mRNA_P-wetherbeei_contig6361.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6361.1.1
Unique NamemRNA_P-wetherbeei_contig6361.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A482RX65_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX65_9ARCH)

HSP 1 Score: 136 bits (342), Expect = 1.680e-34
Identity = 93/261 (35.63%), Postives = 136/261 (52.11%), Query Frame = 1
Query:   28 FAQRSRASGGLVALDDRGFAELVAGTPRQHHTVVLATTH--RSVCTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADY-GPFDEMRLPKVVTAEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQG--GQTAFFHPHSNQQFVIEGFVLGGLN 795
             A++SR  G +V LDD  FA      PR +  VV  T    +  C  C     E +LLA+SY + +A  R  + +  F  + ++++ +T         VP+V +  P+                G D       D  ++P   +AE L GFVR R GV++ I+RS+L   +F+    +LL L +RPL++ M  IL+ +R    W  +S   Y  ++SG +FDIIR+PPL+H  G  GQ  FF+PHS  QFV EGFV+GGLN
Sbjct:   14 LAEKSR--GNVVTLDDSTFAYFAQHKPRSYSLVVFLTAAHPKFKCGVCRTLDQELQLLASSY-MKQAQARREEPRIFFVRLDYEASQKTFA-AYDAASVPVVFYIAPS---------SGLGGTGGVDGSPPSARDRYQVPPDPSAEGLAGFVRDRAGVAVDIQRSKLLAYVFIVVAFSLLALLVRPLISFMPRILRLLRNSALWAVVSLGVYTCAISGLIFDIIRTPPLYHVNGQTGQLLFFYPHSGSQFVAEGFVIGGLN 261          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A7S2UY50_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY50_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.270e-28
Identity = 98/294 (33.33%), Postives = 145/294 (49.32%), Query Frame = 1
Query:    1 MTAEERRAAFAQRSRAS-GGLVALDDRGFAELVAGTPRQHHTVVLATTHRSV--CTACGQAADEFELLATSYA--VAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMR---LPKVVTAEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSI------RPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSP-PLF-HSQGGQTAFFHPHSNQQFVIEGFVLGGLNFAAGACVVGLAEW 834
            +T + +RA  A  SR S    V+LDD  F   VA  PR + T+V  T   +   C+ C +   E+ +LA+SY   VA AG R       FF V+    AR         +VP +L+  P                 G ++ Y   D+ R        TAE L  ++  +TG  + I RS         AVL L++L++      RP+++R+  I+  +R K+ W+ +S   Y  S+SG ++DIIR+P P F + Q GQ  FFHP +N QFV+EGF++GGLN      V+ LA +
Sbjct:   30 VTGDTKRAQLATMSRKSLDNTVSLDDTSFDFYVANKPRPYGTIVFFTARATKYKCSVCREMEAEYSVLASSYRAHVANAGARN---PPTFFTVVDVDGARATFQNYAFQQVPQLLYIPP---------------YSGQESKY-VVDKKRAFGFTSKPTAEDLATWLHTQTGDRVHIVRST------TRAVLTLVLLAVGAACLARPIIHRLPTIINLLRNKMLWLLVSLGMYTCSISGMIYDIIRNPAPFFMNHQTGQIVFFHPQANSQFVVEGFIIGGLNLGCALSVIVLATY 298          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A836CB15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB15_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.110e-20
Identity = 62/179 (34.64%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  283 RTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMRLPKVVTAEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLF--HSQGGQTAFFHPHSNQQFVIEGFVLGGLNFAAGAC 813
            R V     +  VP V HF P                 GA A +   D M + K+ TAE +  FV  +TG    I RSQ    + + A+L  LV ++R  +  + L+L+ VR+   W+ +S   Y  S+SG +FDIIRSPP F   +Q  +  +F P  N Q+V+EGF++G LN     C
Sbjct:    9 RKVFQGYELQSVPQVAHFAPEAAP-------------GAGAGWPQADMMPVTKLFTAEDIAQFVGDKTGFRYTIYRSQFAARMALLALLLFLVGALRTAITNVALVLRVVRSPTLWLVVSLLVYTFSISGAIFDIIRSPPPFVISAQTRKPVYFSPQPNSQYVVEGFIVGILNLTTAFC 174          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A4S2MG22_OPIFE (Uncharacterized protein n=2 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MG22_OPIFE)

HSP 1 Score: 77.4 bits (189), Expect = 1.260e-12
Identity = 73/264 (27.65%), Postives = 120/264 (45.45%), Query Frame = 1
Query:   58 LVALDDRGFAELVAGTPRQHHTVVLATTHRSV--CTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMRLPKV-VTAEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVR-----TKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFH-SQGGQT-AFFHPHSNQQFVIEGFVLGGLNFAAGACVV 819
            ++ L+   F        R +  +++ T  R    C  C +AA+EF ++A SYA ++   REG   D++F ++    A  V  +L V   P +LH  P                   + + GP D M +P +   AEA+  +  +RT + I I R       + A +L +L ++    V    L  + V      ++  W  LS       ++G V++ IR PPLFH +Q G+  AF +P S+ QFV E F++  L   A A ++
Sbjct:   41 VIRLNTEMFESFARSKARNYSLILMLTAQRPQRECHVCKEAAEEFRIVANSYAYSR---REG---DLYFGIVDYDEAPDVFVRLKVNTAPSILHVQP-------------------NKEIGPEDFMDVPTLGYLAEAVAKWANRRTSIQIRIVRPPS----YTATILIVLFMT----VGAASLWYRQVNIDFLYSRSLWCMLSLTVIMCGITGQVYNQIRGPPLFHGTQTGEILAFIYPGSDYQFVAETFIVMALYVLATAGII 271          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A3R7JLX2_CLOSI (Tumor suppressor candidate 3 (Fragment) n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=A0A3R7JLX2_CLOSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.930e-12
Identity = 73/264 (27.65%), Postives = 120/264 (45.45%), Query Frame = 1
Query:   58 LVALDDRGFAELVAGTPRQHHTVVLATTHRSV--CTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMRLPKV-VTAEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVR-----TKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFH-SQGGQT-AFFHPHSNQQFVIEGFVLGGLNFAAGACVV 819
            ++ L+   F        R +  +++ T  R    C  C +AA+EF+++A SYA ++   REG   D++F ++    A  V  +L V   P +LH  P                   + + GP D M +P +   AEA+  +  +RT + I I R       + A +L +L ++    V    L  + V      +   W  LS       ++G V++ IR PPLFH +Q G+  AF +P S+ QFV E F++  L   A A ++
Sbjct:   85 VIRLNTEMFESFARSKARNYSLILMLTAQRPQRECHVCKEAAEEFKIVANSYAYSR---REG---DLYFGIVDYDEAPDVFVRLKVNTAPSILHVQP-------------------NKEIGPEDFMDVPTLGYLAEAVAKWANRRTSIQIRIVRPPS----YTATILIVLFMT----VGAASLWYRQVNIDFLYSSSVWCMLSLTVIMCGITGQVYNQIRGPPLFHGTQTGEILAFIYPGSDYQFVAETFIVIALYVLATAGII 315          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A1Y1V4D2_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V4D2_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-10
Identity = 64/252 (25.40%), Postives = 117/252 (46.43%), Query Frame = 1
Query:   40 SRASGGLVALDDRGFAELVAGTPRQHHTVVLATTHRSV--CTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMRLPKV-VTAEALEGFVRQRTGVSIPIRR-SQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQGGQTAFFHPHSNQQFVIEGFVL 783
            +++S   + L+++ + +L+  TPR +HT++LAT       C  C +   EF  +A S+        +   K V+FA++   N + V  +L +  VP +LHF P+                  D    P D   LP+  + AE L  FV ++TGV   ++R +     ++   ++  L++SI+ ++       + +  K  WM L+ +  F+ +SG ++  IR PP      G   FF     QQ+ +E  ++
Sbjct:   38 AKSSDNFINLNEK-YYDLLINTPRDYHTILLATATNPQFKCEPCRELLPEFLNVANSW--------DPNDKRVYFAILDYQNGKNVFKQLKIQNVPNILHFRPS------------------DGVVKP-DFYDLPRNGLGAEELIQFVIKKTGVEFELQRPTDYTQYIYYGFIVVALIISIKIVIQYFK---EIIVNKRSWMILTVSIIFLMISGFMWVHIRHPPNSGVSHGNVEFFISGFQQQYAVESQII 258          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A0L0H583_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H583_SPIPD)

HSP 1 Score: 67.8 bits (164), Expect = 2.340e-9
Identity = 71/250 (28.40%), Postives = 107/250 (42.80%), Query Frame = 1
Query:   88 ELVAGTPRQHHTVVLATT--HRSVCTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMRLPKVVTAEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQGGQTAFFHPHSNQQFVIEGFVLGGLNFAAGACVVGLAE 831
            +L    PR +   V  T       C  C Q   EF+L+A+S+       R      ++F  +  S+ R V  KLHVT VPMVLHF P                 G+D  Y  +D  R  + ++AEAL   V +   V  P+RR          A+  L +L++  LV    L+L  V+ +  W T    +  +  SG +++ IR PP    +  +     P    QF++E  ++G L  AA    V L +
Sbjct:   54 DLFTEAPRNYSFFVTLTALAPEMGCAPCRQFDSEFKLVASSWG------RVAVPGKLYFGTVDFSDGREVFQKLHVTNVPMVLHFPPT----------EGPDATGSD-QYELYDLNR--RGLSAEALVEHVEKAAHVKFPLRRPINFAYYATVAISILGLLALLKLVAGHLLVL--VQNRKIWSTAVIGWTILMCSGHMWNSIRGPPYTGVRNNRPEIVAPGFQNQFILESQIVGLLYAAAAVMFVALVK 282          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A074ZXJ1_9TREM (Uncharacterized protein n=1 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A074ZXJ1_9TREM)

HSP 1 Score: 64.3 bits (155), Expect = 5.980e-8
Identity = 68/269 (25.28%), Postives = 114/269 (42.38%), Query Frame = 1
Query:   58 LVALDDRGFAELVAGTPRQHHTVVLATTHRSV--CTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDEMRLPKV-VTAEALEGFVRQRTGVSIPIRRSQLGVI----------LFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQ--GGQTAFFHPHSNQQFVIEGFVLGGLNFAAGACVV 819
            ++ L+   F        R +  +++ T  +    C  C +AA+EF ++A SYA ++   REG   D++F ++    A  V  +L V   P +LH  P                   + + GP D M +P +   AEA+  +  +RT + + I+     V+          L      + L      L  R  + +  + +   W  LS       ++G V++ IR PPLFH    G   AF +P S+ QFV E F++  L   A A ++
Sbjct:  212 VIRLNTEMFESFARSKARNYSLILMLTAQKPQRECHVCKEAAEEFRIVANSYAYSR---REG---DLYFGIVDYDEAPDVFVRLKVNTAPSILHVQP-------------------NKEIGPEDFMDVPTLGYLAEAVAKWANRRTSIQVTIKFMTSSVVNIDSHRASPKLHGNHSYSALHDGAASLWYR-QVNVDFLYSPSLWCMLSLTVIMCGITGQVYNQIRGPPLFHGTHTGEILAFIYPGSDYQFVAETFIVMALYVLATAGII 454          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A1Y2D2K4_9FUNG (Uncharacterized protein n=2 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2D2K4_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.520e-7
Identity = 65/258 (25.19%), Postives = 117/258 (45.35%), Query Frame = 1
Query:   40 SRASGGLVALDDRGFAELVAGTPRQHHTVVLAT-THRSV-CTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPF--DEMRLPKV-VTAEALEGFVRQRTGVSIPIRRSQ-----LGVILFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQGGQTAFFHPHSNQQFVIEGFVL 783
            +++S   + L+++ F +L+  TPR +HT++LAT T  ++ C  C Q   EF  +A S+        +   K ++FA+I   N + +  KL +  VP VL+F P                     D G    +   LP+  + AE L  FV ++TG    +++ +     + + + + +VL  +  +I+   +        V  K  WM L+ +  F+ +SG ++  IR PP       +   F P   QQ+ IE  ++
Sbjct:   38 AKSSDNFINLNEKYF-DLLINTPRDYHTILLATATSPNINCEPCRQLLPEFLSVANSW--------DQTDKRLYFAIIDYQNGKNIFKKLKIQNVPNVLYFKP---------------------DQGEVKPEFYDLPRHGLGAEELIKFVTKKTGFEYELKKPKDYSQYINIGILIISVLICIKFAIQYFKD-------IVTNKRSWMILTVSIIFLMISGFMWVHIRHPPNNGMSKNRMEIFIPGFQQQYAIESQII 258          
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Match: A0A1Y1XDD6_9FUNG (Thioredoxin domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XDD6_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 1.230e-6
Identity = 64/254 (25.20%), Postives = 114/254 (44.88%), Query Frame = 1
Query:   40 SRASGGLVALDDRGFAELVAGTPRQHHTVVLAT--THRSVCTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHKLHVTRVPMVLHFGPALTSPXXXXXXXXXXXXGADADYGPFDE--MRLPKV-VTAEALEGFVRQRTGVSIPIRR-SQLGVILFVAAVLALLVLSIRPLVNRMDLILKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQGGQTAFFHPHSNQQFVIEGFVL 783
            +++    + L+++ F +L+  TPR +HT+VLAT  + +  C  C +   EF  +A S+          K K V+FA+I   N R +  KL +  VP VL+F P                     D G  +     LP+  + AE L  FV ++TG    ++R +     ++   ++  +++ I   +  +    + V  K  WM L+ +  F+ +SG ++  IR PP       +  FF     QQ+ +E  ++
Sbjct:   38 AKSRDNFINLNEKYF-DLLLTTPRDYHTIVLATATSPQIKCEPCRELLPEFLAVANSW--------NQKDKRVYFAIIDYQNGRNIFKKLKIQNVPNVLYFKP---------------------DQGTVNPEFYDLPRHGLGAEELIKFVIKKTGFEFELQRPTDYTQYIYNGMIIITVIVCI---LYALKYFKEIVVNKRNWMILTVSVIFLMISGFMWVHIRHPPNNGVSKSKVEFFVSGFQQQYGVESQII 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6361.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A482RX65_9ARCH1.680e-3435.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2UY50_9STRA1.270e-2833.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CB15_9STRA1.110e-2034.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4S2MG22_OPIFE1.260e-1227.65Uncharacterized protein n=2 Tax=Opisthorchis felin... [more]
A0A3R7JLX2_CLOSI1.930e-1227.65Tumor suppressor candidate 3 (Fragment) n=1 Tax=Cl... [more]
A0A1Y1V4D2_9FUNG1.420e-1025.40Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A0L0H583_SPIPD2.340e-928.40Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A074ZXJ1_9TREM5.980e-825.28Uncharacterized protein n=1 Tax=Opisthorchis viver... [more]
A0A1Y2D2K4_9FUNG1.520e-725.19Uncharacterized protein n=2 Tax=Neocallimastix cal... [more]
A0A1Y1XDD6_9FUNG1.230e-625.20Thioredoxin domain-containing protein n=1 Tax=Anae... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6361contigP-wetherbeei_contig6361:1247..2500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LPZ2
Preferred nameOST3
PFAMsOST3_OST6
Model size843
Max annot lvl2759|Eukaryota
KEGG koko:K12669,ko:K19478
KEGG TC9.A.45.1.1,9.A.45.1.2,9.A.45.1.3,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0010483,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0022414,GO:0031224,GO:0031984,GO:0032501,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0051703,GO:0051704,GO:0070085,GO:0071704,GO:0071944,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Exons3
Evalue4.73e-35
EggNOG OGsKOG2603@1|root,KOG2603@2759|Eukaryota
Descriptionprotein N-linked glycosylation via asparagine
Cds size843
COG categoryI
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.6232705-CDS-P-wetherbeei_contig6361:1246..15461683186907.6232705-CDS-P-wetherbeei_contig6361:1246..1546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6361 1247..1546 +
1683186907.6337395-CDS-P-wetherbeei_contig6361:1736..21831683186907.6337395-CDS-P-wetherbeei_contig6361:1736..2183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6361 1737..2183 +
1683186907.6423907-CDS-P-wetherbeei_contig6361:2404..25001683186907.6423907-CDS-P-wetherbeei_contig6361:2404..2500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6361 2405..2500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6361.1.1prot_P-wetherbeei_contig6361.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6361 1247..2500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6361.1.1

>prot_P-wetherbeei_contig6361.1.1 ID=prot_P-wetherbeei_contig6361.1.1|Name=mRNA_P-wetherbeei_contig6361.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
MTAEERRAAFAQRSRASGGLVALDDRGFAELVAGTPRQHHTVVLATTHRS
VCTACGQAADEFELLATSYAVAKAGDREGKMKDVFFAVIFDSNARTVLHK
LHVTRVPMVLHFGPALTSPAATAAAATAAAAGADADYGPFDEMRLPKVVT
AEALEGFVRQRTGVSIPIRRSQLGVILFVAAVLALLVLSIRPLVNRMDLI
LKAVRTKVPWMTLSAAFYFVSVSGGVFDIIRSPPLFHSQGGQTAFFHPHS
NQQFVIEGFVLGGLNFAAGACVVGLAEWAVH
back to top

mRNA from alignment at P-wetherbeei_contig6361:1247..2500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6361.1.1 ID=mRNA_P-wetherbeei_contig6361.1.1|Name=mRNA_P-wetherbeei_contig6361.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig6361:1247..2500+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGGAGGAGCGGCGCGCCGCCTTCGCCCAACGGTCGAGGGCCAG CGGCGGGCTCGTTGCCCTCGACGACCGCGGCTTTGCGGAGCTCGTGGCCG GGACGCCGCGGCAACACCACACCGTCGTCCTCGCCACGACGCACCGGTCG GTCTGCACGGCCTGCGGACAGGCGGCGGACGAATTCGAGCTGCTGGCAAC ATCTTACGCTGTAGCAAAGGCTGGCGACCGCGAAGGGAAGATGAAGGACG TCTTCTTCGCCGTGATTTTCGACTCTAACGCAAGGACCGTCCTGCATAAG GTGCGAGAAATAACTTTTGAGCGCCGGCGGCGTTCGTCTTTACCCCTCCT TGCAACGAGAGAAGTTCTTCTGCTCTTCCTTTCCTTCTTTTCCTCTTTTT TATCTTGCGGTATGCCACCCCTCCTCTTCATAGCCGGACTTTCTCTCCTG TTCCCTTGCCGCGCCCGTATCCTTATTCCGCCACGTGCAGCTTCACGTCA CCCGCGTCCCGATGGTACTCCATTTCGGCCCGGCGTTGACGTCGCCCGCC GCCACCGCGGCTGCCGCCACCGCGGCTGCCGCCGGCGCCGATGCCGACTA CGGCCCGTTCGACGAGATGCGGCTGCCGAAGGTGGTCACCGCCGAGGCGC TGGAGGGATTCGTCCGGCAGCGAACCGGCGTGTCCATCCCGATCCGGCGC TCCCAGCTGGGGGTTATTTTGTTCGTGGCGGCAGTGCTGGCGCTGCTCGT GCTGTCCATTCGGCCGCTGGTGAACCGCATGGACCTGATTCTGAAGGCTG TGCGCACCAAGGTGCCATGGATGACGCTCAGCGCGGCGTTCTACTTTGTG TCAGTGTCGGGCGGCGTCTTTGACATCATCCGGTCGCCGCCACTCTTTCA TTCGCAGGGCGGCCAGACCGCCTTCTTCCACCCCCATGTGCGTCAGCAGT TGTCAAGCTGGTGAACGGTGACAACGGCGGCATGTGTTTTTGCATTTCAT CCTTGATTCCACAGGTGAAATCGAAGTTTCTTGTGTTTTTCGCAAATAAC AAAGCTGAAACGTATCAAGGCCACGCACGGAATCAGTTTGTGCTTGGACC TCTCTCATTCCAAACTGCTCGCAAAAACATTCCAATAAATTACATGTGCT TTTAACAGAGCAATCAGCAGTTCGTAATCGAGGGCTTCGTCCTCGGCGGG CTCAACTTCGCGGCGGGGGCGTGCGTGGTAGGGCTGGCGGAGTGGGCGGT GCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6361:1247..2500+

>mRNA_P-wetherbeei_contig6361.1.1 ID=mRNA_P-wetherbeei_contig6361.1.1|Name=mRNA_P-wetherbeei_contig6361.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig6361:1247..2500+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGGAGGAGCGGCGCGCCGCCTTCGCCCAACGGTCGAGGGCCAG
CGGCGGGCTCGTTGCCCTCGACGACCGCGGCTTTGCGGAGCTCGTGGCCG
GGACGCCGCGGCAACACCACACCGTCGTCCTCGCCACGACGCACCGGTCG
GTCTGCACGGCCTGCGGACAGGCGGCGGACGAATTCGAGCTGCTGGCAAC
ATCTTACGCTGTAGCAAAGGCTGGCGACCGCGAAGGGAAGATGAAGGACG
TCTTCTTCGCCGTGATTTTCGACTCTAACGCAAGGACCGTCCTGCATAAG
CTTCACGTCACCCGCGTCCCGATGGTACTCCATTTCGGCCCGGCGTTGAC
GTCGCCCGCCGCCACCGCGGCTGCCGCCACCGCGGCTGCCGCCGGCGCCG
ATGCCGACTACGGCCCGTTCGACGAGATGCGGCTGCCGAAGGTGGTCACC
GCCGAGGCGCTGGAGGGATTCGTCCGGCAGCGAACCGGCGTGTCCATCCC
GATCCGGCGCTCCCAGCTGGGGGTTATTTTGTTCGTGGCGGCAGTGCTGG
CGCTGCTCGTGCTGTCCATTCGGCCGCTGGTGAACCGCATGGACCTGATT
CTGAAGGCTGTGCGCACCAAGGTGCCATGGATGACGCTCAGCGCGGCGTT
CTACTTTGTGTCAGTGTCGGGCGGCGTCTTTGACATCATCCGGTCGCCGC
CACTCTTTCATTCGCAGGGCGGCCAGACCGCCTTCTTCCACCCCCATAGC
AATCAGCAGTTCGTAATCGAGGGCTTCGTCCTCGGCGGGCTCAACTTCGC
GGCGGGGGCGTGCGTGGTAGGGCTGGCGGAGTGGGCGGTGCAC
back to top