mRNA_P-wetherbeei_contig636.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig636.2.1
Unique NamemRNA_P-wetherbeei_contig636.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig636.2.1 vs. uniprot
Match: W7U9G8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9G8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.820e-8
Identity = 59/218 (27.06%), Postives = 90/218 (41.28%), Query Frame = 2 
Query:  320 QIGIFVNTLFAGVITTVSLLVPWCTFLYTANATYWPISVPVEVGLTRCFGDTCRLRELAKGVPPIPNGGGG---PLPTWGPPPVAVPDSGGAXXXXXXXXXXXXXXXXXXXXXXXAXXAPAASHASGLPSPDSPAFP---FFVAAVTAICLFALACALALVASGYEAARMRGRVSPRGQLPVGMTMWSSVCLLLAPLLYVAITAGPLNGGEYRVGLWV 955
            Q  + +  L        +LLVPW    Y     ++P+ +PV++GL +CFGD C       G      G G    P+P WGP       +GG                                   G P  DS       F +AA+ AI   +++  +A+  +  EAAR++GR    G  P+ ++  S++   +A L Y+ IT   L+GG Y VG W+
Sbjct:   18 QYALLLGNLLVLANFIAALLVPWVEARYKVFDAWFPVYMPVKIGLLKCFGDMCSALYGETGQQQKGQGKGNDRPPIPGWGP-------TGGG---------------------------------GGSPINDSGGGAKALFEIAAIFAIIFLSVSVLVAMGGALVEAARVQGRRDISGLFPLQLSGASALICSVALLQYLFITLAGLHGGRYEVGFWL 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig636.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W7U9G8_9STRA2.820e-827.06Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig636contigP-wetherbeei_contig636:3242..5289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1696
Hectar predicted targeting categorysignal peptide
Exons3
Cds size870
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.5051634-UTR-P-wetherbeei_contig636:3241..34671683186907.5051634-UTR-P-wetherbeei_contig636:3241..3467Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig636 3242..3467 +
1683186907.5139682-UTR-P-wetherbeei_contig636:3669..37501683186907.5139682-UTR-P-wetherbeei_contig636:3669..3750Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig636 3670..3750 +
1683186907.537975-UTR-P-wetherbeei_contig636:4770..52891683186907.537975-UTR-P-wetherbeei_contig636:4770..5289Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig636 4771..5289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.5221136-CDS-P-wetherbeei_contig636:3750..38821683186907.5221136-CDS-P-wetherbeei_contig636:3750..3882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig636 3751..3882 +
1683186907.5301297-CDS-P-wetherbeei_contig636:4032..47701683186907.5301297-CDS-P-wetherbeei_contig636:4032..4770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig636 4033..4770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig636.2.1prot_P-wetherbeei_contig636.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig636 3751..4770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig636.2.1

>prot_P-wetherbeei_contig636.2.1 ID=prot_P-wetherbeei_contig636.2.1|Name=mRNA_P-wetherbeei_contig636.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=290bp
MPSLQIGIFVNTLFAGVITTVSLLVPWCTFLYTANATYWPISVPVEVGLT
RCFGDTCRLRELAKGVPPIPNGGGGPLPTWGPPPVAVPDSGGAAGGAGAG
GVSPGGGYAGSYGGPPAAAAPAASHASGLPSPDSPAFPFFVAAVTAICLF
ALACALALVASGYEAARMRGRVSPRGQLPVGMTMWSSVCLLLAPLLYVAI
TAGPLNGGEYRVGLWVAFGGGVASVLVAFVTWLYADTAAAGYRTIGGGGG
GGGGSVQQGALPSVVAVRYDGGGGGGGASAGGGKIAVLL*
back to top

mRNA from alignment at P-wetherbeei_contig636:3242..5289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig636.2.1 ID=mRNA_P-wetherbeei_contig636.2.1|Name=mRNA_P-wetherbeei_contig636.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2048bp|location=Sequence derived from alignment at P-wetherbeei_contig636:3242..5289+ (Phaeothamnion wetherbeei SAG_119_79)
GTTGGTCGCATCTCCTATCCTTACCTCACCAATAGCTTGCAAGTGTCTTC
ACCACAGAGCGGCCCGAGAAGGTCAGCCAGAACCGCGCGAGGTAGGGATT
GTGGGAAAGTCAAGAAGATCCTCGGAGACGGGAGAGCGAACTGCCATACA
CCTCTCTTCTACCACCAAAGCTCAAGTTGGCTGCCACGGGGCAGCCCGAC
AACCAGCCTGCAGACGAACGGATTTGGTAAGGAGGAGAGATCTTTACAAG
TCAGAGATATCGCTGCAAACATGCATTCTCATCACCTTCCGCCCTGAGCA
AACCTTCCTCATAGAAGACGTATCCAGGGTGTTTCTGAAAGAAATCGACA
TATGCAACATTCGAGCTCTTTCTGCCACCAACCCACTACTTCCCGGCCCT
CTTTCTTCACACTCTCATCCTGAGGCAGTATTGGCAACGCGTAGCAAATT
GAGAGGCAAAGGAGACGAGCAGAAGAAAGAGGAGCCGGCAGGCTGTATAG
GCCGAAAACATGCCTAGCCTCCAGATCGGCATCTTTGTCAACACGCTATT
CGCGGGCGTCATCACCACCGTCTCCCTCCTTGTGCCTTGGTGCACATTCC
TTTACACTGCAAACGCTACATATTGGCCCATCTCTGTGCCTGTAAGCCGA
CAGTCATTGTTTCCTTACATTCCCGGTTTTGCTTGTTCTCCTGTTTCTGT
ACTGCTGGTTACGTTTCACGAGCCTCTGTCCTTCTCAGAAGCATTTTTCC
CACGCGCTGCTTCGCCACCATTCTTTCTGCATCAAGCTCAGGTCGAAGTC
GGCCTCACGAGATGCTTTGGTGACACGTGCCGCCTCCGCGAGCTGGCGAA
AGGCGTGCCGCCGATTCCCAACGGCGGTGGCGGCCCCCTACCGACGTGGG
GTCCCCCTCCTGTGGCCGTTCCCGACAGCGGCGGCGCCGCCGGCGGTGCC
GGTGCCGGCGGCGTTTCACCTGGCGGCGGCTACGCCGGCAGTTATGGTGG
TCCCCCAGCAGCGGCCGCCCCCGCGGCCTCGCACGCCTCGGGGCTCCCGA
GCCCGGACTCCCCTGCGTTCCCCTTCTTCGTCGCCGCTGTAACCGCCATC
TGCCTCTTCGCGCTGGCGTGCGCGCTGGCGCTGGTGGCCTCCGGCTACGA
GGCGGCGCGCATGCGGGGCCGCGTGAGCCCCCGTGGCCAGCTGCCGGTGG
GCATGACCATGTGGTCGAGCGTTTGCCTTCTTTTAGCGCCGCTGCTGTAC
GTGGCGATCACCGCCGGCCCGCTCAACGGCGGCGAGTACCGGGTCGGCCT
GTGGGTGGCGTTCGGCGGGGGCGTCGCGTCGGTGCTCGTGGCGTTTGTAA
CTTGGCTCTACGCCGACACCGCCGCCGCCGGCTACCGGACAATCGGCGGA
GGCGGCGGCGGCGGCGGAGGCAGCGTGCAGCAGGGAGCTCTGCCATCGGT
TGTGGCTGTACGGTACGACGGCGGCGGCGGGGGCGGCGGCGCGAGCGCCG
GCGGAGGCAAAATTGCCGTGCTGCTGTGATTTGGTGTACTAGCGAGGCGA
GATGGCCATGGTGCTTTGATTGATTGGCAAGTTTCGTTCGGCTGCTTGTT
TGACGCTCCTGCGGCTGACGCTCCCCGCTGCCGCGGTTGTGGACGACATT
TGAGTTTTCTGGCACGCTCAGTGGGTAAGGGCCGATTCGTTACGTGCAGA
GAGAAGCTGCAGTGGGAGGGAAATGGTGTCGCGATGTTTGACGGTATCCA
GCGCTTGTACTGGTGACGGGTAAAAACTCTCGCACTTCAAGGCCGTGCTG
CCTTTTAATGTCCTCGAAAAGATTACCGGTATCTTTTCCGGAGTGGAGAA
AATGAGCATAGTCCAAGGCGGTCAAAAGAATTGCAGCACGAACGAAGCAC
GTAAGGATTGCAACCGTTTCACGACGCGTTGCGAAAGACGCTTCAAAATG
AACTGGCGGCGAATTGAACCGTTTCCCGTTTCGACCACGGTGGGTTTGGT
CGGACAAGAACACAGGATGGACGACGGCAGGCGAAGAAACAGAAATCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig636:3242..5289+

>mRNA_P-wetherbeei_contig636.2.1 ID=mRNA_P-wetherbeei_contig636.2.1|Name=mRNA_P-wetherbeei_contig636.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig636:3242..5289+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTAGCCTCCAGATCGGCATCTTTGTCAACACGCTATTCGCGGGCGT
CATCACCACCGTCTCCCTCCTTGTGCCTTGGTGCACATTCCTTTACACTG
CAAACGCTACATATTGGCCCATCTCTGTGCCTGTCGAAGTCGGCCTCACG
AGATGCTTTGGTGACACGTGCCGCCTCCGCGAGCTGGCGAAAGGCGTGCC
GCCGATTCCCAACGGCGGTGGCGGCCCCCTACCGACGTGGGGTCCCCCTC
CTGTGGCCGTTCCCGACAGCGGCGGCGCCGCCGGCGGTGCCGGTGCCGGC
GGCGTTTCACCTGGCGGCGGCTACGCCGGCAGTTATGGTGGTCCCCCAGC
AGCGGCCGCCCCCGCGGCCTCGCACGCCTCGGGGCTCCCGAGCCCGGACT
CCCCTGCGTTCCCCTTCTTCGTCGCCGCTGTAACCGCCATCTGCCTCTTC
GCGCTGGCGTGCGCGCTGGCGCTGGTGGCCTCCGGCTACGAGGCGGCGCG
CATGCGGGGCCGCGTGAGCCCCCGTGGCCAGCTGCCGGTGGGCATGACCA
TGTGGTCGAGCGTTTGCCTTCTTTTAGCGCCGCTGCTGTACGTGGCGATC
ACCGCCGGCCCGCTCAACGGCGGCGAGTACCGGGTCGGCCTGTGGGTGGC
GTTCGGCGGGGGCGTCGCGTCGGTGCTCGTGGCGTTTGTAACTTGGCTCT
ACGCCGACACCGCCGCCGCCGGCTACCGGACAATCGGCGGAGGCGGCGGC
GGCGGCGGAGGCAGCGTGCAGCAGGGAGCTCTGCCATCGGTTGTGGCTGT
ACGGTACGACGGCGGCGGCGGGGGCGGCGGCGCGAGCGCCGGCGGAGGCA
AAATTGCCGTGCTGCTGTGA
back to top