mRNA_P-wetherbeei_contig6344.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6344.1.1
Unique NamemRNA_P-wetherbeei_contig6344.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: D7G6D9_ECTSI (Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6D9_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.140e-23
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 QATSVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            ++ S+VEICG Y +KCGYC+   KTSVSYG+ AK LTCADYQ LIDRGWRRSG F+YKP+M+E
Sbjct:    2 ESRSLVEICGTYRTKCGYCKPDTKTSVSYGLLAKRLTCADYQELIDRGWRRSGTFVYKPVMHE 64
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: A0A4P1QV19_LUPAN (Arginyl-tRNA--protein transferase n=3 Tax=Lupinus TaxID=3869 RepID=A0A4P1QV19_LUPAN)

HSP 1 Score: 85.5 bits (210), Expect = 5.880e-18
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            SVV  CG+  S CGYCR P +TS+S+G+ A+ LT  DYQAL+DRGWRRSG FLYKP M +
Sbjct:   15 SVVVDCGRRRSSCGYCRSPHRTSISHGLWARSLTVGDYQALLDRGWRRSGCFLYKPEMEK 74
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: W9R657_9ROSA (Arginyltransferase n=2 Tax=Morus notabilis TaxID=981085 RepID=W9R657_9ROSA)

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-17
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            S+V  CG+  S CGYCR PG+TS+S+G+ A+ LT  DYQ L+DRGWRRSG FLYKP M +
Sbjct:   41 SLVVDCGRNRSSCGYCRSPGRTSISHGLWARSLTVNDYQDLLDRGWRRSGSFLYKPEMEK 100
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: A0A1J3CWP3_NOCCA (Arginyl-tRNA--protein transferase 1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CWP3_NOCCA)

HSP 1 Score: 78.6 bits (192), Expect = 3.620e-17
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            S+V  CG+  + CGYC+ P  +S+S+G+  + LT  DYQAL+DRGWRRSG FLYKP M++
Sbjct:   24 SIVADCGRNTNTCGYCKSPTSSSISHGLWTESLTVNDYQALLDRGWRRSGCFLYKPEMDK 83
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: A0A1J3GKQ3_NOCCA (Arginyl-tRNA--protein transferase 1 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3GKQ3_NOCCA)

HSP 1 Score: 77.8 bits (190), Expect = 3.660e-17
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            S+V  CG+  S CGYC+ P  +S+S G+  + LT  DYQAL+DRGWRRSG FLYKP M++
Sbjct:   23 SIVADCGRNTSTCGYCKSPTSSSISDGLWTESLTVNDYQALLDRGWRRSGCFLYKPEMDK 82
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: UPI0010A3A5E0 (LOW QUALITY PROTEIN: arginyl-tRNA--protein transferase 2-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3A5E0)

HSP 1 Score: 83.2 bits (204), Expect = 3.820e-17
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            SVV  CG+  S CGYC+ PG+TS+S+G+ A+ LT  DYQ L+DRGWRRSG FLYKP M  
Sbjct:   19 SVVIDCGRRRSSCGYCKSPGRTSISHGLWAQSLTVNDYQDLLDRGWRRSGCFLYKPEMER 78
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: A0A565B6I6_9BRAS (ATE_N domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B6I6_9BRAS)

HSP 1 Score: 79.0 bits (193), Expect = 4.140e-17
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            S+V  CG+  S CGYC+ P  +S+S+G+  + LT  DYQAL+DRGWRRSG F+YKP M++
Sbjct:   23 SIVADCGRNISTCGYCKSPSASSISHGLWTESLTVNDYQALLDRGWRRSGCFIYKPEMDK 82
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: A0A834WSQ9_9FABA (Arginyl-tRNA--protein transferase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WSQ9_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 7.130e-17
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            S V  CG+  S CGYCR PG+TS+S+G+ A  LT  DYQ L+DRGWRRSG FLYKP M  
Sbjct:   20 SAVVDCGRRRSSCGYCRSPGRTSISHGLWAHSLTVNDYQDLLDRGWRRSGCFLYKPEMER 79
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BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: A0A8K0DSS7_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DSS7_9ROSA)

HSP 1 Score: 82.0 bits (201), Expect = 9.740e-17
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIM 183
            S V  CGK  S CGYC+ PG+TS+S+G+ A  LT  DYQ L+DRGWRRSG FLYKP M
Sbjct:   30 SKVHDCGKNRSSCGYCKSPGRTSISHGLWAHSLTVNDYQDLLDRGWRRSGSFLYKPEM 87
[Close]
BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Match: G7JB71_MEDTR (Arginyl-tRNA--protein transferase n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7JB71_MEDTR)

HSP 1 Score: 81.6 bits (200), Expect = 1.330e-16
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   10 SVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWRRSGMFLYKPIMNE 189
            SVV  CGK  S CGYCR P   S+S+G+ A  LT  DYQAL+DRGWRRSG FLYKP M +
Sbjct:   20 SVVADCGKRRSSCGYCRSPRHNSISHGMVAYSLTVYDYQALLDRGWRRSGSFLYKPEMEK 79
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6344.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D9_ECTSI3.140e-2369.84Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A4P1QV19_LUPAN5.880e-1863.33Arginyl-tRNA--protein transferase n=3 Tax=Lupinus ... [more]
W9R657_9ROSA1.500e-1761.67Arginyltransferase n=2 Tax=Morus notabilis TaxID=9... [more]
A0A1J3CWP3_NOCCA3.620e-1755.00Arginyl-tRNA--protein transferase 1 (Fragment) n=1... [more]
A0A1J3GKQ3_NOCCA3.660e-1756.67Arginyl-tRNA--protein transferase 1 (Fragment) n=1... [more]
UPI0010A3A5E03.820e-1761.67LOW QUALITY PROTEIN: arginyl-tRNA--protein transfe... [more]
A0A565B6I6_9BRAS4.140e-1755.00ATE_N domain-containing protein n=1 Tax=Arabis nem... [more]
A0A834WSQ9_9FABA7.130e-1761.67Arginyl-tRNA--protein transferase n=1 Tax=Senna to... [more]
A0A8K0DSS7_9ROSA9.740e-1763.79Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
G7JB71_MEDTR1.330e-1663.33Arginyl-tRNA--protein transferase n=1 Tax=Medicago... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6344contigP-wetherbeei_contig6344:107..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6D9
Preferred nameate-1
PFAMsATE_C,ATE_N
Model size189
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00064
KEGG koko:K00685
KEGG ReactionR03862
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
Exons2
Evalue5.15e-24
EggNOG OGsCOG2935@1|root,KOG1193@2759|Eukaryota
EC2.3.2.8
Descriptionarginyltransferase activity
Cds size189
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.24734-CDS-P-wetherbeei_contig6344:106..2461683186906.24734-CDS-P-wetherbeei_contig6344:106..246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6344 107..246 -
1683186906.2663598-CDS-P-wetherbeei_contig6344:536..5851683186906.2663598-CDS-P-wetherbeei_contig6344:536..585Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6344 537..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6344.1.1prot_P-wetherbeei_contig6344.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6344 107..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6344.1.1

>prot_P-wetherbeei_contig6344.1.1 ID=prot_P-wetherbeei_contig6344.1.1|Name=mRNA_P-wetherbeei_contig6344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
QATSVVEICGKYASKCGYCRRPGKTSVSYGINAKCLTCADYQALIDRGWR
RSGMFLYKPIMNE
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mRNA from alignment at P-wetherbeei_contig6344:107..585-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6344.1.1 ID=mRNA_P-wetherbeei_contig6344.1.1|Name=mRNA_P-wetherbeei_contig6344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=479bp|location=Sequence derived from alignment at P-wetherbeei_contig6344:107..585- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAACATCCGTCGTGGAGATTTGCGGCAAATACGCCTCAAAATGCGG
TGCGTGGACCTTGACCTTTGTTTATTTGTTGGAAACCGTACTTCTTCTCT
CTTCTCTCAGTGCGCTTTGGTTAAATGCGACGACTGGATCGGCTCCGGCT
TCGACTTCTATCCCTTCCTGGTTGACGACATAAGCATCAAGTGATTGGAG
ATGCCGATATGACATTCTTGATTCCGTTTGACGATGGTTTATTTTTTGCT
TCAAAAAGACGACCTGGAAGGTTCCATCAGCTGCGGGCGAATCAAATCCG
TTAAACAAATTGTCATTTGCAAAAGTTTTGCCGTGGCAGGATACTGCCGA
CGGCCCGGAAAGACGAGTGTCTCTTACGGCATAAACGCCAAGTGCCTGAC
TTGCGCGGACTACCAAGCTCTCATCGACCGCGGCTGGCGGCGCTCGGGCA
TGTTCCTTTACAAGCCCATCATGAACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6344:107..585-

>mRNA_P-wetherbeei_contig6344.1.1 ID=mRNA_P-wetherbeei_contig6344.1.1|Name=mRNA_P-wetherbeei_contig6344.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig6344:107..585- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAACATCCGTCGTGGAGATTTGCGGCAAATACGCCTCAAAATGCGG
ATACTGCCGACGGCCCGGAAAGACGAGTGTCTCTTACGGCATAAACGCCA
AGTGCCTGACTTGCGCGGACTACCAAGCTCTCATCGACCGCGGCTGGCGG
CGCTCGGGCATGTTCCTTTACAAGCCCATCATGAACGAG
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