mRNA_P-wetherbeei_contig636.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig636.1.1
Unique NamemRNA_P-wetherbeei_contig636.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A835ZB47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB47_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.310e-37
Identity = 83/148 (56.08%), Postives = 103/148 (69.59%), Query Frame = 1
Query:  199 SAHSYFNEDLAATFPLSSGLVPPPSIRR----AMTPRMLLDPFAAAAAAHFISSAPLDTTQLQA--SAPLPS-LILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDDDVDY 621
            + HS  +  L AT  +S+ +VP   + R    +  P MLL   AAAAAA  IS+AP  T  L+   + P+ S  +LSKTETREG YG Y V+V  Q+ +NA  TFKSKEATEKGKNKY+AVL +LLVGSF+IPMVQYWWYI+D+DVDY
Sbjct:    2 AVHSVLSLLLVATACVSAFVVPSGGLARVSARSQAPSMLLGGVAAAAAASIISTAPASTDYLRTLHNQPVNSWTMLSKTETREGFYGEYSVDVKEQEVDNADSTFKSKEATEKGKNKYNAVLLILLVGSFVIPMVQYWWYIRDEDVDY 149          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A7S2CEE7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEE7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.520e-29
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  259 VPPPSIRRAMTPRM----LLDPFAAAAAAHFISSAPLDTTQLQASAPLPSLI-LSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDD 609
            +P  S  RA+TPR     L+D  A AAAA  +SS P+DT+ L   A +P ++  +K ET+EG+YG Y+VEV  Q  ++A  TFKS +AT+KGKNKY AVLGVLLVGSF+IPM+QY+WY+++D
Sbjct:   21 LPRASFNRAVTPRAVPVALVDVAAGAAAAAVLSSQPMDTSMLSNMANVPMMVSATKYETKEGIYGEYQVEVKEQAVDDARSTFKSAKATKKGKNKYVAVLGVLLVGSFLIPMLQYFWYVRED 142          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: D8LTU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 5.370e-28
Identity = 64/118 (54.24%), Postives = 81/118 (68.64%), Query Frame = 1
Query:  271 SIRRAMTPRMLLD--PFAAAAAAHFISSAPLDTTQLQASAPLPSLILSKTETREGLYGSYEVEVGPQQRENAAG--TFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDDD 612
            S   A  PRM+L   PFA AA AH I S P++   L ++   P+ +++  ETREGLYG YEVEV  +  E   G  TFK KE TE+G++KY++VL VLL GSF+IPMVQYWWYI+DDD
Sbjct:   38 SAASASGPRMMLPMAPFAGAAVAHLIGSNPINPEHLVSAKSQPTHLVAYKETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDDD 155          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A7S2B691_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B691_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.810e-23
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  289 TPRMLLDPFAAAAAAHFISSAPLDTTQLQ-----ASAPLPSLILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDD 609
            TP   LD  AA  AA  + +A + TT ++     A    P  +  K ETREG+YG+YEVE+ PQ  ++AAGTFKSK+ T KGK KY AVLGVLL GSF+IPM+QY+WY+++D
Sbjct:   37 TPVAKLDSRAAGLAAASLLAASVATTAVEPVSAHAMYDAPMTVAVK-ETREGVYGTYEVEIKPQDVDDAAGTFKSKDDTVKGKKKYIAVLGVLLFGSFVIPMLQYFWYVRED 147          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A7R9U6V2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.290e-22
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  391 PSLILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDDD 612
            P +  ++TE R+G+Y  Y +E   QQ +NAA  FKSKE T  GKN+Y AVLGVL+VGSFIIPM QYWWYIKDD+
Sbjct:   60 PGIASAETEVRQGMYKEYTIEKKSQQYDNAASGFKSKEETASGKNRYVAVLGVLVVGSFIIPMAQYWWYIKDDE 133          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A6U4F5S3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F5S3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.040e-19
Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  226 LAATFPLSSGLVPPPSIRRAMTPRMLLDPFAAAAAAHFISSAPLDTTQLQASAPLPSLILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDDD 612
            LAA F  +S    P   R+A    M L      AAA  I +A L   Q  A+   PS   ++TE R+GLY  Y VE G Q+ ++A   +K+K+ T  GKN+Y  VLG LLVGSFIIPM Q+WWYIKDD+
Sbjct:    9 LAALFAGASAFTAPRGARKAAQVEMSLGKNLRTAAATAIVAAGL---QFGAA---PSF--AETEVRQGLYKEYTVETGAQKFDDATSKYKTKKETAGGKNRYIVVLGTLLVGSFIIPMAQFWWYIKDDE 129          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A7S2RT02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RT02_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.060e-19
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  226 LAATFPLSSGLVPPPSIRRAMTPRMLLDPFAAAAAAHF---------------ISSAPLDTTQLQASAPLPSLILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDD 609
            LAA F   S    P  +RR +TPR  L+  +A A A                 + S P D       AP+    +S  E R+G+YG YEV+V PQ  + A GTFK+   T+ GK KY +VLGVLL+GSF+IPM+QY+WY++++
Sbjct:   22 LAAAF---SRTAAPRPMRRVLTPRASLEGISAGAVAXXXXXXXXLSAGAGMVTVPSTPADHIFNMRDAPMT---VSAKELRQGVYGEYEVDVTPQAYDKADGTFKTAAKTKAGKTKYVSVLGVLLIGSFVIPMLQYFWYVREE 158          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A1Z5K6I3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K6I3_FISSO)

HSP 1 Score: 90.5 bits (223), Expect = 7.440e-19
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  391 PSLILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKDDD 612
            P+ +L++   REG+YG YE+++  Q+ ++A  TFKS + T+  K KY+A+L +L+VGSFIIPM QYWWY+KDDD
Sbjct:   65 PTQVLAEKVIREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQYWWYVKDDD 138          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A8J2SRR3_9STRA (Inorganic diphosphatase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRR3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.470e-17
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  226 LAATFPLSSGLVPPPSIRRAMTPRMLLDPFAAAAAAHFISSAPLDTTQLQASAPLPSLILSKTETREGLYGSYEVEV--GPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKD 606
            L A    +S  V P +  R  T   ++D   AAA    ++SAP+D  +L +  P  +L  ++T TREGLYG Y VE+   P   ++A  TFK++  T+KGKNKY  +  VLL GSF+IPM QY+WY++D
Sbjct:    4 LLALLGAASAFVGPAAAPRQPTKLNVVDAALAAA----LASAPVDVAKLNSRLPTTTLAKTRTITREGLYGDYTVEIIDEPNPLDDARSTFKTRAQTKKGKNKYLGLFVVLLFGSFVIPMAQYFWYVRD 128          
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Match: A0A7S2JTQ0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTQ0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.110e-17
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  313 FAAAAAAHFISSAPLDTTQLQASAPLPSLILSKTETREGLYGSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQYWWYIKD 606
            FAAA  A  + + P D      SA  PS ++S+  TREG+YG+Y+V++  Q+ ++A  TFK K  T+  K KY+A+L VL+VGSFIIPM QY+WY+KD
Sbjct:   39 FAAATIASNLVTPPADAMDFN-SAVFPSTVVSEKVTREGMYGTYDVDL-VQEVDDARSTFKPKAETKSKKGKYTALLSVLVVGSFIIPMAQYFWYVKD 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig636.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB47_9STRA2.310e-3756.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CEE7_9STRA1.520e-2954.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D8LTU5_ECTSI5.370e-2854.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B691_9STRA5.810e-2352.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9U6V2_9STRA3.290e-2262.16Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4F5S3_9STRA5.040e-1946.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RT02_9STRA5.060e-1940.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K6I3_FISSO7.440e-1952.70Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A8J2SRR3_9STRA1.470e-1742.64Inorganic diphosphatase n=2 Tax=Pelagomonas calceo... [more]
A0A7S2JTQ0_9STRA3.110e-1748.98Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig636contigP-wetherbeei_contig636:2..1439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTU5
Model size795
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue7e-31
EggNOG OGs2CAH2@1|root,2SAK7@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_002720.1
Cds size339
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig636.1.1prot_P-wetherbeei_contig636.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig636 173..1154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.4264057-UTR-P-wetherbeei_contig636:1..1721683186907.4264057-UTR-P-wetherbeei_contig636:1..172Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig636 2..172 -
1683186907.482177-UTR-P-wetherbeei_contig636:1154..14391683186907.482177-UTR-P-wetherbeei_contig636:1154..1439Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig636 1155..1439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186907.4435606-CDS-P-wetherbeei_contig636:172..1871683186907.4435606-CDS-P-wetherbeei_contig636:172..187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig636 173..187 -
1683186907.4548564-CDS-P-wetherbeei_contig636:386..4161683186907.4548564-CDS-P-wetherbeei_contig636:386..416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig636 387..416 -
1683186907.4661014-CDS-P-wetherbeei_contig636:585..6961683186907.4661014-CDS-P-wetherbeei_contig636:585..696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig636 586..696 -
1683186907.4742346-CDS-P-wetherbeei_contig636:971..11541683186907.4742346-CDS-P-wetherbeei_contig636:971..1154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig636 972..1154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig636.1.1

>prot_P-wetherbeei_contig636.1.1 ID=prot_P-wetherbeei_contig636.1.1|Name=mRNA_P-wetherbeei_contig636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MTPRMLLDPFAAAAAAHFISSAPLDTTQLQASAPLPSLILSKTETREGLY
GSYEVEVGPQQRENAAGTFKSKEATEKGKNKYSAVLGVLLVGSFIIPMVQ
YWWYIKDDDVDY*
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mRNA from alignment at P-wetherbeei_contig636:2..1439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig636.1.1 ID=mRNA_P-wetherbeei_contig636.1.1|Name=mRNA_P-wetherbeei_contig636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1438bp|location=Sequence derived from alignment at P-wetherbeei_contig636:2..1439- (Phaeothamnion wetherbeei SAG_119_79)
GGAGAAATGAGGAGCACCGTGGCGTTACTGGTTGGTCTCGTTGGTCTCGC CAATGTCCGGGCTTTCCTGGTGCCGGCAGGTACAGAGGAGAAGGAAGGAC TTTGAACATGTTCATGTTTTGCATCCTGGCGCTAGAGCTACGGCGCAGCA CCTCCTGCTTCCTCTTTGTGGTTTCTTAGACGCTCCTGTTCCCTGCCTTC AGCACATTCCTATTTTAACGAGGATCTTGCTGCTACTTTTCCCCTTTCCT CAGGCTTGGTACCGCCCCCATCGATTCGCAGAGCGATGACACCGCGTATG CTTCTCGACCCGTTCGCAGCGGCGGCAGCCGCACATTTCATCAGCTCGGC GCCGCTTGACACGACGCAGTTGCAAGCGTCGGCGCCGTTGCCGAGCCTCA TCTTGTCGAAGACGGAGACTCGAGAGGGACTTTACGGGTCCTACGAGGTC GAAGTCGGCCCTCAGCAGGTGTGTATCGCATTCCGATCTTCTTTAAGTTT TTGGCGCGCGCAGGGGTTTAACATTAGCGAAATTATGATTCCATTTTGTT CCCCCTACGATAGAGCTGCGATTCAGTTACGTTCACCTTGCCCGACCCAT ACCTGCTGTGCGCGCAATTGAATGTAATGTGCGTGCATAGCGAACGTCGG TTTACCGTACTCTCCACGCAATTCCCTCAAATCCCCCTGAAATCTCCTCC CGGCCCCCTTCTGCCCCCCTCCGCCGCCGCCGGATCCCGCTAGCGCGAGA ACGCGGCGGGGACGTTTAAGTCGAAGGAGGCGACGGAGAAGGGCAAGAAC AAGTACTCCGCCGTGCTCGGCGTCCTGCTCGTCGGATCATTCATCATTCC TATGGTGCGTTTGGTGGTCCCGCTTGCATTTTCCCTCCTTTACCATAGCT TCTGGCAGAGAGGAAAAGCAAGGTCAGGAAGTGTTGCCTGCCTGCTGCTC TTGCTCTTTCGAGAGGTTTTGACCCACGTTCTGCTTCCCAACTCACTGCC TTGAAAAACTGCTTGCAATGCAGGTCCAATACTGGTGGTATATCAAGGAT GATGTGAGTCGGGTTTTCTACAGCGCGATATTCCTCGTATTCTTCTATTC TTATAAGAATGATTAATGTCAGTTTCGTTTGAGCATCGCTTCGATCCATT CCGCTGCGACAGATGCAATAGGAAGGATAACCCACCGTTTCGGGGAAATT GCTGCACATTCCGACTGACTCTTATTCCCTTTCTCCTTTTCTCCCTCTTC AGGACGTTGACTACTGAGGTAGAAGCCAGCTAACGGGAGTTTGTGGTGGC GGCGGCGGCGGCTAGGGTGCAAATCGGAGCGACAAGGAAAGGCCGGTGTG AGCCATCCGTTGGCGCCACTGCAAGAGAGGGAAGCAAGAGTTTGCAGCGG TTATTGGGTCCTGTACGTACGTAGCAAGCCTGGTGCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig636:2..1439-

>mRNA_P-wetherbeei_contig636.1.1 ID=mRNA_P-wetherbeei_contig636.1.1|Name=mRNA_P-wetherbeei_contig636.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig636:2..1439- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACCGCGTATGCTTCTCGACCCGTTCGCAGCGGCGGCAGCCGCACA
TTTCATCAGCTCGGCGCCGCTTGACACGACGCAGTTGCAAGCGTCGGCGC
CGTTGCCGAGCCTCATCTTGTCGAAGACGGAGACTCGAGAGGGACTTTAC
GGGTCCTACGAGGTCGAAGTCGGCCCTCAGCAGCGCGAGAACGCGGCGGG
GACGTTTAAGTCGAAGGAGGCGACGGAGAAGGGCAAGAACAAGTACTCCG
CCGTGCTCGGCGTCCTGCTCGTCGGATCATTCATCATTCCTATGGTCCAA
TACTGGTGGTATATCAAGGATGATGACGTTGACTACTGA
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