mRNA_P-wetherbeei_contig6340.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6340.1.1
Unique NamemRNA_P-wetherbeei_contig6340.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6340.1.1 vs. uniprot
Match: A0A835YJG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.210e-8
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:  384 FVLLAFDVMIDVGGRPFVLEVNHNPAVP------GPQACTPAFYSHLVGLASDIV---ALVIG 545
            F LLAFDVM+D   RP++LEVNHNPAVP      G   C  AF+ HLVGL  DI+   AL +G
Sbjct:  579 FALLAFDVMLDSARRPWLLEVNHNPAVPSREVLAGEGECGDAFWEHLVGLCQDIIEVTALEVG 641
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6340.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YJG6_9STRA1.210e-855.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6340contigP-wetherbeei_contig6340:36..704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size669
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.0567393-UTR-P-wetherbeei_contig6340:35..1271683186906.0567393-UTR-P-wetherbeei_contig6340:35..127Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6340 36..127 +
1683186906.0744503-UTR-P-wetherbeei_contig6340:646..7041683186906.0744503-UTR-P-wetherbeei_contig6340:646..704Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6340 647..704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.0659826-CDS-P-wetherbeei_contig6340:127..6461683186906.0659826-CDS-P-wetherbeei_contig6340:127..646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6340 128..646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6340.1.1prot_P-wetherbeei_contig6340.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6340 128..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6340.1.1

>prot_P-wetherbeei_contig6340.1.1 ID=prot_P-wetherbeei_contig6340.1.1|Name=mRNA_P-wetherbeei_contig6340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MAVANTTAAAMAATDSLRLTEAAFSARKQALSVVGTVSPLPLPSARLPLT
LAPEESASATENVYYGATAAAAAMVDHIKAPNGPRSGCCIDDGEWEEFVL
LAFDVMIDVGGRPFVLEVNHNPAVPGPQACTPAFYSHLVGLASDIVALVI
GRDRGETVGTWIPVDEERKDSG*
back to top

mRNA from alignment at P-wetherbeei_contig6340:36..704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6340.1.1 ID=mRNA_P-wetherbeei_contig6340.1.1|Name=mRNA_P-wetherbeei_contig6340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig6340:36..704+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCGACGGCTGTGGCGGCGGCGGCGGCGCCGGCGGCGGCAGAAGCAGCG
GCGGCGGCAGAAGCAGCGCCCATTGGGCCGGCTGTGGCGAACATGGCAGT
AGCGAACACGACAGCAGCTGCGATGGCGGCGACGGATAGCCTGAGGCTAA
CAGAGGCGGCTTTTTCGGCGCGAAAGCAGGCGCTTTCGGTCGTAGGGACA
GTGTCGCCGCTTCCGCTACCATCAGCGCGGCTTCCTCTAACGCTGGCTCC
GGAAGAATCAGCCAGTGCCACCGAGAACGTGTATTATGGCGCCACCGCCG
CCGCCGCCGCAATGGTTGACCACATAAAAGCCCCAAACGGCCCGCGCAGT
GGCTGCTGTATCGATGATGGTGAGTGGGAAGAGTTTGTGCTCTTGGCGTT
CGATGTGATGATTGATGTCGGCGGCCGGCCCTTCGTGCTGGAAGTGAACC
ACAACCCGGCGGTTCCGGGGCCGCAAGCGTGCACGCCCGCGTTCTACAGC
CATCTTGTCGGACTGGCAAGTGACATTGTTGCGCTGGTGATTGGGAGAGA
CCGTGGGGAAACGGTCGGGACGTGGATTCCTGTGGACGAGGAGAGAAAGG
ACTCTGGATGACCTGAACTGGGCACAAGAGCCTGGAGGTGAAATCACAAC
TCCGAAACTCAAAGCAAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6340:36..704+

>mRNA_P-wetherbeei_contig6340.1.1 ID=mRNA_P-wetherbeei_contig6340.1.1|Name=mRNA_P-wetherbeei_contig6340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig6340:36..704+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGTAGCGAACACGACAGCAGCTGCGATGGCGGCGACGGATAGCCT
GAGGCTAACAGAGGCGGCTTTTTCGGCGCGAAAGCAGGCGCTTTCGGTCG
TAGGGACAGTGTCGCCGCTTCCGCTACCATCAGCGCGGCTTCCTCTAACG
CTGGCTCCGGAAGAATCAGCCAGTGCCACCGAGAACGTGTATTATGGCGC
CACCGCCGCCGCCGCCGCAATGGTTGACCACATAAAAGCCCCAAACGGCC
CGCGCAGTGGCTGCTGTATCGATGATGGTGAGTGGGAAGAGTTTGTGCTC
TTGGCGTTCGATGTGATGATTGATGTCGGCGGCCGGCCCTTCGTGCTGGA
AGTGAACCACAACCCGGCGGTTCCGGGGCCGCAAGCGTGCACGCCCGCGT
TCTACAGCCATCTTGTCGGACTGGCAAGTGACATTGTTGCGCTGGTGATT
GGGAGAGACCGTGGGGAAACGGTCGGGACGTGGATTCCTGTGGACGAGGA
GAGAAAGGACTCTGGATGA
back to top