mRNA_P-wetherbeei_contig6367.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6367.1.1
Unique NamemRNA_P-wetherbeei_contig6367.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6367.1.1 vs. uniprot
Match: A0A835ZJ00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ00_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.970e-23
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 LIGKAKAVVDADMALRDASLLADDFKFVRAFQAPLDKAAYLCEYSSYGLREAFPDLFWNAHDFRMERYDSNRVVATVRFQGTHRGTLKYRK 273
            L+ KAKAVV+++M L + SLL+DDF  ++ F+  L KA YL EY + GL  A PDL WNAHDFR++R+++ RV  TVR  GTHRG L Y K
Sbjct:   74 LVEKAKAVVESNMGLSNPSLLSDDFSLLQLFRPTLSKAQYLKEYGALGLDRALPDLQWNAHDFRVDRFNARRVHLTVRLSGTHRGVLSYGK 164          
BLAST of mRNA_P-wetherbeei_contig6367.1.1 vs. uniprot
Match: D7FSC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSC2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.970e-17
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 LIGKAKAVVDADMALRDASLLADDFKFVRAFQAPLDKAAYLCE----YSSYGLREAFPDLFWNAHDFRMERYDSNRVVATVRFQGTHRGTLKY 267
            LI KAK +V+ADM ++ A +L  DF+F+  F   + +A YL E    Y++  LR A PDLFWN++D+R+++Y+ NRV AT R  GTH G L +
Sbjct:   22 LIDKAKTIVEADMGVKVADMLGPDFRFLWQFNGDMARADYLTEGTGPYAT--LRTALPDLFWNSYDYRVDKYNRNRVWATTRLTGTHNGPLVF 112          
BLAST of mRNA_P-wetherbeei_contig6367.1.1 vs. uniprot
Match: A0A7S2XK70_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XK70_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.190e-9
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    1 LIGKAKAVVDADMALRDASLLADDFKFVRAFQAPLDKAAYLCEYSSYGLREAFPDLFWNAHDFRMERYDSNRVVATVRFQGTHRGTL 261
            ++  AK V+ AD    D  LLA  F F      PL K A++  +SS+ L++AFPDL  +  +FR++ YD NRV    R  GT  G L
Sbjct:  283 MVQLAKGVIAADNGAADPDLLAPSFTFCGPIVGPLPKDAFVEAFSSFKLKDAFPDLGQDLSNFRVDPYDPNRVWVDARGSGTRTGVL 369          
BLAST of mRNA_P-wetherbeei_contig6367.1.1 vs. uniprot
Match: I0YKW7_COCSC (Amidase signature enzyme n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKW7_COCSC)

HSP 1 Score: 54.7 bits (130), Expect = 1.580e-6
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 LIGKAKAVVDADMALRDASLLADDFKFVRAFQAPLDKAAYLCEYSSYGLREAFPDLFWNAHDFRMERYDSNRVVATVRFQGTHRGTLKY 267
            LI  A+ V   +  + D  LLAD+F+F     + L K  ++   S + L++AFP++  + +D+R+++Y+ NRV  TVR   TH G L++
Sbjct:   25 LIALAQKVFATNSGVEDPDLLADNFRFEFPVVS-LAKKDFVKAVSGFNLKDAFPNMESHPYDWRVDKYEPNRVWWTVRNTATHTGPLRF 112          
BLAST of mRNA_P-wetherbeei_contig6367.1.1 vs. uniprot
Match: A0A8J9WRP9_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRP9_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 2.320e-6
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    1 LIGKAKAVVDADMALRDASLLADDFKFVRAFQAPLDKAA-----YLCEY----SSYGLREAFPDLFWNAHDFRMERYDSNRVVATVRFQGTHRGTLKY 267
            LI  A+ V  ++  +    LLADDF+F     +   KA+      +C++    S + L++AFP++  + +D+R+++Y+ NRV  TVR   TH G L +
Sbjct:   25 LIALAQKVFKSNSGVEQPELLADDFRFEFPVVSLAKKASCCLSSIICDFVKAVSGFNLKQAFPNMESHPYDWRVDKYEPNRVWFTVRNTATHAGPLTF 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6367.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZJ00_9STRA1.970e-2354.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FSC2_ECTSI5.970e-1746.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XK70_9STRA1.190e-940.23Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
I0YKW7_COCSC1.580e-634.83Amidase signature enzyme n=1 Tax=Coccomyxa subelli... [more]
A0A8J9WRP9_9CHLO2.320e-632.65Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6367contigP-wetherbeei_contig6367:355..645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSC2
Model size291
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.78e-18
EggNOG OGs2AHTF@1|root,2S69N@2759|Eukaryota
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186908.2154124-CDS-P-wetherbeei_contig6367:354..6451683186908.2154124-CDS-P-wetherbeei_contig6367:354..645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6367 355..645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6367.1.1prot_P-wetherbeei_contig6367.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6367 355..645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6367.1.1

>prot_P-wetherbeei_contig6367.1.1 ID=prot_P-wetherbeei_contig6367.1.1|Name=mRNA_P-wetherbeei_contig6367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
LIGKAKAVVDADMALRDASLLADDFKFVRAFQAPLDKAAYLCEYSSYGLR
EAFPDLFWNAHDFRMERYDSNRVVATVRFQGTHRGTLKYRKRVRNE*
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mRNA from alignment at P-wetherbeei_contig6367:355..645-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6367.1.1 ID=mRNA_P-wetherbeei_contig6367.1.1|Name=mRNA_P-wetherbeei_contig6367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6367:355..645- (Phaeothamnion wetherbeei SAG_119_79)
CTGATTGGTAAGGCGAAGGCTGTCGTCGACGCCGATATGGCGCTCCGCGA TGCGTCTCTCCTTGCGGACGACTTTAAGTTTGTGCGCGCCTTTCAGGCGC CGCTCGATAAAGCCGCGTACCTGTGCGAGTACAGCAGCTACGGCCTCCGG GAGGCGTTTCCGGACCTGTTTTGGAACGCGCACGACTTTCGGATGGAGCG CTACGATAGCAACCGCGTTGTGGCGACCGTCCGCTTCCAGGGAACTCACC GCGGGACGCTGAAGTACAGGAAGAGGGTGCGTAACGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6367:355..645-

>mRNA_P-wetherbeei_contig6367.1.1 ID=mRNA_P-wetherbeei_contig6367.1.1|Name=mRNA_P-wetherbeei_contig6367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6367:355..645- (Phaeothamnion wetherbeei SAG_119_79)
CTGATTGGTAAGGCGAAGGCTGTCGTCGACGCCGATATGGCGCTCCGCGA
TGCGTCTCTCCTTGCGGACGACTTTAAGTTTGTGCGCGCCTTTCAGGCGC
CGCTCGATAAAGCCGCGTACCTGTGCGAGTACAGCAGCTACGGCCTCCGG
GAGGCGTTTCCGGACCTGTTTTGGAACGCGCACGACTTTCGGATGGAGCG
CTACGATAGCAACCGCGTTGTGGCGACCGTCCGCTTCCAGGGAACTCACC
GCGGGACGCTGAAGTACAGGAAGAGGGTGCGTAACGAATGA
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