mRNA_P-wetherbeei_contig6338.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6338.2.1
Unique NamemRNA_P-wetherbeei_contig6338.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: D8LQI2_ECTSI (NAD(P)H-Nitrate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI2_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 4.890e-53
Identity = 97/174 (55.75%), Postives = 125/174 (71.84%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSPPRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNRYKFDAGGMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLPPA 609
            G  ++RPYTPVTGDEV GYV+LVIKVY P+  R+  GG+MSQ++D L+IG+++D KGP+G+I YL  G+F IKG     +   M+AGGTGITPMY+VI+ VL DP D T  SL++AN+TEEDILLRDE D LA  NP+RF++WY I       DW Y  G ++ +M   HLP A
Sbjct:  621 GEFVMRPYTPVTGDEVSGYVDLVIKVYTPND-RFPKGGKMSQMLDALDIGDTIDIKGPVGEIVYLEPGQFLIKGKPRNANKLAMLAGGTGITPMYQVIKAVLSDPADTTLCSLIYANQTEEDILLRDELDALAKANPDRFKLWYTIDRPSG--DWKYDKGFISKEMCEAHLPEA 791          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: UPI0018F53023 (LOW QUALITY PROTEIN: NADH-cytochrome b5 reductase 1 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F53023)

HSP 1 Score: 186 bits (473), Expect = 3.290e-52
Identity = 94/180 (52.22%), Postives = 129/180 (71.67%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNRYKFDAG-------GMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            G L+VRPYTPVTGDE +GYV+LVIKVY     P++ +GG+MSQ +D L+IG+ ++F+GP G +TY+G G+FDI  N+ K  A        GM+AGGTGITPM ++ R +L DPED T+ SL+FAN+TE+DI+LR++ + L +  PERF++W+ +   H    W YG G V ADM+R HLP
Sbjct:   91 GNLVVRPYTPVTGDENRGYVDLVIKVYLKGVHPKFPDGGKMSQYLDGLKIGDVVEFRGPSGLLTYVGKGKFDIHPNK-KSPAEPRTAKKLGMIAGGTGITPMLQLTRAILKDPEDTTQCSLLFANQTEKDIILREDLEELQAQYPERFKLWFTLD--HPPKGWSYGRGFVTADMIREHLP 267          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: UPI000C6DF914 (NADH-cytochrome b5 reductase 3-like isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DF914)

HSP 1 Score: 186 bits (472), Expect = 5.760e-52
Identity = 90/179 (50.28%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNR------YKFDAGGMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            G+L+VRPYTPV+ D+ KGY++LVIKVYF +  P+Y  GG+MSQ ++ +EIG+S+D +GP G++ Y G GEF I+ ++      YK    GM+AGGTGITPM +++R V  +PED+T L L+FAN+TE DILLR E + LA+ + +RF++WY +      + W Y +G VNADM+  HLP
Sbjct:   99 GQLVVRPYTPVSSDDCKGYMDLVIKVYFKNVHPKYPEGGKMSQYLNNMEIGDSIDIRGPNGNLIYNGAGEFSIRPDKKSPSSIYKVKKVGMIAGGTGITPMLQIVRQVFKEPEDQTILYLLFANQTEGDILLRSELEELAATHSDRFKLWYTVDRP--TDGWKYSSGFVNADMISQHLP 275          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: F6ZLH7_ORNAN (Cytochrome-b5 reductase n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F6ZLH7_ORNAN)

HSP 1 Score: 188 bits (477), Expect = 1.060e-51
Identity = 94/180 (52.22%), Postives = 131/180 (72.78%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNRYKFDAG-------GMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            G L+VRPYTPVTGDE +GYV+LVIKVY     P++ +GG+MSQ +D L+IG+ ++F+GP G +TY+G G+FDI  N+ K  A        GM+AGGTGITPM ++IR +L DPED T+ SL+FAN+TE+DI+LR++ + L + +PERF++W+ + +      W YG G V ADM+R HLP
Sbjct:  188 GNLVVRPYTPVTGDENRGYVDLVIKVYLRGVHPKFPDGGKMSQYLDGLKIGDVVEFRGPSGMLTYVGKGKFDIHPNK-KSPAEPRTAKKLGMIAGGTGITPMLQLIRAILKDPEDTTQCSLLFANQTEKDIILREDLEELQAQHPERFKLWFTLDQPPK--GWSYGRGFVTADMIREHLP 364          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: A0A0N5D863_THECL (NADH-cytochrome b5 reductase n=1 Tax=Thelazia callipaeda TaxID=103827 RepID=A0A0N5D863_THECL)

HSP 1 Score: 183 bits (465), Expect = 1.690e-51
Identity = 85/178 (47.75%), Postives = 126/178 (70.79%), Query Frame = 1
Query:   91 RLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGN------RYKFDAGGMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            +L+VRPYTP++ D+ KGYV+L+IKVYF +  P + +GG+M+Q ++E++IGE++DF+GP G I Y G G F +K +      R+ +   GM+AGG+GITPM ++I  +  DP D T++SL+FANK E DIL+RDE D+L +++ E+F  WY I E      W Y TG+VN +M++ HLP
Sbjct:   52 KLVVRPYTPISSDDDKGYVDLMIKVYFKNTHPNFPDGGKMTQYLEEMKIGETIDFRGPSGLIVYEGNGTFAVKSSKKDEPKRHTYKNIGMIAGGSGITPMLQIISAIFKDPNDHTKVSLIFANKDESDILMRDELDKLTAEHSEQFNAWYTIEEP--VTGWKYSTGYVNVEMIKEHLP 227          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: A0A1I7VQT7_LOALO (NADH-cytochrome b5 reductase n=1 Tax=Loa loa TaxID=7209 RepID=A0A1I7VQT7_LOALO)

HSP 1 Score: 185 bits (469), Expect = 1.830e-51
Identity = 90/181 (49.72%), Postives = 131/181 (72.38%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIK--------GNRYKFDAGGMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            G+L+VRPYTPV+ D+ KGYV+L++K+YF +  P++ +GG+M+Q ++++EIGE+++F+GP G I Y G G F +K           YK    GM+AGG+GITPM ++I  ++  PED T++SL+FANK E DILLRDE DRLA+D+P +F+VWY + +     DW Y TG VNA+M++ HLP
Sbjct:  104 GKLVVRPYTPVSSDDDKGYVDLMVKIYFSNVHPKFPDGGKMTQYLEKMEIGETINFRGPSGLIVYEGNGSFAVKLTKKAEPKSRMYKNI--GMIAGGSGITPMLQIILAIVKVPEDPTKVSLIFANKDEADILLRDELDRLAADHPTKFRVWYTVDQAKP--DWIYSTGFVNAEMIQKHLP 280          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: A0A6I8NHA4_ORNAN (Cytochrome-b5 reductase n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NHA4_ORNAN)

HSP 1 Score: 188 bits (477), Expect = 2.500e-51
Identity = 94/180 (52.22%), Postives = 131/180 (72.78%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNRYKFDAG-------GMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            G L+VRPYTPVTGDE +GYV+LVIKVY     P++ +GG+MSQ +D L+IG+ ++F+GP G +TY+G G+FDI  N+ K  A        GM+AGGTGITPM ++IR +L DPED T+ SL+FAN+TE+DI+LR++ + L + +PERF++W+ + +      W YG G V ADM+R HLP
Sbjct:  225 GNLVVRPYTPVTGDENRGYVDLVIKVYLRGVHPKFPDGGKMSQYLDGLKIGDVVEFRGPSGMLTYVGKGKFDIHPNK-KSPAEPRTAKKLGMIAGGTGITPMLQLIRAILKDPEDTTQCSLLFANQTEKDIILREDLEELQAQHPERFKLWFTLDQPPK--GWSYGRGFVTADMIREHLP 401          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: A0A6P5LS38_PHACI (NADH-cytochrome b5 reductase n=6 Tax=Metatheria TaxID=9263 RepID=A0A6P5LS38_PHACI)

HSP 1 Score: 183 bits (465), Expect = 4.970e-51
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNRYKFDAG-------GMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLP 603
            G L+VRPYTPVTGDE KGYV+LVIK+Y     P++  GG+MSQ +D L+IG+ ++F+GP G +TY G G+FDI  ++ K  A        GM+AGGTGITPM ++IR +L DPED TR  L+FAN+TE+DI+LR++ + L +  PERF++W+ + +     DW YG G V ADM+R HLP
Sbjct:   91 GNLVVRPYTPVTGDENKGYVDLVIKIYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTYNGKGKFDIHPSK-KSPAEPRVAKKLGMIAGGTGITPMLQLIRAILKDPEDPTRCFLLFANQTEKDIILREDLEELQALYPERFKLWFTLDQPPA--DWAYGRGFVTADMIREHLP 267          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: A0A4Y2DM79_ARAVE (NADH-cytochrome b5 reductase n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2DM79_ARAVE)

HSP 1 Score: 181 bits (458), Expect = 5.770e-51
Identity = 83/180 (46.11%), Postives = 130/180 (72.22%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNR------YKFDAGGMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLPP 606
            G +++RPYTPVT D+ KGY +LVIKVYF    P++ +GG+MSQ +++++IG+S+D +GP G + YLG G+F +K +       Y+ +  GM++GGTGITPMY++I+ VL DPED+ ++SL+FAN+TE+DILLR E +  A+   ++F++W+ +      + W Y +G ++ADM+  HLPP
Sbjct:   14 GNIVIRPYTPVTSDDDKGYFDLVIKVYFKGVHPKFPDGGKMSQYLNDMKIGDSIDVRGPSGKLVYLGKGKFSVKVDHKSPPQIYQVNEIGMISGGTGITPMYQLIKQVLKDPEDKLKMSLLFANQTEDDILLRKELEDTAAKRSDQFKLWFTVDRP--TDGWKYSSGFISADMITEHLPP 191          
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Match: A0A096MF27_POEFO (NADH-cytochrome b5 reductase n=14 Tax=Poeciliinae TaxID=586240 RepID=A0A096MF27_POEFO)

HSP 1 Score: 183 bits (464), Expect = 6.980e-51
Identity = 88/183 (48.09%), Postives = 125/183 (68.31%), Query Frame = 1
Query:   88 GRLIVRPYTPVTGDEVKGYVELVIKVYFPSP-PRYRNGGQMSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNR------YKFDAGGMVAGGTGITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPERFQVWYVISEVHNYNDWHYGTGHVNADMLRGHLPPARR 615
            G L+VRPYTPV+ DE +G+V+LV+K+Y+    P Y +GGQMSQ +D + IG+S+DF+GP G + Y G G F I+ N+       KF   GM+AGGTGITPM ++IR +  DP D T+ SL+FAN+TE+DILL DE   +  ++PE+ +VWY + +     DW Y +G+V  DM++ H+P A R
Sbjct:   91 GNLVVRPYTPVSSDEDQGFVDLVVKIYYKGTHPNYPDGGQMSQYLDNMAIGDSIDFRGPNGLLIYKGKGMFSIRANKKTEPVVQKFKHVGMIAGGTGITPMLQLIRRITSDPADNTKCSLIFANQTEKDILLWDELKDVQKNHPEKVKVWYTLDKPSK--DWSYSSGYVTLDMIKDHIPAASR 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6338.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQI2_ECTSI4.890e-5355.75NAD(P)H-Nitrate reductase n=2 Tax=Ectocarpus TaxID... [more]
UPI0018F530233.290e-5252.22LOW QUALITY PROTEIN: NADH-cytochrome b5 reductase ... [more]
UPI000C6DF9145.760e-5250.28NADH-cytochrome b5 reductase 3-like isoform X1 n=2... [more]
F6ZLH7_ORNAN1.060e-5152.22Cytochrome-b5 reductase n=2 Tax=Ornithorhynchus an... [more]
A0A0N5D863_THECL1.690e-5147.75NADH-cytochrome b5 reductase n=1 Tax=Thelazia call... [more]
A0A1I7VQT7_LOALO1.830e-5149.72NADH-cytochrome b5 reductase n=1 Tax=Loa loa TaxID... [more]
A0A6I8NHA4_ORNAN2.500e-5152.22Cytochrome-b5 reductase n=1 Tax=Ornithorhynchus an... [more]
A0A6P5LS38_PHACI4.970e-5152.22NADH-cytochrome b5 reductase n=6 Tax=Metatheria Ta... [more]
A0A4Y2DM79_ARAVE5.770e-5146.11NADH-cytochrome b5 reductase n=1 Tax=Araneus ventr... [more]
A0A096MF27_POEFO6.980e-5148.09NADH-cytochrome b5 reductase n=14 Tax=Poeciliinae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6338contigP-wetherbeei_contig6338:1175..2979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQI2
Preferred nameNIA1
PFAMsCyt-b5,FAD_binding_6,Mo-co_dimer,NAD_binding_1,Oxidored_molyb
Model size1294
Max annot lvl2759|Eukaryota
KEGG rclassRC00168,RC02812
KEGG koko:K00326,ko:K00387,ko:K10534
KEGG ReactionR00100,R00533,R00794,R00796
KEGG Pathwayko00520,ko00910,ko00920,ko01100,ko01120,map00520,map00910,map00920,map01100,map01120
KEGG ModuleM00531
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006082,GO:0006807,GO:0006809,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009703,GO:0009987,GO:0016020,GO:0016491,GO:0016661,GO:0017144,GO:0034641,GO:0042126,GO:0042128,GO:0042133,GO:0042136,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046857,GO:0050896,GO:0051704,GO:0051707,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0071941,GO:0071944,GO:0072593,GO:1903409,GO:2001057
Exons4
Evalue3.22e-39
EggNOG OGsCOG0543@1|root,COG2041@1|root,COG5274@1|root,KOG0534@2759|Eukaryota,KOG0535@2759|Eukaryota,KOG0537@2759|Eukaryota
EC1.6.2.2,1.7.1.1,1.7.1.2,1.7.1.3,1.8.3.1
Descriptionheme binding
Cds size564
COG categoryCI
BiGG ReactioniRC1080.CRv4_Au5_s9_g15693_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6338.2.1prot_P-wetherbeei_contig6338.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6338 1756..2775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.7481232-UTR-P-wetherbeei_contig6338:1174..14901683186905.7481232-UTR-P-wetherbeei_contig6338:1174..1490Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6338 1175..1490 -
1683186905.7625444-UTR-P-wetherbeei_contig6338:1545..17551683186905.7625444-UTR-P-wetherbeei_contig6338:1545..1755Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6338 1546..1755 -
1683186905.8017957-UTR-P-wetherbeei_contig6338:2775..29791683186905.8017957-UTR-P-wetherbeei_contig6338:2775..2979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6338 2776..2979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.7714367-CDS-P-wetherbeei_contig6338:1755..21181683186905.7714367-CDS-P-wetherbeei_contig6338:1755..2118Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6338 1756..2118 -
1683186905.7809963-CDS-P-wetherbeei_contig6338:2344..25361683186905.7809963-CDS-P-wetherbeei_contig6338:2344..2536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6338 2345..2536 -
1683186905.7919266-CDS-P-wetherbeei_contig6338:2766..27751683186905.7919266-CDS-P-wetherbeei_contig6338:2766..2775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6338 2767..2775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6338.2.1

>prot_P-wetherbeei_contig6338.2.1 ID=prot_P-wetherbeei_contig6338.2.1|Name=mRNA_P-wetherbeei_contig6338.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MSQLMDELEIGESLDFKGPLGDITYLGCGEFDIKGNRYKFDAGGMVAGGT
GITPMYRVIRGVLDDPEDRTRLSLVFANKTEEDILLRDEFDRLASDNPER
FQVWYVISEVHNYNDWHYGTGHVNADMLRGHLPPARRPDDGGKAAESRKG
GGGGGGGNKGGGEDGGSDRDGENGCKDASGGGCNGKR*
back to top

mRNA from alignment at P-wetherbeei_contig6338:1175..2979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6338.2.1 ID=mRNA_P-wetherbeei_contig6338.2.1|Name=mRNA_P-wetherbeei_contig6338.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1805bp|location=Sequence derived from alignment at P-wetherbeei_contig6338:1175..2979- (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGATTACGCAGAACAGCGGCGGCGGCAAAGACGGCAGCGGCGGCGA TGGTGGTGGCGGCGATGGTGGCGGCGGCAAGGACGGGGGCAGGCTGATCG TGCGGCCGTACACGCCGGTGACGGGGGACGAGGTAAAGGGCTACGTTGAG CTCGTCATCAAGGTGTACTTCCCCAGCCCGCCCCGTTACCGGAACGGCGG CCAGATGTCCCAGGTGAGGGAAAAGGGACGCGACTCATCAGATGAAGCGA TCCTTGTTCTGAAATTCCACGTCATTCATGCTTTGAATGTTCTTGGCAAA TTAAGGCACTGGGCGGGGTGTGGCGTCACTCACGCAAATAGTTTGTCATG CTAATGCAGAAACCCGGTGGGGAAGAAAGCAGCATCTTGACTCAGCTTGT CTTGCTCTTGTCCTCCCGCCGCCGCCTTTGGCCTCTTCCGCAGCTGATGG ACGAGCTGGAGATCGGCGAATCCCTTGATTTTAAAGGGCCGCTCGGCGAC ATCACCTACCTAGGCTGCGGCGAGTTCGACATCAAGGGCAACCGGTACAA GTTCGATGCCGGCGGCATGGTCGCCGGCGGCACCGGCATCACGCCCATGT ACCGCGTCATCCGCGGTGTGCTCGACGATCCGGAGGTGAAGCAGCGTCAC AGAGTTTGTCTCTCTAACTGCGCTCTCCTGTCCGGGACGGGGTTTCTGCT GATAGTTTTCTTCCTCATCTCCTTCACATTGCCTAGGCATTAAGCACAGG CTTCCCCGTCGGTTCTCAAGCCGGCCGCATGTTCAAGCCTGTTAAAACCT GATGCCGATTGTCCCCACTCACTTGCTTTTTACAGCCTTGATCCTCCAAC TAAGAAAACAGGACCGAACGCGGCTGTCGCTCGTCTTCGCCAACAAAACC GAGGAGGATATCCTGCTGCGGGACGAGTTCGACCGCCTGGCATCCGACAA TCCAGAGCGGTTCCAGGTGTGGTATGTTATCTCCGAAGTGCATAACTACA ACGATTGGCACTACGGTACGGGCCACGTGAACGCCGACATGCTGCGCGGG CACCTGCCGCCTGCACGCCGCCCCGATGACGGCGGCAAGGCAGCTGAGAG CAGAAAAGGAGGCGGCGGCGGCGGCGGCGGCAACAAGGGCGGTGGCGAGG ACGGCGGCAGTGACAGGGACGGCGAAAACGGCTGTAAAGATGCCAGCGGT GGTGGCTGCAATGGCAAGCGGTGACGGCGGCGGCGGCGGCTTCGGCTTTG GTAGCCCTCGAGAGGTCGGTCGCGGAGAAAGAGGCGTCTGGAGCGGCGGC AGCGGCGGCTATGCCGGCCGGCCCACGGCGGAGAGCGAGCCGGGGAGCAC CGGCGTGCTGCTGTGTGGGCCGCCGCCAATGATCGAGCAGGCGTGCATCC CGGCCCTCCAAGAGCTCGGCTTTTTTGAGGATCAGTACTTCTGTTTCTGA CGGGAGCGCGAGGGCGGGGCACGCAAAGAGAGTGATAAGAAAGGCGAGGG AATGAAATGGAGAGGGTCCAATAAGGCAGTATCCAACCCCGGCCCGTCAC GAAGAAGGTCCGACGGTGCCGATGAGGGTAAGGGTAGCGAATGGATGGCG CCGACTCGCCACCTATACACAAGCGGTAGTTGGCGTCGACGGGAAGGGAA CAGCGAGACACCGAAATACGTTCGCCGGCCGGAGGGTAGTGGGGTAGCCC GACGGGCACAGCAAAGTGCGACATGGCGATGCAACAAGGAGCAAAAGACG CAGAACGGCTCCGATCGGCGAATGTGTGCGAGGCGAATCGAAGCATAGAG GTGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6338:1175..2979-

>mRNA_P-wetherbeei_contig6338.2.1 ID=mRNA_P-wetherbeei_contig6338.2.1|Name=mRNA_P-wetherbeei_contig6338.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig6338:1175..2979- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCCAGCTGATGGACGAGCTGGAGATCGGCGAATCCCTTGATTTTAA
AGGGCCGCTCGGCGACATCACCTACCTAGGCTGCGGCGAGTTCGACATCA
AGGGCAACCGGTACAAGTTCGATGCCGGCGGCATGGTCGCCGGCGGCACC
GGCATCACGCCCATGTACCGCGTCATCCGCGGTGTGCTCGACGATCCGGA
GGACCGAACGCGGCTGTCGCTCGTCTTCGCCAACAAAACCGAGGAGGATA
TCCTGCTGCGGGACGAGTTCGACCGCCTGGCATCCGACAATCCAGAGCGG
TTCCAGGTGTGGTATGTTATCTCCGAAGTGCATAACTACAACGATTGGCA
CTACGGTACGGGCCACGTGAACGCCGACATGCTGCGCGGGCACCTGCCGC
CTGCACGCCGCCCCGATGACGGCGGCAAGGCAGCTGAGAGCAGAAAAGGA
GGCGGCGGCGGCGGCGGCGGCAACAAGGGCGGTGGCGAGGACGGCGGCAG
TGACAGGGACGGCGAAAACGGCTGTAAAGATGCCAGCGGTGGTGGCTGCA
ATGGCAAGCGGTGA
back to top