mRNA_P-wetherbeei_contig6335.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6335.7.1
Unique NamemRNA_P-wetherbeei_contig6335.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: A0A166H2E2_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5E7 TaxID=1701324 RepID=A0A166H2E2_9BACT)

HSP 1 Score: 119 bits (298), Expect = 1.070e-33
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 1
Query:   13 RRAALVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHR 210
            RRA L  RKEVIQPQLPLRLPCYDF PIT PTLDG +LAVRPPASGVAGFR VTGGVYKAREHIHR
Sbjct:   16 RRAWLDSRKEVIQPQLPLRLPCYDFTPITDPTLDGSLLAVRPPASGVAGFRGVTGGVYKAREHIHR 81          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: C9LVX4_SELS3 (Uncharacterized protein n=1 Tax=Selenomonas sputigena (strain ATCC 35185 / DSM 20758 / VPI D19B-28) TaxID=546271 RepID=C9LVX4_SELS3)

HSP 1 Score: 101 bits (251), Expect = 1.970e-26
Identity = 48/69 (69.57%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    7 VGRRAALVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHRS 213
            +  R A   RKEVIQP LP+RLPCYDF P+ +P LDGC+LAV PPA GV  FR VTGGVYKARE IHRS
Sbjct:   22 LASRTAQHLRKEVIQPHLPIRLPCYDFTPVIAPALDGCLLAVGPPALGVNDFRGVTGGVYKARERIHRS 90          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: B0TIG7_HELMI (Uncharacterized protein n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) TaxID=498761 RepID=B0TIG7_HELMI)

HSP 1 Score: 99.0 bits (245), Expect = 4.820e-25
Identity = 47/64 (73.44%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   19 AALVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHR 210
            AA + RKEVIQP LP+RLPCYDF PI  PT  GC+LAV  P SGVA FR VTGGVYKARE IHR
Sbjct:   65 AASLHRKEVIQPHLPIRLPCYDFTPIIDPTFGGCLLAVSAPTSGVADFRGVTGGVYKARERIHR 128          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: E6D4T5_CUTAC (Uncharacterized protein n=2 Tax=Actinomycetia TaxID=1760 RepID=E6D4T5_CUTAC)

HSP 1 Score: 95.5 bits (236), Expect = 3.390e-24
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   34 RKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHRS 213
            RKEVIQP LP+RLPCYD V ITSPT DG    VRPPASGV  F D+TGGVYK RE IHRS
Sbjct:   21 RKEVIQPHLPVRLPCYDLVLITSPTFDGSPTTVRPPASGVTNFHDLTGGVYKPRERIHRS 80          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: A0A1N4FL82_9MYCO (Uncharacterized protein n=8 Tax=Actinomycetia TaxID=1760 RepID=A0A1N4FL82_9MYCO)

HSP 1 Score: 95.1 bits (235), Expect = 5.240e-24
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   34 RKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHRS 213
            RKEVIQP LP+RLPCYDFVPI  PT D  +  VRP ASGV  F DVTGGVYKARE IHRS
Sbjct:   14 RKEVIQPHLPVRLPCYDFVPIADPTFDSSLQKVRPLASGVTDFHDVTGGVYKARERIHRS 73          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: A0A1K5CGM2_MYCTX (Uncharacterized protein n=1 Tax=Mycobacterium tuberculosis TaxID=1773 RepID=A0A1K5CGM2_MYCTX)

HSP 1 Score: 94.0 bits (232), Expect = 8.870e-24
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   34 RKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHR 210
            RKEVIQP LP+RLPCYDF PI  PT DG +LAV PPASGV   R VTGGVYK RE IHR
Sbjct:   11 RKEVIQPHLPIRLPCYDFTPIIYPTFDGWLLAVTPPASGVVNSRGVTGGVYKTRERIHR 69          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: B0N074_9FIRM (Uncharacterized protein n=1 Tax=Erysipelatoclostridium ramosum DSM 1402 TaxID=445974 RepID=B0N074_9FIRM)

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-23
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 MCVGRRAALVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHR 210
            MC+    A + RKEVI P +P+ +PCYDF PI +PTLD   LAVRPPASGV   R VTGGVYKARE IHR
Sbjct:    1 MCIIFDHAFLLRKEVIHPHVPVGIPCYDFTPIINPTLDSSFLAVRPPASGVINSRGVTGGVYKARERIHR 70          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: UPI001A5F1502 (Uncharacterized protein n=1 Tax=Bifidobacterium longum TaxID=216816 RepID=UPI001A5F1502)

HSP 1 Score: 96.7 bits (239), Expect = 3.330e-23
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   10 GRRAA--LVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCV-LAVRPPASGVAGFRDVTGGVYKAREHIHR 210
            GRR A  ++ RKEVIQP LP+RLPCYD VPITS TLDG +   VRPPASG A F D+TGGVYKARE IHR
Sbjct:  130 GRRTASCILRRKEVIQPHLPVRLPCYDLVPITSLTLDGSIPQGVRPPASGAAHFHDLTGGVYKARERIHR 199          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: E0XU79_9CHLR (Uncharacterized protein n=1 Tax=uncultured Chloroflexi bacterium HF0200_09I09 TaxID=710736 RepID=E0XU79_9CHLR)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-22
Identity = 45/62 (72.58%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   28 VPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHRS 213
            +PRKEVIQPQLPLRLPCYDFVP+  PTL  CV  VR    GV    DVTGGVYKARE IHRS
Sbjct:   95 LPRKEVIQPQLPLRLPCYDFVPVAGPTLGACVPKVRAATLGVTDSHDVTGGVYKARERIHRS 156          
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Match: A0A0P0YVL6_9HYPH (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A0P0YVL6_9HYPH)

HSP 1 Score: 91.3 bits (225), Expect = 2.240e-22
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   16 RAALVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASGVAGFRDVTGGVYKAREHIHR 210
            R  +V RKEVIQPQ+PLRLPCYDF P+  PT+ GC+LAV  P SG      VTGGVYKARE IHR
Sbjct:   33 RDGIVLRKEVIQPQVPLRLPCYDFTPVADPTVVGCLLAVSAPPSGRTNSHGVTGGVYKARERIHR 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6335.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A166H2E2_9BACT1.070e-3387.88Uncharacterized protein n=1 Tax=uncultured bacteri... [more]
C9LVX4_SELS31.970e-2669.57Uncharacterized protein n=1 Tax=Selenomonas sputig... [more]
B0TIG7_HELMI4.820e-2573.44Uncharacterized protein n=1 Tax=Heliobacterium mod... [more]
E6D4T5_CUTAC3.390e-2475.00Uncharacterized protein n=2 Tax=Actinomycetia TaxI... [more]
A0A1N4FL82_9MYCO5.240e-2475.00Uncharacterized protein n=8 Tax=Actinomycetia TaxI... [more]
A0A1K5CGM2_MYCTX8.870e-2474.58Uncharacterized protein n=1 Tax=Mycobacterium tube... [more]
B0N074_9FIRM1.300e-2364.29Uncharacterized protein n=1 Tax=Erysipelatoclostri... [more]
UPI001A5F15023.330e-2371.43Uncharacterized protein n=1 Tax=Bifidobacterium lo... [more]
E0XU79_9CHLR1.120e-2272.58Uncharacterized protein n=1 Tax=uncultured Chlorof... [more]
A0A0P0YVL6_9HYPH2.240e-2266.15Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6335contigP-wetherbeei_contig6335:2433..2645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog498761.HM1_3150
Model size213
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.9e-26
EggNOG OGs2E4EA@1|root,32Z9I@2|Bacteria,1VG12@1239|Firmicutes,24R4R@186801|Clostridia
DescriptionORF located using Blastx
Cds size213
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.673915-CDS-P-wetherbeei_contig6335:2432..26451683186905.673915-CDS-P-wetherbeei_contig6335:2432..2645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6335 2433..2645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6335.7.1prot_P-wetherbeei_contig6335.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6335 2433..2645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6335.7.1

>prot_P-wetherbeei_contig6335.7.1 ID=prot_P-wetherbeei_contig6335.7.1|Name=mRNA_P-wetherbeei_contig6335.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MCVGRRAALVPRKEVIQPQLPLRLPCYDFVPITSPTLDGCVLAVRPPASG
VAGFRDVTGGVYKAREHIHRS
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mRNA from alignment at P-wetherbeei_contig6335:2433..2645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6335.7.1 ID=mRNA_P-wetherbeei_contig6335.7.1|Name=mRNA_P-wetherbeei_contig6335.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:2433..2645+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTGTGGGCCGTCGTGCGGCCCTCGTCCCTAGAAAGGAGGTGATCCA GCCGCAGCTTCCGCTACGGCTACCTTGTTACGACTTCGTCCCAATCACCA GCCCCACCCTCGACGGCTGCGTCCTTGCGGTTCGCCCACCGGCTTCAGGT GTTGCCGGCTTTCGTGACGTGACGGGCGGTGTGTACAAGGCCCGGGAACA TATTCACCGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6335:2433..2645+

>mRNA_P-wetherbeei_contig6335.7.1 ID=mRNA_P-wetherbeei_contig6335.7.1|Name=mRNA_P-wetherbeei_contig6335.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:2433..2645+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGTGTGGGCCGTCGTGCGGCCCTCGTCCCTAGAAAGGAGGTGATCCA
GCCGCAGCTTCCGCTACGGCTACCTTGTTACGACTTCGTCCCAATCACCA
GCCCCACCCTCGACGGCTGCGTCCTTGCGGTTCGCCCACCGGCTTCAGGT
GTTGCCGGCTTTCGTGACGTGACGGGCGGTGTGTACAAGGCCCGGGAACA
TATTCACCGCAGC
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