ@3041|Chlorophyta
Descriptionexonuclease
Cds size2604
COG categoryL
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.4145777-UTR-P-wetherbeei_contig637:1618..16731683186908.4145777-UTR-P-wetherbeei_contig637:1618..1673Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig637 1619..1673 -
1683186908.4493155-UTR-P-wetherbeei_contig637:4277..42951683186908.4493155-UTR-P-wetherbeei_contig637:4277..4295Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig637 4278..4295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.4321733-CDS-P-wetherbeei_contig637:1673..42771683186908.4321733-CDS-P-wetherbeei_contig637:1673..4277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig637 1674..4277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig637.3.1prot_P-wetherbeei_contig637.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig637 1674..4277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig637.3.1

>prot_P-wetherbeei_contig637.3.1 ID=prot_P-wetherbeei_contig637.3.1|Name=mRNA_P-wetherbeei_contig637.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=868bp
MPLARLPASVVGRFWTRATSSPSPPSASGSSRSSLRHQYLPYAQPPSAMD
ANELLQATFARVRHAEAARLLALLARAGELRAAEMLAKRQGCLALRAQLL
RFLCTESFGGGGSSGGGGLGGGGDSSGGLGAPGEFFSMDDLEKASGGPSR
AIGKLIRRSFAELTAEESAMMCAHAGVTAPRWRSDGAKENKGSDSATRGG
RGGDTAGKDVSGGRHGSGSGKTDKVAMVDGAACTDGLALSKAKVKLVDSL
AGLYAAHAELAAYARRWQGGDGGTAGLGDGVPAPVGLDCEWRPRHFGGAV
ASAIVADPAAATTAEAAAANAMAKTRTATAEKVAGAAAAAAAAAAAAKTA
VMTGASPFDGRPATPRGGAKGGRMEPVALLQLATSESVYLIDLLQLVRPR
STDDNASDDALGVDSSGSSSRDESDGGGSGGDLAEAEAVLSALAATVFGP
FCVVIGYGLEGDLKRLRESYPSVSALLSPPCYSFDVQSYAASARGVAFVG
SGTWPPRGGLSGLAVALVRHRMDKGQQASDWGLRPLTPAQLSYAADDALV
LLRLVPALMLGPDERKAAFDSSTSLTDAAGQLRLALAQLRSCQAIGKALA
VPTMALEPAASGPLTVQNALFYLGMDGRLLRLRGGGAARHEGSNVIRSGI
GGGRGGGGSSNGCIGGGDGDGGDEPDGAGSNTFGDEDAEDACGGGARSDP
GADSTRTAMAALADGARGVKTLALVSTANGAGAAAAAAGCTEVVAVLQIG
RRLDVSKLEALLGLAPGSLRFAAPEELAARFGHERGCLGPVGLRSQRYRT
AWVGRRGTHHHMCAEGIPIVVDAALLLRGPKLLCGGGARDVVFLTSVVEL
VRNVGAVVAGIASSEGQ*
back to top

mRNA from alignment at P-wetherbeei_contig637:1619..4295-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig637.3.1 ID=mRNA_P-wetherbeei_contig637.3.1|Name=mRNA_P-wetherbeei_contig637.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2677bp|location=Sequence derived from alignment at P-wetherbeei_contig637:1619..4295- (Phaeothamnion wetherbeei SAG_119_79)
TCGCGGCCGCGGGATCAAATGCCGCTGGCGCGGCTCCCGGCCTCGGTTGT
GGGCCGTTTTTGGACGAGGGCAACGTCATCTCCTTCCCCGCCATCCGCGT
CCGGCTCGTCGCGGTCCTCTTTGCGCCATCAGTACCTGCCTTATGCTCAG
CCGCCGAGCGCGATGGACGCCAACGAGCTTCTGCAGGCGACTTTTGCCAG
AGTTCGCCATGCCGAGGCGGCGCGCCTGCTTGCGCTGCTGGCTCGGGCGG
GAGAGCTGCGGGCTGCCGAGATGCTGGCAAAACGGCAGGGATGCCTAGCC
CTGCGAGCGCAGCTTTTGCGCTTCCTCTGCACGGAGAGCTTCGGCGGCGG
AGGCAGCAGCGGCGGCGGGGGCCTCGGCGGCGGTGGCGACAGTAGCGGCG
GTCTTGGCGCACCCGGCGAATTCTTCTCGATGGATGATCTGGAGAAGGCG
AGTGGCGGTCCCTCGCGTGCCATTGGAAAGCTCATTCGGCGGTCTTTCGC
CGAACTGACCGCCGAAGAGTCAGCAATGATGTGCGCTCATGCGGGTGTGA
CAGCGCCTCGGTGGAGGAGTGACGGGGCAAAGGAGAACAAGGGAAGTGAC
TCTGCCACCAGGGGCGGCCGTGGCGGGGACACAGCTGGCAAAGATGTCAG
TGGCGGCAGGCACGGGAGCGGCAGCGGCAAGACTGACAAGGTGGCCATGG
TGGACGGAGCGGCGTGCACCGACGGTTTGGCGCTTTCGAAGGCAAAGGTC
AAGCTGGTTGACAGTTTGGCAGGTCTGTACGCTGCCCATGCAGAACTGGC
GGCGTATGCGCGGCGATGGCAAGGAGGCGACGGAGGGACGGCTGGCCTAG
GCGATGGCGTTCCCGCGCCGGTTGGCCTGGATTGCGAGTGGCGCCCGCGT
CATTTTGGTGGCGCTGTGGCATCTGCAATCGTTGCGGATCCAGCGGCGGC
GACGACGGCGGAAGCTGCAGCGGCCAACGCGATGGCGAAGACAAGGACAG
CGACGGCAGAGAAGGTCGCAGGTGCGGCTGCTGCTGCTGCTGCGGCGGCG
GCGGCGGCGAAGACGGCGGTTATGACAGGAGCTTCTCCATTCGATGGGCG
ACCAGCGACACCACGCGGCGGCGCAAAGGGCGGACGCATGGAGCCGGTAG
CTCTGCTGCAGCTTGCAACGTCCGAATCAGTTTATTTGATCGACCTCTTG
CAGCTGGTACGACCTCGGAGCACGGACGACAATGCATCGGACGACGCACT
CGGCGTCGACAGCAGCGGTAGCAGCAGCCGCGACGAAAGCGACGGCGGTG
GCAGCGGCGGCGATCTGGCAGAGGCTGAAGCCGTGCTGTCGGCGCTGGCC
GCAACGGTCTTCGGCCCTTTCTGTGTTGTGATTGGTTACGGGCTCGAAGG
CGACCTCAAACGGCTCCGTGAGTCCTACCCTTCCGTTTCCGCTCTTCTGA
GCCCGCCGTGCTACTCATTTGACGTCCAATCCTACGCGGCGTCGGCGCGG
GGTGTTGCTTTCGTGGGGTCTGGCACCTGGCCGCCGCGCGGTGGCCTTTC
AGGCCTCGCGGTGGCTCTGGTGCGTCACCGCATGGACAAGGGGCAGCAGG
CGAGCGACTGGGGCCTGAGGCCGCTGACGCCCGCGCAGCTGTCGTACGCG
GCGGACGACGCGCTCGTCCTGCTTCGGCTGGTTCCCGCCCTGATGTTGGG
GCCGGACGAGCGGAAGGCAGCGTTTGACAGCTCGACCTCTTTGACCGATG
CCGCGGGCCAGCTCCGCCTAGCATTGGCTCAGTTGCGTTCGTGCCAAGCG
ATTGGCAAGGCTTTGGCGGTGCCGACAATGGCATTGGAGCCGGCAGCTTC
TGGGCCTCTCACAGTCCAAAACGCACTCTTTTACTTGGGCATGGATGGAC
GTCTGCTCCGCCTCAGAGGCGGTGGAGCTGCGCGGCATGAAGGTTCGAAC
GTGATTCGCAGCGGCATCGGCGGTGGCCGCGGTGGCGGTGGCAGCAGCAA
TGGCTGCATTGGAGGCGGCGACGGCGACGGCGGCGACGAGCCTGACGGAG
CCGGCAGCAACACTTTCGGCGATGAAGACGCTGAGGATGCGTGCGGTGGC
GGGGCGAGGTCGGACCCGGGGGCCGACAGTACTCGCACCGCCATGGCCGC
CCTCGCCGACGGCGCGAGAGGAGTCAAGACTCTGGCGCTGGTTTCGACGG
CTAACGGAGCCGGCGCCGCTGCGGCGGCGGCGGGCTGCACAGAAGTTGTT
GCCGTCCTTCAGATCGGGCGCCGCCTGGACGTCAGCAAGCTGGAGGCTCT
GCTGGGGTTGGCGCCTGGATCCCTGCGGTTTGCCGCACCTGAGGAGCTCG
CCGCGCGCTTCGGACACGAACGGGGCTGCCTCGGGCCAGTGGGGTTGCGC
TCTCAGCGGTATCGCACAGCTTGGGTGGGCCGCCGGGGCACGCATCATCA
CATGTGCGCCGAAGGCATCCCGATTGTGGTCGATGCCGCGTTGCTGCTCC
GCGGGCCGAAGTTGCTTTGCGGCGGGGGAGCTCGTGATGTGGTGTTTTTG
ACGTCGGTGGTGGAGCTCGTAAGGAATGTGGGGGCCGTTGTGGCCGGAAT
TGCTTCTTCAGAAGGACAATGAATTGCCAGCAGCAGTAGCAGACAAGAGA
AACCATTAATGTAACCGTAAGAAGAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig637:1619..4295-

>mRNA_P-wetherbeei_contig637.3.1 ID=mRNA_P-wetherbeei_contig637.3.1|Name=mRNA_P-wetherbeei_contig637.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2604bp|location=Sequence derived from alignment at P-wetherbeei_contig637:1619..4295- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCTGGCGCGGCTCCCGGCCTCGGTTGTGGGCCGTTTTTGGACGAG
GGCAACGTCATCTCCTTCCCCGCCATCCGCGTCCGGCTCGTCGCGGTCCT
CTTTGCGCCATCAGTACCTGCCTTATGCTCAGCCGCCGAGCGCGATGGAC
GCCAACGAGCTTCTGCAGGCGACTTTTGCCAGAGTTCGCCATGCCGAGGC
GGCGCGCCTGCTTGCGCTGCTGGCTCGGGCGGGAGAGCTGCGGGCTGCCG
AGATGCTGGCAAAACGGCAGGGATGCCTAGCCCTGCGAGCGCAGCTTTTG
CGCTTCCTCTGCACGGAGAGCTTCGGCGGCGGAGGCAGCAGCGGCGGCGG
GGGCCTCGGCGGCGGTGGCGACAGTAGCGGCGGTCTTGGCGCACCCGGCG
AATTCTTCTCGATGGATGATCTGGAGAAGGCGAGTGGCGGTCCCTCGCGT
GCCATTGGAAAGCTCATTCGGCGGTCTTTCGCCGAACTGACCGCCGAAGA
GTCAGCAATGATGTGCGCTCATGCGGGTGTGACAGCGCCTCGGTGGAGGA
GTGACGGGGCAAAGGAGAACAAGGGAAGTGACTCTGCCACCAGGGGCGGC
CGTGGCGGGGACACAGCTGGCAAAGATGTCAGTGGCGGCAGGCACGGGAG
CGGCAGCGGCAAGACTGACAAGGTGGCCATGGTGGACGGAGCGGCGTGCA
CCGACGGTTTGGCGCTTTCGAAGGCAAAGGTCAAGCTGGTTGACAGTTTG
GCAGGTCTGTACGCTGCCCATGCAGAACTGGCGGCGTATGCGCGGCGATG
GCAAGGAGGCGACGGAGGGACGGCTGGCCTAGGCGATGGCGTTCCCGCGC
CGGTTGGCCTGGATTGCGAGTGGCGCCCGCGTCATTTTGGTGGCGCTGTG
GCATCTGCAATCGTTGCGGATCCAGCGGCGGCGACGACGGCGGAAGCTGC
AGCGGCCAACGCGATGGCGAAGACAAGGACAGCGACGGCAGAGAAGGTCG
CAGGTGCGGCTGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGAAGACGGCG
GTTATGACAGGAGCTTCTCCATTCGATGGGCGACCAGCGACACCACGCGG
CGGCGCAAAGGGCGGACGCATGGAGCCGGTAGCTCTGCTGCAGCTTGCAA
CGTCCGAATCAGTTTATTTGATCGACCTCTTGCAGCTGGTACGACCTCGG
AGCACGGACGACAATGCATCGGACGACGCACTCGGCGTCGACAGCAGCGG
TAGCAGCAGCCGCGACGAAAGCGACGGCGGTGGCAGCGGCGGCGATCTGG
CAGAGGCTGAAGCCGTGCTGTCGGCGCTGGCCGCAACGGTCTTCGGCCCT
TTCTGTGTTGTGATTGGTTACGGGCTCGAAGGCGACCTCAAACGGCTCCG
TGAGTCCTACCCTTCCGTTTCCGCTCTTCTGAGCCCGCCGTGCTACTCAT
TTGACGTCCAATCCTACGCGGCGTCGGCGCGGGGTGTTGCTTTCGTGGGG
TCTGGCACCTGGCCGCCGCGCGGTGGCCTTTCAGGCCTCGCGGTGGCTCT
GGTGCGTCACCGCATGGACAAGGGGCAGCAGGCGAGCGACTGGGGCCTGA
GGCCGCTGACGCCCGCGCAGCTGTCGTACGCGGCGGACGACGCGCTCGTC
CTGCTTCGGCTGGTTCCCGCCCTGATGTTGGGGCCGGACGAGCGGAAGGC
AGCGTTTGACAGCTCGACCTCTTTGACCGATGCCGCGGGCCAGCTCCGCC
TAGCATTGGCTCAGTTGCGTTCGTGCCAAGCGATTGGCAAGGCTTTGGCG
GTGCCGACAATGGCATTGGAGCCGGCAGCTTCTGGGCCTCTCACAGTCCA
AAACGCACTCTTTTACTTGGGCATGGATGGACGTCTGCTCCGCCTCAGAG
GCGGTGGAGCTGCGCGGCATGAAGGTTCGAACGTGATTCGCAGCGGCATC
GGCGGTGGCCGCGGTGGCGGTGGCAGCAGCAATGGCTGCATTGGAGGCGG
CGACGGCGACGGCGGCGACGAGCCTGACGGAGCCGGCAGCAACACTTTCG
GCGATGAAGACGCTGAGGATGCGTGCGGTGGCGGGGCGAGGTCGGACCCG
GGGGCCGACAGTACTCGCACCGCCATGGCCGCCCTCGCCGACGGCGCGAG
AGGAGTCAAGACTCTGGCGCTGGTTTCGACGGCTAACGGAGCCGGCGCCG
CTGCGGCGGCGGCGGGCTGCACAGAAGTTGTTGCCGTCCTTCAGATCGGG
CGCCGCCTGGACGTCAGCAAGCTGGAGGCTCTGCTGGGGTTGGCGCCTGG
ATCCCTGCGGTTTGCCGCACCTGAGGAGCTCGCCGCGCGCTTCGGACACG
AACGGGGCTGCCTCGGGCCAGTGGGGTTGCGCTCTCAGCGGTATCGCACA
GCTTGGGTGGGCCGCCGGGGCACGCATCATCACATGTGCGCCGAAGGCAT
CCCGATTGTGGTCGATGCCGCGTTGCTGCTCCGCGGGCCGAAGTTGCTTT
GCGGCGGGGGAGCTCGTGATGTGGTGTTTTTGACGTCGGTGGTGGAGCTC
GTAAGGAATGTGGGGGCCGTTGTGGCCGGAATTGCTTCTTCAGAAGGACA
ATGA
back to top