mRNA_P-wetherbeei_contig6346.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6346.2.1
Unique NamemRNA_P-wetherbeei_contig6346.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6346.2.1 vs. uniprot
Match: A0A7S4DBW3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBW3_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 1.520e-13
Identity = 55/170 (32.35%), Postives = 89/170 (52.35%), Query Frame = 1 
Query:   13 YSTAVAYCEDILLDVSNSTGNGNRPLNYTWEEEAGHFGVAVAVANDSNNGTLQVDAGSFQSGT-WSFTVMLTNWLGESTTATVAILWTRYSVPSIAIDGGTSQTTRRGSALRLYSRATVCG----TEPSYLAYTWT-ETLHG--LSFTSMSTNPRYLTLAPFTLTAATNY 498
            YS +V+ C+DI LD + S+G   R L++ W+  +       +     N+  + +       GT ++F +  TN+LG S++ T  +  +  S+PS+AID G+S T  R   L LY+ AT  G    T+ S + Y+W  +   G  L   S S+NPR L L  ++L+A  +Y
Sbjct:  291 YSDSVSSCDDIELDSTASSGGAGRTLSFAWDVISPSNSGFQSYIRSINDSEVTISNSGLSPGTTYTFVLNATNFLGGSSSKTFEVYVSSASLPSVAIDKGSSLTMTRDDELSLYATATYSGCENVTDSSQITYSWILQDSQGDELDMESTSSNPRKLKLDAYSLSAGVDY 460
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BLAST of mRNA_P-wetherbeei_contig6346.2.1 vs. uniprot
Match: A0A7S2RS68_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RS68_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.080e-5
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 1 
Query:   40 DILLDVSNSTGNGNRPLNYTWE------EEAGHFGVAVAVANDSNNGTLQVDAGSFQSG-TWSFTVMLTNWLGESTTATVAILWTRYSVPSIAIDGGTSQTTRRGSALRL-----YSRATVCGTEPSYLAYTW-------------TETLHGLSFTSM----STNPRYLTLAPFTLTAATNYSFGV 510
            +ILLD S ST      L++++       E+       +  A+D     L +D G   SG T++FT+ LT+WLG+ +  +  I     S+P++ IDG  S + +R  AL L     + R    G       + W             T  + G+  + +    S N R+LTL   TLTA T Y F V
Sbjct: 1463 EILLDASTSTMGARSSLSWSFSTTSSDTEKNSDIETFLNTADDKF--VLFLDGGLLTSGDTYTFTITLTDWLGQESETSSIISKEAASLPTVEIDGPGSYSIKRSQALSLKAIGAFKRCVEEGVVNDAFKFRWFLKEGDLEVIAEETAEIDGVVLSRLKETNSANDRHLTLPSDTLTAGTTYEFVV 1646
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6346.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DBW3_HETAK1.520e-1332.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RS68_9STRA4.080e-529.03Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6346contigP-wetherbeei_contig6346:1443..2980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI39369
PFAMsGPS,Laminin_G_3,PKD_channel,REJ
Model size555
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.28e-09
EggNOG OGsKOG3599@1|root,KOG3599@2759|Eukaryota
Descriptiondetection of mechanical stimulus
Cds size555
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.3518596-CDS-P-wetherbeei_contig6346:1442..14811683186906.3518596-CDS-P-wetherbeei_contig6346:1442..1481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6346 1443..1481 +
1683186906.3621643-CDS-P-wetherbeei_contig6346:1692..18241683186906.3621643-CDS-P-wetherbeei_contig6346:1692..1824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6346 1693..1824 +
1683186906.3702471-CDS-P-wetherbeei_contig6346:2046..21961683186906.3702471-CDS-P-wetherbeei_contig6346:2046..2196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6346 2047..2196 +
1683186906.3793907-CDS-P-wetherbeei_contig6346:2545..26611683186906.3793907-CDS-P-wetherbeei_contig6346:2545..2661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6346 2546..2661 +
1683186906.3939302-CDS-P-wetherbeei_contig6346:2862..29801683186906.3939302-CDS-P-wetherbeei_contig6346:2862..2980Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6346 2863..2980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6346.2.1prot_P-wetherbeei_contig6346.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6346 1443..2980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6346.2.1

>prot_P-wetherbeei_contig6346.2.1 ID=prot_P-wetherbeei_contig6346.2.1|Name=mRNA_P-wetherbeei_contig6346.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
VWEAYSTAVAYCEDILLDVSNSTGNGNRPLNYTWEEEAGHFGVAVAVAND
SNNGTLQVDAGSFQSGTWSFTVMLTNWLGESTTATVAILWTRYSVPSIAI
DGGTSQTTRRGSALRLYSRATVCGTEPSYLAYTWTETLHGLSFTSMSTNP
RYLTLAPFTLTAATNYSFGVTTSYDVAAAALAGTS
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mRNA from alignment at P-wetherbeei_contig6346:1443..2980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6346.2.1 ID=mRNA_P-wetherbeei_contig6346.2.1|Name=mRNA_P-wetherbeei_contig6346.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1538bp|location=Sequence derived from alignment at P-wetherbeei_contig6346:1443..2980+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTGGGAAGCGTACTCGACTGCTGTTGCCTACTGCGAGGTGGGCGGCAT
TAAGCGTTGAGAGGCAGGAGCATTCAAGTTTGCGGTACTGTAACCTTTGC
AAAGAAGAACTTTCTAGAATTCTGCAGAGGCACAAGCTACTGCTTGTGAT
AAGAAATTGGCCCGGTTGCTGTTCACGCGTCGTTTGTGTAGCACCAAACT
TGAACGACTAATCCTTGCTGGCTGGCAAATGCACGGCGGGCGACTGACAG
GACATATTGCTGGACGTCAGCAACTCCACGGGCAACGGGAATCGCCCTCT
GAACTACACGTGGGAGGAAGAAGCGGGCCATTTCGGCGTAGCAGTGGCCG
TGGCAAACGACTCAAACAACGGGACGCTGCAGGTATGTGCATTCTCAATT
ATGTCCCTCTGTTCTGGTGCCTACCTTAAGGTACGCTGAACGATAGTGCT
AGAGGGAACGGTTTGTCTATCGAGCGCGGCTGTGTGCAGAACTTGGGGAG
AAGCAGGATGAGACTTCACCGGAAGCTTCCTTTCCTGCCGCTCTCCCGCT
CCCTGCCTTCAATGCTCACGCAGCCTCCTCTGTTCATGCCGCTTTCTATG
CCAGGTGGACGCTGGAAGCTTCCAGAGCGGCACGTGGTCCTTCACGGTGA
TGCTCACCAACTGGCTAGGCGAATCGACCACAGCAACTGTCGCTATCCTG
TGGACGCGGTACAGTGTGCCGTCAATTGCCATCGACGGGGGAACGAGCCA
AACGGTGAGCACGGCAAGATGCTCTTTCCGTCGTCGCTCGTCGTGAGAGT
CCGTCGTCGCTCGTCGTGAGAGCGTCTCTTCTTGAGGCGCATGCCGATTG
CCGGCACTTGTTGCTGACGCTTCCTGTTCAAAGCGCACTATTTCCTCCGT
CTGCTAGCGCACAGCAGCGCCGGCCAAGTGCGATGGTTTCCTTCGCCGGC
ACACCGGCGTTCCTGCGACTACCCAGAGCCAGCAATATGAGTCAGGAGCG
CAGCGCTGGCGGCGGCCCCTTCGAGCGTAATACTCACGGCCATTGCCTGA
CTGACTCTTGGCTCACTTCAGTCCTGCGTTCGGTGGGCCCTTCTCCGCTG
CAGACCCGCCGCGGCAGCGCGCTGCGCCTCTACTCCCGAGCGACCGTGTG
CGGCACGGAGCCGTCGTATCTTGCGTACACGTGGACGGAGACGCTTCATG
GACTCTCGTTTACGAGCATGTCAGTAGAGTTTCGGGCTTGCACCATCCTT
TCGGCATCTTCCCTTTCATCAGCGTCCATTTGCGCAGCGTCAGAAGATAT
TGGCCAGACAGACACTGTGTTGCTGACTTCCTGCGCCCCTGTTATCTTTG
GGTTCTCTGAGACCATTCATCCCACTCAACGGCGCTCGTTCTCCAATCTT
CCTGCGAAAATCAAAACCAGGTCGACAAACCCTCGCTATCTCACCCTGGC
TCCTTTCACCCTCACCGCTGCGACTAACTATTCCTTCGGGGTTACCACCA
GCTACGATGTCGCTGCCGCCGCGCTTGCAGGCACCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6346:1443..2980+

>mRNA_P-wetherbeei_contig6346.2.1 ID=mRNA_P-wetherbeei_contig6346.2.1|Name=mRNA_P-wetherbeei_contig6346.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig6346:1443..2980+ (Phaeothamnion wetherbeei SAG_119_79)
GTTTGGGAAGCGTACTCGACTGCTGTTGCCTACTGCGAGGACATATTGCT
GGACGTCAGCAACTCCACGGGCAACGGGAATCGCCCTCTGAACTACACGT
GGGAGGAAGAAGCGGGCCATTTCGGCGTAGCAGTGGCCGTGGCAAACGAC
TCAAACAACGGGACGCTGCAGGTGGACGCTGGAAGCTTCCAGAGCGGCAC
GTGGTCCTTCACGGTGATGCTCACCAACTGGCTAGGCGAATCGACCACAG
CAACTGTCGCTATCCTGTGGACGCGGTACAGTGTGCCGTCAATTGCCATC
GACGGGGGAACGAGCCAAACGACCCGCCGCGGCAGCGCGCTGCGCCTCTA
CTCCCGAGCGACCGTGTGCGGCACGGAGCCGTCGTATCTTGCGTACACGT
GGACGGAGACGCTTCATGGACTCTCGTTTACGAGCATGTCGACAAACCCT
CGCTATCTCACCCTGGCTCCTTTCACCCTCACCGCTGCGACTAACTATTC
CTTCGGGGTTACCACCAGCTACGATGTCGCTGCCGCCGCGCTTGCAGGCA
CCAGC
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