mRNA_P-wetherbeei_contig6343.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6343.1.1
Unique NamemRNA_P-wetherbeei_contig6343.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A836CG36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG36_9STRA)

HSP 1 Score: 212 bits (539), Expect = 5.000e-64
Identity = 111/209 (53.11%), Postives = 133/209 (63.64%), Query Frame = 1
Query:  142 PTRHSFTYNIFYCFIDLDELRRLFPARLWPLASRRRW-ALVRWDGGDHLKDRPEVAGG---SMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIV---SNTPWMEMHCYVLAPGSPGV-----EIAAKPLPETHRLQCHRRQATETTAAA--------------FRKDFHVSPFMGMDYTYDWGFSVP 690
            P+ HSFTY IFY F+DLDEL  +FP  LWPLA+R    AL R+D  DHLKD+P+ AG    S+++RVR  V   +GERP GPVRLLTHL+YLGYCFNPVSFYYCY+A G+R+QA+V   SNTPW+EMHCY LAPG  GV     E  +    +T         A  T A                F K FHVSPFM M++TYDW F+ P
Sbjct:    4 PSEHSFTYPIFYAFLDLDELPLVFPWYLWPLATRFNIPALARFDAADHLKDQPQQAGDTERSLADRVRDFVGARSGERPEGPVRLLTHLTYLGYCFNPVSFYYCYDADGERLQAVVGEVSNTPWLEMHCYALAPGVEGVHVTTGETVSSSSEDTAHTSASNTAANSTVAEGQDAAGGAADTVRYRFAKAFHVSPFMDMEHTYDWSFTAP 212          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: D8LIW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIW5_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.270e-61
Identity = 125/302 (41.39%), Postives = 159/302 (52.65%), Query Frame = 1
Query:   28 LLLLLSLLCLAGVSDLLQ-------GSGEVKSAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPARLWPLASRRRWALVRWDGGDHLKDR-------------------------PEVAGG-------------------------------SMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIV---SNTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVP---PGERLVVRTSML 726
            LLLL SL+ +A VSD +             +SA+Y+GRV H RF PT H F+Y IFYC +DLDEL   FP  +WP+ S R  AL R+   DHLK R                         P  A G                               S+++RVR IV++ATG RP G V+LLTHL+YLGYCFNPVSFYYC +   + ++ +V   SNTPW EMHCYVL P + GV++ AK     +     +R   E T   F KDFHVSPFM M +TYDW F+ P   PG  L+ +T++L
Sbjct:   20 LLLLSSLVAVALVSDAVARRXXXXXXXXXXRSAVYAGRVWHARFKPTAHHFSYPIFYCLVDLDELDIAFPWYIWPVGSARLPALSRFRSADHLKGRGAATPVFAAXXXXXXXXXXXAAAGDPVDAAGDGVGRNEGGRGASGPSRARATAATSSPPLSSSLADRVRDIVEEATGARPTGRVQLLTHLAYLGYCFNPVSFYYCLDKTEREIETVVAEVSNTPWGEMHCYVLNPKTKGVQVIAKDKSNDNDNNTSKRGTKEITRYRFEKDFHVSPFMSMKHTYDWKFTAPDASPGSGLMAQTTLL 321          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: UPI0008346118 (DUF1365 domain-containing protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008346118)

HSP 1 Score: 177 bits (450), Expect = 6.870e-52
Identity = 101/211 (47.87%), Postives = 123/211 (58.29%), Query Frame = 1
Query:  100 SAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHL--KDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIVS---NTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVVR 714
            SAIYSG V H RF+P  H F+Y +F  +IDL EL R+F  R LW   S  R  +VR+D  DHL   DRP      + E VR +VQ+ TG RP GP+RLLTH  Y G+CFNPVSFYYC++A  + ++ IV+   NTPW E HCYVL     G           HR +             FRK FHVSPF+ MDY YDW F+ P G+RL V 
Sbjct:    4 SAIYSGTVRHRRFAPRPHGFSYRVFMLYIDLGELDRVFRGRWLW---SVERPNIVRFDRRDHLGPHDRP------LDENVRDLVQERTGARPSGPIRLLTHPRYFGFCFNPVSFYYCFDAADRELETIVAEVHNTPWGERHCYVLPVDGDGTH---------HRFR-------------FRKAFHVSPFLDMDYDYDWRFTTP-GDRLTVH 182          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A6L3EL92_9PROT (DUF1365 domain-containing protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L3EL92_9PROT)

HSP 1 Score: 168 bits (425), Expect = 5.320e-49
Identity = 94/204 (46.08%), Postives = 117/204 (57.35%), Query Frame = 1
Query:   91 EVKSAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHLKDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIV---SNTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVP 690
            ++KS IY G+V H RF+P RH F+Y +F  ++DL EL R+F  R LW   S  R AL R+   D+L D     G ++   VR +V+     RP GP+RLLTHL Y GYCFNP SFYYC++AGG+ V+AIV   +NTPW E H YVL     G  +  + L                   A RK FHVSPFM MD  YDW FS P
Sbjct:    2 KLKSCIYVGQVRHRRFAPARHGFSYRLFMMYLDLSELDRVFDGRWLW---SATRPALARFRRSDYLGD----PGVNLDTAVRDLVEARGVPRPTGPIRLLTHLRYFGYCFNPASFYYCFDAGGRFVEAIVVEVTNTPWAERHAYVLTAEKNGDPVTCRNL-------------------ALRKGFHVSPFMPMDIDYDWRFSDP 179          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A0S8AAD9_9GAMM (Chromosome partitioning protein ParA n=1 Tax=Gammaproteobacteria bacterium SG8_15 TaxID=1703403 RepID=A0A0S8AAD9_9GAMM)

HSP 1 Score: 171 bits (432), Expect = 1.050e-48
Identity = 100/226 (44.25%), Postives = 134/226 (59.29%), Query Frame = 1
Query:   49 LCLAGVSDLLQGSGEVKSAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHLKDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIVS---NTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVVR 714
            L L+ + ++L+G   +KS IY+G+V H RF+P  H F Y +F  ++DL EL  LF    LW   S +++AL  +   DH   +P V    + E +R +VQ+ TG RPRGP+RLLTH  Y GYCFNPVSFYYC++   Q+V+ IV+   NTPW E HCYVL+          + +  +H    H+R         F KDFHVSPFM +D  YDW FS  PGE+L V 
Sbjct:    6 LALSMLLNILKGPKLMKSCIYTGQVRHRRFAPKAHEFRYRLFMMYVDLAELPFLFDKHWLW---SSKKFALAWFRREDHY-GKPGVR---LEESIRQLVQKETGRRPRGPIRLLTHFRYFGYCFNPVSFYYCFDDADQKVETIVAEVNNTPWGERHCYVLS--------EQRNVGNSH----HKR-------FQFGKDFHVSPFMDIDIDYDWRFS-QPGEQLNVH 204          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A7S2U4A5_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U4A5_9EUKA)

HSP 1 Score: 171 bits (433), Expect = 1.700e-48
Identity = 101/224 (45.09%), Postives = 130/224 (58.04%), Query Frame = 1
Query:   67 SDLLQGSGEVKSAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPARLWPLASRR-RWALVRWDGGDHLKDRPEVAG-GSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQR--VQAIVSNTPWMEMHCYVLAPGSPGVEIAAKPL-PETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVVRTSM 723
            + ++ GS    + +Y GRV H RF P  H F Y +F   +DLD + +      WPL S   RWA+  +   DHLKD P+  G  S+++RVR++V+  TG+ P G ++LLT+LSY GYCFNPVSFYYC N+ G    V A VSNTPW EMH YVL P S  V+   +P  P T R              AF+K FHVSPFM M++ YD+ F  P    L V TSM
Sbjct:    1 AGVIMGSLTNGTLLYDGRVWHKRFKPCVHGFNYALFMFLLDLDAVHQALRG-FWPLCSTSSRWAVAYFSEDDHLKDIPKNKGLQSLADRVRALVRSRTGKSPPGSIKLLTNLSYFGYCFNPVSFYYCLNSDGTLYCVVAEVSNTPWGEMHTYVLHPDSKDVKSMREPSQPYTKRY-------------AFKKTFHVSPFMDMEHNYDFSFHSPQ-RILQVNTSM 209          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A7Y3E507_9GAMM (DUF1365 domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y3E507_9GAMM)

HSP 1 Score: 168 bits (425), Expect = 5.250e-48
Identity = 100/211 (47.39%), Postives = 120/211 (56.87%), Query Frame = 1
Query:   94 VKSAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHLKDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIVS---NTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVVR 714
            +KSAIYSG+V H R +P  H+FTY +F  ++DL E+  LF  R LW   S RR AL R+   DHL D P V   S+   VR +V+  TG  P GP+RLLT LSY GY FNPVSFYYCYNA    ++ IV+   NTPW E HCYVL            P       Q H+R   E       K+ HVSPFM MD  YDW F+ PP + L V 
Sbjct:    1 MKSAIYSGQVRHRRTAPVEHAFTYRLFMMYLDLAEIPELFRNRWLW---SARRPALARFRRKDHLGD-PAV---SLDRAVRELVRGKTGTAPDGPIRLLTQLSYFGYVFNPVSFYYCYNADDTELETIVAEVNNTPWGEQHCYVL------------PQSMNRGSQAHKRYFPE-------KEMHVSPFMQMDVDYDWRFN-PPNDALTVH 184          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A7Y1W1F8_9GAMM (DUF1365 domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y1W1F8_9GAMM)

HSP 1 Score: 166 bits (421), Expect = 2.090e-47
Identity = 98/211 (46.45%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   94 VKSAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHLKDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIVS---NTPWMEMHCYVL-APGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVV 711
            + SAI+ G+V H R  P  H+F+Y +F  ++DL E+  +F  R LW   S RR+AL R+   DHL D P V    + + VR +V++  G RP+GP+RLLTHLSY GYCFNPVSFYYC++A GQ+V+A+V+   NTPW E HCYVL   G PG     +  PE                    K  HVSPFM MD  Y W FS  PGE L V
Sbjct:    1 MNSAIFEGQVRHRRMRPKAHAFSYRMFMMYLDLAEIDTVFRGRWLW---STRRFALARFRREDHLGD-PAVP---LVDAVRDLVEREAGWRPQGPIRLLTHLSYFGYCFNPVSFYYCFDARGQQVEAVVAEVNNTPWGEQHCYVLDGSGKPGGAAQQRFSPE--------------------KQMHVSPFMPMDIRYGWHFS-RPGEILGV 183          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A0W0UB33_9GAMM (Protein of uncharacterized function (DUF1365) n=3 Tax=Legionella TaxID=445 RepID=A0A0W0UB33_9GAMM)

HSP 1 Score: 166 bits (420), Expect = 2.710e-47
Identity = 93/209 (44.50%), Postives = 116/209 (55.50%), Query Frame = 1
Query:  100 SAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHLKDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIVS---NTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVVR 714
            SAIY G V H R+ P RH F+YN+F  F+DLDEL  LF +   W +    R+ + ++   DHL D        + + V  +V++ TG R  GPVRLLTHL Y GYCFNPVSFYYCY+A G+R++AIV+   NTPW E H YVL                +  L  H  Q        F KDFHVSP M MD  YDW  S P  E++ V 
Sbjct:    8 SAIYKGSVIHRRYGPVRHQFSYNVFMVFLDLDELSTLFDSYWFWSVG---RYNIAQFKRSDHLGD----PANDLKQEVYKLVEEKTGHRLEGPVRLLTHLRYWGYCFNPVSFYYCYDATGKRLEAIVAEVNNTPWNEQHTYVLT--------------VSQNLASHEYQHF-----VFDKDFHVSPLMSMDMIYDWRLSAP-NEKIFVH 189          
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Match: A0A5Q4EYT4_9GAMM (DUF1365 domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A5Q4EYT4_9GAMM)

HSP 1 Score: 166 bits (419), Expect = 3.840e-47
Identity = 96/206 (46.60%), Postives = 117/206 (56.80%), Query Frame = 1
Query:  100 SAIYSGRVSHTRFSPTRHSFTYNIFYCFIDLDELRRLFPAR-LWPLASRRRWALVRWDGGDHLKDRPEVAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNAGGQRVQAIV---SNTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQATETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERL 705
            SAIY GR+ H R  P  H+F + +F  ++DLDEL  +F  R LW   S RR A       DHL D     G  ++E VR +V+   G RP GP+RLLTHL Y G+CFNPVSFYYC++  G R+ A+V   +NTPW E +CYVLA  SP   IA            H R         F KDFHVSPF+ MD  YDW F+ PPG  L
Sbjct:    3 SAIYRGRLEHHRHLPVAHAFRHQLFMVYLDLDELDEVFQGRWLW---STRRPAPAWLRRADHLGD----PGRPLAECVRDLVEARLGRRPAGPIRLLTHLRYFGHCFNPVSFYYCFDESGSRIDAMVLEVTNTPWHERYCYVLANASPEEHIA------------HYR---------FGKDFHVSPFLPMDMAYDWRFA-PPGGML 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6343.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG36_9STRA5.000e-6453.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LIW5_ECTSI1.270e-6141.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00083461186.870e-5247.87DUF1365 domain-containing protein n=1 Tax=Halofilu... [more]
A0A6L3EL92_9PROT5.320e-4946.08DUF1365 domain-containing protein (Fragment) n=1 T... [more]
A0A0S8AAD9_9GAMM1.050e-4844.25Chromosome partitioning protein ParA n=1 Tax=Gamma... [more]
A0A7S2U4A5_9EUKA1.700e-4845.09Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7Y3E507_9GAMM5.250e-4847.39DUF1365 domain-containing protein n=1 Tax=Xanthomo... [more]
A0A7Y1W1F8_9GAMM2.090e-4746.45DUF1365 domain-containing protein n=1 Tax=Xanthomo... [more]
A0A0W0UB33_9GAMM2.710e-4744.50Protein of uncharacterized function (DUF1365) n=3 ... [more]
A0A5Q4EYT4_9GAMM3.840e-4746.60DUF1365 domain-containing protein n=1 Tax=Gammapro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6343contigP-wetherbeei_contig6343:1940..3437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LIW5
PFAMsDUF1365
Model size726
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue2.08e-62
EggNOG OGsCOG3496@1|root,2QVK6@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1365
Ec32 orthologEc-20_001810.1
DescriptionProtein of unknown function (DUF1365)
Cds size726
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.1641872-CDS-P-wetherbeei_contig6343:1939..22961683186906.1641872-CDS-P-wetherbeei_contig6343:1939..2296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6343 1940..2296 +
1683186906.183416-CDS-P-wetherbeei_contig6343:2392..25091683186906.183416-CDS-P-wetherbeei_contig6343:2392..2509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6343 2393..2509 +
1683186906.1944518-CDS-P-wetherbeei_contig6343:2780..28491683186906.1944518-CDS-P-wetherbeei_contig6343:2780..2849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6343 2781..2849 +
1683186906.205073-CDS-P-wetherbeei_contig6343:2961..30351683186906.205073-CDS-P-wetherbeei_contig6343:2961..3035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6343 2962..3035 +
1683186906.216326-CDS-P-wetherbeei_contig6343:3328..34371683186906.216326-CDS-P-wetherbeei_contig6343:3328..3437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6343 3329..3437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6343.1.1prot_P-wetherbeei_contig6343.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6343 1940..3437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6343.1.1

>prot_P-wetherbeei_contig6343.1.1 ID=prot_P-wetherbeei_contig6343.1.1|Name=mRNA_P-wetherbeei_contig6343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=242bp
MIAWLLGAVLLLLLSLLCLAGVSDLLQGSGEVKSAIYSGRVSHTRFSPTR
HSFTYNIFYCFIDLDELRRLFPARLWPLASRRRWALVRWDGGDHLKDRPE
VAGGSMSERVRSIVQQATGERPRGPVRLLTHLSYLGYCFNPVSFYYCYNA
GGQRVQAIVSNTPWMEMHCYVLAPGSPGVEIAAKPLPETHRLQCHRRQAT
ETTAAAFRKDFHVSPFMGMDYTYDWGFSVPPGERLVVRTSML
back to top

mRNA from alignment at P-wetherbeei_contig6343:1940..3437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6343.1.1 ID=mRNA_P-wetherbeei_contig6343.1.1|Name=mRNA_P-wetherbeei_contig6343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1498bp|location=Sequence derived from alignment at P-wetherbeei_contig6343:1940..3437+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGCCTGGCTGCTTGGCGCCGTTCTCCTCCTTCTCCTGTCGTTGCT ATGCCTGGCAGGCGTGAGCGACTTGCTCCAGGGATCTGGCGAGGTCAAGA GCGCGATCTATTCAGGCCGAGTGTCGCACACTCGCTTCTCGCCAACGCGG CACAGCTTTACGTACAACATCTTCTACTGCTTTATCGACCTAGATGAGCT CCGGAGGCTGTTCCCAGCTCGGCTTTGGCCACTGGCCTCCCGACGCCGCT GGGCCTTGGTGCGCTGGGACGGAGGAGATCATCTCAAGGACCGGCCAGAG GTGGCCGGAGGAAGCATGTCCGAGAGGGTCCGATCCATCGTGCAGCAAGC TACAGGAGTAAGTCCTGACTTTTCGGTTTGCAACTAGAATGATGTCTCTT TCCTCGATCTCCTCTAACCACGCGTGTCTCGATATGCTTGCCGGCTGCCG CAGGAGAGGCCAAGAGGGCCGGTGCGCCTGCTCACGCATCTGAGCTACCT GGGCTACTGCTTCAATCCGGTTTCCTTCTATTACTGCTACAACGCTGGAG GGCAGCGCGTCCAGGCCATTGTCGCCGAGGCAAGTCGGCTTTAACACCTG TCAGCCTTTCCGACCGCAGAAATAGCTGGCGGTCTTGACATCTGTTTTTT GCGATAAAGAGATGTTGGAGGAAAACCTGTCTCGGCCGAGCCAGCTAGGC TCCATCCCCTCGAATTAATGCACGCATCACGCAATGGGCTACAAGCTTGC AACGCTTTTTGCCGAGGGAATCCGAAATGGGAGGGATGCAATGCCATGTT TTTGAAAATTCTTTAATCTCAAACTATCCTTCGTTTTGCAGGTGAGCAAT ACGCCGTGGATGGAAATGCACTGCTATGTGCTGGCGCCCGGGTCGCCGGG CGTGGAGATCGTGGCCAACGGGACGGCGGGGCGCGGCAATGCTGCCGGGG CCCCCACGGGAGCTGTCGGAGGAGGCAGCGCCGCCGCCGCCGCCGGCGCA GCGGTCGCCGGAGCCAGCAGAGGCGGCGAAGCCGCTGCCGGAGACGCATC GACTGCAGTGCCACCGGCGTCAGGCGACGGAGACGACAGCAGCGGCGTGG AGACGCTGCGCTATAGGTGATAATAATTCTTTTTTGTGCACCGAGCTGGT GCGAAATAACTGCATTATCATAAGATGTGTGCCTTTGGCCCTACGATTAG AGGGGGCTTACGTGCAATTACAAAGCAGATCACGTCGGAAACAGATGACC CATATCTGTTTCCGATCCGTATACGCAACAATACTGCGTGCCGTCGTTTT AATGAGCTGGGTGGAACAACAAACCGCGGGCCGAACAATAGACCTCTCCT CTGATGTTCTCCCCTTACAAACAATCCGACCGGCGGCAGGTTCCGCAAGG ACTTCCACGTGTCTCCTTTCATGGGCATGGACTACACGTACGACTGGGGC TTCTCGGTGCCGCCCGGCGAGCGGCTCGTGGTGCGGACATCTATGCTA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6343:1940..3437+

>mRNA_P-wetherbeei_contig6343.1.1 ID=mRNA_P-wetherbeei_contig6343.1.1|Name=mRNA_P-wetherbeei_contig6343.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig6343:1940..3437+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGCCTGGCTGCTTGGCGCCGTTCTCCTCCTTCTCCTGTCGTTGCT
ATGCCTGGCAGGCGTGAGCGACTTGCTCCAGGGATCTGGCGAGGTCAAGA
GCGCGATCTATTCAGGCCGAGTGTCGCACACTCGCTTCTCGCCAACGCGG
CACAGCTTTACGTACAACATCTTCTACTGCTTTATCGACCTAGATGAGCT
CCGGAGGCTGTTCCCAGCTCGGCTTTGGCCACTGGCCTCCCGACGCCGCT
GGGCCTTGGTGCGCTGGGACGGAGGAGATCATCTCAAGGACCGGCCAGAG
GTGGCCGGAGGAAGCATGTCCGAGAGGGTCCGATCCATCGTGCAGCAAGC
TACAGGAGAGAGGCCAAGAGGGCCGGTGCGCCTGCTCACGCATCTGAGCT
ACCTGGGCTACTGCTTCAATCCGGTTTCCTTCTATTACTGCTACAACGCT
GGAGGGCAGCGCGTCCAGGCCATTGTGAGCAATACGCCGTGGATGGAAAT
GCACTGCTATGTGCTGGCGCCCGGGTCGCCGGGCGTGGAGATCGCGGCGA
AGCCGCTGCCGGAGACGCATCGACTGCAGTGCCACCGGCGTCAGGCGACG
GAGACGACAGCAGCGGCGTTCCGCAAGGACTTCCACGTGTCTCCTTTCAT
GGGCATGGACTACACGTACGACTGGGGCTTCTCGGTGCCGCCCGGCGAGC
GGCTCGTGGTGCGGACATCTATGCTA
back to top