mRNA_P-wetherbeei_contig635.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig635.1.1
Unique NamemRNA_P-wetherbeei_contig635.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: D7FJY6_ECTSI (Hydrocephalus-inducing protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.320e-52
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   10 PGENDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVFAL 459
            P +NDGSLDFG+ RVG+S    F LRNRGKY +AFA R RR   A LF++EP+ G + PG AVEV +TFCSR E   + NRDIRC I+EP TGE VE F V  +A +TWSRFR+QP RG+NFG V ++A   TKTFELKNEGE +F FA+
Sbjct: 3367 PRKNDGSLDFGRKRVGDSANERFTLRNRGKYKIAFAFRMRRGIAASLFKVEPSQGVVEPGQAVEVCVTFCSREETHLKDNRDIRCVITEPHTGEAVEEFSVVASAISTWSRFRLQPRRGINFGPVAFNADSMTKTFELKNEGEFEFAFAV 3516          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: A0A6H5K5Z3_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.100e-51
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   10 PGENDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVFAL 459
            P +NDGSLDFG+ RVG+S    F LRNRGKY +AFA R RR   A LF++EP+ G + PG AVEV +TFCS  E   + NRDIRC I+EP TGE VE F V  +A +TWSRFR+QP RG+NFG V ++A   TKTFELKNEGE +FVFA+
Sbjct: 3502 PRKNDGSLDFGRQRVGDSANERFTLRNRGKYKIAFAFRMRRGIAAALFKVEPSQGLVEPGQAVEVCVTFCSTEETHLKDNRDIRCVITEPHTGEAVEEFSVVASAISTWSRFRLQPRRGINFGPVAFNADSMTKTFELKNEGEFEFVFAV 3651          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: A0A835YSX5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSX5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.110e-45
Identity = 86/146 (58.90%), Postives = 109/146 (74.66%), Query Frame = 1
Query:   25 GSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGV-QTKTFELKNEGEADFVFAL 459
            G+LDFG++RVG++ RR F L NRGKY +A+ALR RRA+ A LF +EPA G +APGAAVE+ +T  + AEV  RGN D+RC I+EPRTGE VE F   + AAA W R R  P+RGV+FGAV ++AG  QT+ FELKNEG+ +  FAL
Sbjct:    1 GTLDFGRVRVGDAVRRSFRLVNRGKYDIAYALRFRRAAAAALFALEPAGGALAPGAAVEIGVTLHAAAEVHLRGNLDLRCTITEPRTGEAVEEFAACIDAAAVWPRLRALPSRGVDFGAVAFNAGAPQTRAFELKNEGDFECAFAL 146          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: A0A7S2QVW6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVW6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.400e-41
Identity = 78/147 (53.06%), Postives = 104/147 (70.75%), Query Frame = 1
Query:   19 NDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVFAL 459
            NDG +DF +LRVG++    F+LRNRGKY +++    RR   A LF+IEPA G I PGAA EV+LTF S  EV  + NRDI+C ISEP TGE VE F V+V+  + +SR R+QPARG+NFGA+ ++   +T+ FELKNEG  ++ F +
Sbjct: 2261 NDGVVDFDKLRVGDTASHKFSLRNRGKYEISYDFSFRRPGVAHLFKIEPANGTIEPGAAAEVTLTFTSLEEVSLKNNRDIKCVISEPHTGEAVENFTVSVSVTSHFSRLRLQPARGLNFGAIKYNEEPKTRRFELKNEGLFEYTFTV 2407          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: A0A7S1U1U7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1U7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.390e-35
Identity = 65/135 (48.15%), Postives = 89/135 (65.93%), Query Frame = 1
Query:   25 GSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKN 429
            G++DFG++RVG++  R F L NRGKY + F    RR +     ++EP  G IAPG +V+V +T C+   V    NRD+RC ISEP TGE VE F V + A A WS FR+QP RG+NFGA+ ++A  +++  ELKN
Sbjct:   44 GTVDFGRIRVGDTMARAFKLWNRGKYDIGFGFTLRRRALPKCLKVEPMEGTIAPGESVDVLVTLCTTEAVHFVDNRDLRCAISEPSTGEAVEEFSVNLLAEAVWSTFRLQPGRGLNFGALKFNAESRSRRLELKN 178          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: F0Y448_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN)

HSP 1 Score: 132 bits (333), Expect = 5.600e-33
Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = 1
Query:   25 GSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGE 438
            G+LDFGQ+RVGE+ + GFALRNRGKY  +F    RRA+   +F + P+ G I    +V V ++FCSR EV    N+DI C ISEP TGE VE F V V A + + RFR+QP RG+ FG V ++   + + F+L+NEG+
Sbjct: 2820 GTLDFGQMRVGETAQLGFALRNRGKYDFSFKFGFRRAAYTEIFSVSPSEGLIEADGSVRVVVSFCSRGEVKLSDNKDISCTISEPITGEAVESFPVTVAATSLFPRFRVQPGRGLTFGTVKFNDPPKERKFDLRNEGK 2957          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: A0A2D4C138_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C138_PYTIN)

HSP 1 Score: 124 bits (311), Expect = 5.110e-30
Identity = 68/152 (44.74%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    1 VSNPGENDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRA-EVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVF 453
             ++PG  DGSLDFG +RVGES  R F++RNRGKY + F L  R      LF +EP    +AP +   VS+TF +R  EV  + N+DI+C I E  T E    F V  +A A +S FR+QP RG++FGA+ +    +TK  E++N+GE  F F
Sbjct: 2669 ATSPGARDGSLDFGLVRVGESHSRSFSIRNRGKYDIKFVLALRSPLARELFHVEPVEQVLAPDSLARVSVTFLARRHEVTLKDNKDIKCTIVEMLTREPCADFLVLTSARAVFSAFRLQPQRGISFGALKFSDKPRTKRLEIRNDGEFVFKF 2820          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: G4YFM7_PHYSP (ASH domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=G4YFM7_PHYSP)

HSP 1 Score: 123 bits (308), Expect = 1.290e-29
Identity = 65/148 (43.92%), Postives = 91/148 (61.49%), Query Frame = 1
Query:   10 PGENDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVF 453
            P   DGSLDFG +RVGE   R F +RNRGKY V + +  R A+T   F I+P+   + PG +  V++TF S++EV  R  +DI+C I E  +GE    F V  +A + +S+FR+QP RG+NFG   +    QTK  E++N+GE  F F
Sbjct: 2187 PVGGDGSLDFGLVRVGEKHSRSFNIRNRGKYNVKYIIAIRSAATREYFTIDPSEMVLEPGQSSSVNVTFTSKSEVTLRDCKDIKCTIIEMLSGEACREFYVYTSARSVFSKFRLQPNRGINFGPHKYSDQAQTKRIEIRNDGEFPFKF 2334          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: A0A8J5IVY9_9STRA (ASH domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IVY9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.750e-29
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   22 DGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVF 453
            DG+LDFG +RVGE   R F +RNRGKY + + +  R A+T   F IEP+   + PG +  V++TF S++EV  R  +DI+C I E  +GE    F V  +A + +S+FR+QP RG+NFG   ++   QTK  E++N+GE  F F
Sbjct: 1831 DGNLDFGLVRVGEKHSRAFNIRNRGKYSIKYIIGIRSAATRECFTIEPSEMVLEPGQSSSVNVTFTSKSEVTLRDCKDIKCTIIEMLSGEVCREFYVHTSARSVFSKFRLQPNRGINFGPHKYNDQAQTKRIEIRNDGEFPFKF 1974          
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Match: W2PLM0_PHYPN (ASH domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLM0_PHYPN)

HSP 1 Score: 122 bits (305), Expect = 3.280e-29
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   19 NDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGLFRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVERFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFVF 453
            NDG+LDFG +RVGE   R F +RNRGKY + + +  R A+    F IEP    + PG +  V++TF S++EV  R  +DI+C I E  TGE    F V  +A + +S+FR+QP RG+NFG   ++   QT+  E++N+GE  F F
Sbjct: 2765 NDGNLDFGLVRVGEKHSRAFNIRNRGKYNIKYIIGIRSAAAREYFTIEPNEMVLEPGQSSSVNVTFTSKSEVTLRDCKDIKCTIIEMLTGEACREFYVHTSARSVFSKFRLQPNRGINFGPHKYNDPAQTQRIEIRNDGEFQFKF 2909          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig635.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJY6_ECTSI4.320e-5260.67Hydrocephalus-inducing protein, Hydin-like protein... [more]
A0A6H5K5Z3_9PHAE1.100e-5160.67MSP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YSX5_9STRA2.110e-4558.90Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2QVW6_9STRA6.400e-4153.06Hypothetical protein n=2 Tax=Triparma pacifica Tax... [more]
A0A7S1U1U7_9STRA1.390e-3548.15Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0Y448_AURAN5.600e-3349.28Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2D4C138_PYTIN5.110e-3044.74Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
G4YFM7_PHYSP1.290e-2943.92ASH domain-containing protein n=9 Tax=Phytophthora... [more]
A0A8J5IVY9_9STRA1.750e-2943.75ASH domain-containing protein n=1 Tax=Phytophthora... [more]
W2PLM0_PHYPN3.280e-2943.45ASH domain-containing protein n=11 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig635contigP-wetherbeei_contig635:47..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJY6
Preferred nameHYDIN
PFAMsASH,Hydin_ADK,Motile_Sperm,PapD-like
Model size459
Max annot lvl2759|Eukaryota
KEGG koko:K17570
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0002064,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009888,GO:0009987,GO:0016043,GO:0021591,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032838,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060271,GO:0060322,GO:0060429,GO:0060438,GO:0060541,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904158,GO:1990716,GO:1990718
Exons1
Evalue7.09e-53
EggNOG OGs28HT9@1|root,2QQ4F@2759|Eukaryota
Descriptionaxonemal central apparatus assembly
Cds size459
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.667433-CDS-P-wetherbeei_contig635:46..5051683186906.667433-CDS-P-wetherbeei_contig635:46..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig635 47..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig635.1.1prot_P-wetherbeei_contig635.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig635 47..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig635.1.1

>prot_P-wetherbeei_contig635.1.1 ID=prot_P-wetherbeei_contig635.1.1|Name=mRNA_P-wetherbeei_contig635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
VSNPGENDGSLDFGQLRVGESRRRGFALRNRGKYPVAFALRPRRASTAGL
FRIEPAVGDIAPGAAVEVSLTFCSRAEVFCRGNRDIRCQISEPRTGETVE
RFDVAVTAAATWSRFRMQPARGVNFGAVPWDAGVQTKTFELKNEGEADFV
FAL
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mRNA from alignment at P-wetherbeei_contig635:47..505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig635.1.1 ID=mRNA_P-wetherbeei_contig635.1.1|Name=mRNA_P-wetherbeei_contig635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig635:47..505+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCAATCCGGGCGAAAATGACGGGTCGCTAGACTTTGGGCAGCTGCG TGTCGGCGAGAGCCGCCGGCGCGGCTTTGCGCTCCGCAACCGCGGCAAGT ATCCTGTTGCCTTTGCGCTACGGCCCCGCCGCGCCTCCACTGCAGGCCTC TTCCGGATCGAACCGGCCGTCGGCGACATCGCGCCGGGCGCTGCTGTCGA GGTAAGCCTCACGTTCTGTTCGCGCGCCGAGGTGTTCTGCCGCGGCAACC GTGACATCCGCTGCCAGATCTCCGAGCCGCGGACGGGCGAAACGGTCGAG CGTTTCGACGTCGCCGTGACCGCCGCCGCCACTTGGAGCCGCTTCCGGAT GCAGCCGGCGCGCGGCGTCAATTTCGGCGCTGTGCCATGGGACGCTGGCG TGCAGACCAAGACGTTCGAGCTCAAGAACGAGGGCGAGGCGGACTTTGTA TTTGCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig635:47..505+

>mRNA_P-wetherbeei_contig635.1.1 ID=mRNA_P-wetherbeei_contig635.1.1|Name=mRNA_P-wetherbeei_contig635.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig635:47..505+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCAATCCGGGCGAAAATGACGGGTCGCTAGACTTTGGGCAGCTGCG
TGTCGGCGAGAGCCGCCGGCGCGGCTTTGCGCTCCGCAACCGCGGCAAGT
ATCCTGTTGCCTTTGCGCTACGGCCCCGCCGCGCCTCCACTGCAGGCCTC
TTCCGGATCGAACCGGCCGTCGGCGACATCGCGCCGGGCGCTGCTGTCGA
GGTAAGCCTCACGTTCTGTTCGCGCGCCGAGGTGTTCTGCCGCGGCAACC
GTGACATCCGCTGCCAGATCTCCGAGCCGCGGACGGGCGAAACGGTCGAG
CGTTTCGACGTCGCCGTGACCGCCGCCGCCACTTGGAGCCGCTTCCGGAT
GCAGCCGGCGCGCGGCGTCAATTTCGGCGCTGTGCCATGGGACGCTGGCG
TGCAGACCAAGACGTTCGAGCTCAAGAACGAGGGCGAGGCGGACTTTGTA
TTTGCGCTG
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