mRNA_P-wetherbeei_contig6335.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6335.3.1
Unique NamemRNA_P-wetherbeei_contig6335.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Match: A0A2V6T0E3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6T0E3_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 5.170e-9
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  154 GSETVGAKFHGREGNSPDRQLRSR----MGKGVAARRQPGGWLRSSHP 285
            GS+T G K   REGN+PDRQLRS     +GK V + RQPGGWLR SHP
Sbjct:   31 GSQTAGDKLRRREGNNPDRQLRSLSPGLVGKDVGSPRQPGGWLRGSHP 78
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BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Match: A0A0N4VQR8_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VQR8_ENTVE)

HSP 1 Score: 57.4 bits (137), Expect = 5.350e-9
Identity = 31/48 (64.58%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  154 GSETVGAKFHGREGNSPDRQLR----SRMGKGVAARRQPGGWLRSSHP 285
            GSET G K   REGNSPD QLR      +GK V  RRQPGGWL SSHP
Sbjct:   22 GSETAGDKLRRREGNSPDHQLRPLSGDSVGKDVELRRQPGGWLGSSHP 69
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BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Match: E6PDN8_9ZZZZ (Uncharacterized protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=E6PDN8_9ZZZZ)

HSP 1 Score: 60.1 bits (144), Expect = 8.660e-9
Identity = 40/76 (52.63%), Postives = 42/76 (55.26%), Query Frame = -3 
Query:    2 GTLAGGLGCFPLDHGT*LPQSHSRSTLAAFGV*DGSVSGKPHR--RSSALPPPWLPTKAVPKYISGRTSYLRVRLA 223
            GTLA  LGCFP DHG   PQS  R  L   G+      G P R    S L P  L   A P+ ISGRTSYLRVRLA
Sbjct:   33 GTLAVDLGCFPFDHGAYPPQSDCR--LIRHGIRSLMEFGNPVRPLALSVLYPRGLTNDASPQTISGRTSYLRVRLA 106
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BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Match: A0A1B7VFR7_9NOST (Uncharacterized protein n=1 Tax=Anabaena sp. WA113 TaxID=1710889 RepID=A0A1B7VFR7_9NOST)

HSP 1 Score: 54.7 bits (130), Expect = 5.780e-8
Identity = 34/73 (46.58%), Postives = 41/73 (56.16%), Query Frame = -3 
Query:   23 GTLAGGLGCFPLDHGT*LPQSHSRS------TLAAFGV*DGSVSGKPHRRSSALPPPWLPTKAVPKYISGRTS 223
            GTLAGGLGCFPLD+    P SH +       +L+ FG       G P R  + L PP L   A P++ISGRTS
Sbjct:    2 GTLAGGLGCFPLDNEAYPPLSHWQCLPLGILSLSRFGT------GLPARTETVLYPPNLIITAAPQHISGRTS 68
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BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Match: A0A5K1JJB4_9ACTN (Uncharacterized protein n=1 Tax=Collinsella aerofaciens TaxID=74426 RepID=A0A5K1JJB4_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 1.070e-6
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   76 EVAHWNGDGASRLLTRLKRRMPPGST--GSETVGAKFHGREGNSPDRQLRS----RMGKGVAARRQPGGWLRSSHP 285
            EV H   +GAS   T   R    G    GS+++ AK   REGNSPDR LRS    R+ K V   RQPG WLRSSHP
Sbjct:   27 EVEHRMDEGASPP-TESNRTPNAGGPERGSQSMWAKLCAREGNSPDRPLRSPSSSRVAKDVRPPRQPGCWLRSSHP 101
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BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Match: E0XUC6_9DELT (Uncharacterized protein n=5 Tax=environmental samples TaxID=34033 RepID=E0XUC6_9DELT)

HSP 1 Score: 48.1 bits (113), Expect = 2.200e-5
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = -1 
Query:   10 VWAVSLSTMELSSHSLTPGRPWR--HSAFETGQ*AGSPIAVPVRYLHHGSRPRLYLNTFRGEPAISGF 207
            V  VSLST E+SS  LTP +      S    G   G+ +  PV YL   S  RLYLN FRGEPAIS F
Sbjct:    2 VRVVSLSTTEVSSRRLTPVKQLAGIRSLVGFGTLVGA-LVHPVLYLRR-SITRLYLNIFRGEPAISEF 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6335.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V6T0E3_9BACT5.170e-962.50Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A0N4VQR8_ENTVE5.350e-964.58Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
E6PDN8_9ZZZZ8.660e-952.63Uncharacterized protein n=1 Tax=mine drainage meta... [more]
A0A1B7VFR7_9NOST5.780e-846.58Uncharacterized protein n=1 Tax=Anabaena sp. WA113... [more]
A0A5K1JJB4_9ACTN1.070e-650.00Uncharacterized protein n=1 Tax=Collinsella aerofa... [more]
E0XUC6_9DELT2.200e-550.00Uncharacterized protein n=5 Tax=environmental samp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6335contigP-wetherbeei_contig6335:684..983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3712.Bo01051s080.1
Model size288
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.6e-06
EggNOG OGs2D471@1|root,2SU4E@2759|Eukaryota,3813M@33090|Viridiplantae,3GQHF@35493|Streptophyta
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.6078837-CDS-P-wetherbeei_contig6335:683..7451683186905.6078837-CDS-P-wetherbeei_contig6335:683..745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6335 684..745 -
1683186905.6171632-CDS-P-wetherbeei_contig6335:757..9141683186905.6171632-CDS-P-wetherbeei_contig6335:757..914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6335 758..914 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.6255429-UTR-P-wetherbeei_contig6335:914..9831683186905.6255429-UTR-P-wetherbeei_contig6335:914..983Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6335 915..983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6335.3.1prot_P-wetherbeei_contig6335.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6335 684..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6335.3.1

>prot_P-wetherbeei_contig6335.3.1 ID=prot_P-wetherbeei_contig6335.3.1|Name=mRNA_P-wetherbeei_contig6335.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MVEVAHWNGDGASRLLTRLKRRMPPGSTGSETVGAKFHGREGNSPDRQLR
SRMGKGVAARRQPGGWLRSSHP*
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mRNA from alignment at P-wetherbeei_contig6335:684..983-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6335.3.1 ID=mRNA_P-wetherbeei_contig6335.3.1|Name=mRNA_P-wetherbeei_contig6335.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:684..983- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAAGCGAACCCGGAGATAGCTGGTTCTCCCCGAAATGTATTTAGGT
ACAGCCTTGGTCGGGAGCCATGGTGGAGGTAGCGCACTGGAACGGCGATG
GGGCTTCCCGCTTACTGACCCGTCTCAAACGCCGAATGCCGCCAGGGTCG
ACCGGGAGTGAGACTGTGGGAGCTAAGTTCCATGGTCGAGAGGGAAACAG
CCCAGACCGCCAGCTAAGGTCCCGAAGTGCATGCTAAGTGGGCAAGGGAG
TCGCGGCGCGCAGACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6335:684..983-

>mRNA_P-wetherbeei_contig6335.3.1 ID=mRNA_P-wetherbeei_contig6335.3.1|Name=mRNA_P-wetherbeei_contig6335.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig6335:684..983- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGAGGTAGCGCACTGGAACGGCGATGGGGCTTCCCGCTTACTGAC
CCGTCTCAAACGCCGAATGCCGCCAGGGTCGACCGGGAGTGAGACTGTGG
GAGCTAAGTTCCATGGTCGAGAGGGAAACAGCCCAGACCGCCAGCTAAGG
TCCCGAATGGGCAAGGGAGTCGCGGCGCGCAGACAACCAGGAGGTTGGCT
TAGAAGCAGCCATCCTTGA
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