mRNA_P-wetherbeei_contig6350.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6350.1.1
Unique NamemRNA_P-wetherbeei_contig6350.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A6H5KBZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.690e-31
Identity = 63/75 (84.00%), Postives = 64/75 (85.33%), Query Frame = 2 
Query:  884 GVAATKKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            G    KK+K  GLRRGKWT EEE YANRLIQEFK GLLPL DGTTLRTFLSIMLNCDPMRISKKFVG NCIGKQV
Sbjct:  106 GRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQV 180
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: D8LTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT9_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 6.320e-30
Identity = 63/75 (84.00%), Postives = 64/75 (85.33%), Query Frame = 2 
Query:  884 GVAATKKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            G    KK+K  GLRRGKWT EEE YANRLIQEFK GLLPL DGTTLRTFLSIMLNCDPMRISKKFVG NCIGKQV
Sbjct:  104 GRGGHKKQKPPGLRRGKWTPEEEKYANRLIQEFKAGLLPLTDGTTLRTFLSIMLNCDPMRISKKFVGSNCIGKQV 178
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A7S1U7I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 8.040e-30
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 2 
Query:  899 KKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            KK K++GLRRGKWT+EEE YANRLIQEFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:   50 KKAKSNGLRRGKWTAEEEAYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQV 119
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A8J9X6A0_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6A0_PHATR)

HSP 1 Score: 118 bits (296), Expect = 7.600e-29
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  878 SIGVAATKKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            ++ V    K+K   LRRGKWT EEE YANRLI EFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:   41 ALAVIPNNKKKGPPLRRGKWTPEEEAYANRLILEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQV 117
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A6U0XNE9_9STRA (Hypothetical protein n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XNE9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.570e-28
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 2 
Query:  893 ATKKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            ++K++K +GLRRGKWTSEEE YANRLIQEFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:  169 SSKQKKTNGLRRGKWTSEEENYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQV 240
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A7S2NX07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX07_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.800e-27
Identity = 57/70 (81.43%), Postives = 59/70 (84.29%), Query Frame = 2 
Query:  899 KKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            K +K   LRRGKWT EEE YANRLI EFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:  154 KSKKGPALRRGKWTPEEEAYANRLILEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQV 223
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A7S2V6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.220e-27
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 2 
Query:  914 SGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            S LRRGKWT EEE YA RLIQEFK GLLPL DGTTLRTFLS +LNC+PMRISKKFVG NCIGKQV
Sbjct:   18 SALRRGKWTPEEEAYATRLIQEFKSGLLPLADGTTLRTFLSKLLNCEPMRISKKFVGSNCIGKQV 82
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: D8LN59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN59_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.090e-27
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  899 KKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            K +K +GLRRGKWTSEEE YANRLIQEFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:  256 KAKKPNGLRRGKWTSEEEDYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQV 325
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BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A6H5KTB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.240e-27
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  899 KKRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            K +K +GLRRGKWTSEEE YANRLIQEFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:  345 KAKKPNGLRRGKWTSEEEDYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQV 414
[Close]
BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Match: A0A7S2DAB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAB7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 6.610e-27
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  902 KRKASGLRRGKWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFVGPNCIGKQV 1108
            K+  SGLRRGKWT EEE YANRLIQEFK GLLPL DGTTLRTFLS +LNCDPMRISKKFVG NCIGKQV
Sbjct:   50 KKSTSGLRRGKWTPEEESYANRLIQEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQV 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6350.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBZ4_9PHAE1.690e-3184.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT9_ECTSI6.320e-3084.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1U7I4_9STRA8.040e-3085.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J9X6A0_PHATR7.600e-2975.32Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A6U0XNE9_9STRA5.570e-2883.33Hypothetical protein n=3 Tax=Rhizochromulina marin... [more]
A0A7S2NX07_9STRA2.800e-2781.43Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2V6K2_9STRA3.220e-2784.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D8LN59_ECTSI4.090e-2785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB0_9PHAE4.240e-2785.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DAB7_9STRA6.610e-2785.51Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6350contigP-wetherbeei_contig6350:269..1718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTT9
Model size1108
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.43e-31
EggNOG OGs28HE3@1|root,2QPS9@2759|Eukaryota
Cds size1077
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.7997913-CDS-P-wetherbeei_contig6350:268..4001683186906.7997913-CDS-P-wetherbeei_contig6350:268..400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6350 269..400 -
1683186906.80992-CDS-P-wetherbeei_contig6350:742..16871683186906.80992-CDS-P-wetherbeei_contig6350:742..1687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6350 743..1687 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.818302-UTR-P-wetherbeei_contig6350:1687..17181683186906.818302-UTR-P-wetherbeei_contig6350:1687..1718Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6350 1688..1718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6350.1.1prot_P-wetherbeei_contig6350.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6350 269..1687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6350.1.1

>prot_P-wetherbeei_contig6350.1.1 ID=prot_P-wetherbeei_contig6350.1.1|Name=mRNA_P-wetherbeei_contig6350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=359bp
MSPIVKKEEPVVQREARRRHSLPPLELEVGRGRNGNFAKPERGASKNGGD
SREASPRAPGSPAKQRGYSQLTQELDALIRRSESDKEAKPAVPATAGVTV
AAPATATTAASVKSASGEPAAAKTNAGTSMAGRGAGASAGGSSPGVGHGR
ATSARAAAASAAAAAAAAAAASADAMLPVSPRGGGGVGRINVGASSTGLP
ANPSPRATNGPASGLRLRSAVSIQNLEAAATAAAEADGLLRAASSGSGSS
GRTGGTRNSGHGGGGGGSSGGSGGGGGGSGSGSIGVAATKKRKASGLRRG
KWTSEEEGYANRLIQEFKCGLLPLQDGTTLRTFLSIMLNCDPMRISKKFV
GPNCIGKQV
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mRNA from alignment at P-wetherbeei_contig6350:269..1718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6350.1.1 ID=mRNA_P-wetherbeei_contig6350.1.1|Name=mRNA_P-wetherbeei_contig6350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1450bp|location=Sequence derived from alignment at P-wetherbeei_contig6350:269..1718- (Phaeothamnion wetherbeei SAG_119_79)
GTGGGGCTTACTCAGGTGCGTTCGGGATGGCATGTCTCCGATAGTGAAGA
AGGAGGAACCGGTCGTGCAGCGGGAAGCAAGGCGGCGCCACAGCCTCCCC
CCTTTGGAACTCGAGGTTGGCCGAGGACGGAACGGGAACTTCGCGAAGCC
CGAGCGGGGTGCGTCCAAAAACGGTGGAGACAGCAGGGAGGCATCTCCGC
GTGCGCCGGGGTCGCCGGCGAAGCAGCGCGGCTATTCGCAGCTCACGCAG
GAGCTCGACGCGCTCATTCGACGTTCCGAAAGTGACAAAGAGGCAAAGCC
GGCTGTGCCGGCCACCGCGGGCGTCACGGTCGCTGCACCCGCAACTGCCA
CCACCGCCGCCTCTGTGAAGTCCGCTTCCGGCGAGCCGGCGGCGGCGAAA
ACGAACGCCGGCACCAGCATGGCTGGGCGTGGGGCTGGTGCGTCCGCCGG
CGGCTCATCCCCTGGCGTCGGCCATGGCCGTGCGACCAGCGCCCGCGCGG
CCGCCGCATCCGCCGCCGCCGCTGCGGCTGCTGCAGCCGCCGCGAGCGCC
GACGCCATGCTCCCTGTATCTCCGAGGGGCGGCGGCGGCGTCGGACGCAT
CAACGTGGGAGCGTCCTCCACCGGCCTCCCGGCGAACCCGTCTCCCCGCG
CGACGAATGGTCCCGCCTCCGGCCTGCGGTTGCGCAGCGCCGTTTCCATC
CAGAACCTCGAGGCAGCAGCGACAGCGGCCGCCGAAGCCGACGGCCTGCT
GCGGGCGGCATCCTCCGGCTCCGGATCGTCAGGAAGGACGGGTGGCACGA
GGAACAGCGGCCATGGCGGTGGCGGCGGTGGCAGCAGCGGCGGCAGCGGC
GGCGGAGGCGGTGGCAGCGGAAGTGGAAGCATCGGCGTTGCCGCCACGAA
AAAACGAAAGGCGTCGGGATTACGGCGCGGCAAGTGGACCTCCGAGGAGG
AAGGCTACGCCAACCGCCTCATTCAGGTTGGTTCGGGATGTGCTTTTCCT
GCGTTGAAAGCCGCTTCAACCGCTATGTTCGGCAGTGCTGCTACTCCCTT
GTTCTCTTTCCCTGGCGCCACATTGCAGTCATAATTCGGGGAGAAGTTTC
TTTGTGTGTCGTCCTCTTTTTGGCCAGCCTCCTGGCCTTTTTCGTGTGCT
GCCTGCACATCTTCCGTGCTGCCATTATTTTCCCCTCTTGCGGCGTAACG
TACACCTGTTTTTAGTTCCGGTCCCACATTACATCCAGCGACCAAGATTT
TCTTTTCGCTCTTCTCCCGCCGCTGCGCTGATCACTTTCTGTCGTTTTTC
CTTTTCGTTTCGCCGCAGGAGTTCAAGTGCGGCCTGCTTCCGCTTCAGGA
CGGCACGACGCTGCGGACGTTCCTCAGCATCATGCTCAACTGCGACCCAA
TGCGCATCTCCAAGAAATTCGTCGGCCCCAACTGCATCGGGAAGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6350:269..1718-

>mRNA_P-wetherbeei_contig6350.1.1 ID=mRNA_P-wetherbeei_contig6350.1.1|Name=mRNA_P-wetherbeei_contig6350.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig6350:269..1718- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCCGATAGTGAAGAAGGAGGAACCGGTCGTGCAGCGGGAAGCAAG
GCGGCGCCACAGCCTCCCCCCTTTGGAACTCGAGGTTGGCCGAGGACGGA
ACGGGAACTTCGCGAAGCCCGAGCGGGGTGCGTCCAAAAACGGTGGAGAC
AGCAGGGAGGCATCTCCGCGTGCGCCGGGGTCGCCGGCGAAGCAGCGCGG
CTATTCGCAGCTCACGCAGGAGCTCGACGCGCTCATTCGACGTTCCGAAA
GTGACAAAGAGGCAAAGCCGGCTGTGCCGGCCACCGCGGGCGTCACGGTC
GCTGCACCCGCAACTGCCACCACCGCCGCCTCTGTGAAGTCCGCTTCCGG
CGAGCCGGCGGCGGCGAAAACGAACGCCGGCACCAGCATGGCTGGGCGTG
GGGCTGGTGCGTCCGCCGGCGGCTCATCCCCTGGCGTCGGCCATGGCCGT
GCGACCAGCGCCCGCGCGGCCGCCGCATCCGCCGCCGCCGCTGCGGCTGC
TGCAGCCGCCGCGAGCGCCGACGCCATGCTCCCTGTATCTCCGAGGGGCG
GCGGCGGCGTCGGACGCATCAACGTGGGAGCGTCCTCCACCGGCCTCCCG
GCGAACCCGTCTCCCCGCGCGACGAATGGTCCCGCCTCCGGCCTGCGGTT
GCGCAGCGCCGTTTCCATCCAGAACCTCGAGGCAGCAGCGACAGCGGCCG
CCGAAGCCGACGGCCTGCTGCGGGCGGCATCCTCCGGCTCCGGATCGTCA
GGAAGGACGGGTGGCACGAGGAACAGCGGCCATGGCGGTGGCGGCGGTGG
CAGCAGCGGCGGCAGCGGCGGCGGAGGCGGTGGCAGCGGAAGTGGAAGCA
TCGGCGTTGCCGCCACGAAAAAACGAAAGGCGTCGGGATTACGGCGCGGC
AAGTGGACCTCCGAGGAGGAAGGCTACGCCAACCGCCTCATTCAGGAGTT
CAAGTGCGGCCTGCTTCCGCTTCAGGACGGCACGACGCTGCGGACGTTCC
TCAGCATCATGCTCAACTGCGACCCAATGCGCATCTCCAAGAAATTCGTC
GGCCCCAACTGCATCGGGAAGCAGGTG
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