mRNA_P-wetherbeei_contig633.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig633.2.1
Unique NamemRNA_P-wetherbeei_contig633.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: A0A835YLN5_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.920e-21
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 QVRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            Q R AVPDL W+PLF+ RC +AKEALA++ D+LH  VVEA+  DNR HM+ + ++YQ++A  LV EPAD+AELRALQ+ 
Sbjct:    4 QARKAVPDLCWFPLFSTRCLEAKEALARKADSLHWRVVEAIGQDNRVHMSQLCEQYQEVANALVTEPADSAELRALQQL 82
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: D7FNW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.340e-20
Identity = 45/79 (56.96%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QVRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            ++R AVPDL  YP+F+V+C +A E+LAK+ DALHTL++E VA DNR HMAA+ + YQ++  +LV EP+D+AEL++LQE+
Sbjct:  132 EIREAVPDLNNYPMFSVKCLEATESLAKKADALHTLIMEEVASDNRTHMAAIGKEYQEMVNQLVTEPSDSAELKSLQEY 210
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: D7FT69_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT69_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.180e-20
Identity = 45/79 (56.96%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QVRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            ++R AVPDL  YP+F+V+C +A E+LAK+ DALHTL++E VA DNR HMAA+ + YQ++  +LV EP+D+AEL++LQE+
Sbjct:  983 EIREAVPDLNNYPMFSVKCLEATESLAKKADALHTLIMEEVASDNRTHMAAIGKEYQEMVNQLVTEPSDSAELKSLQEY 1061
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: A0A6H5L4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.510e-19
Identity = 44/79 (55.70%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QVRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            ++R AVPDL  YP+F+V+C +A E+LAK+ +ALHTL++E VA DNR HMAA+ + YQ++  +LV EP+D+AEL++LQE+
Sbjct: 1113 EIREAVPDLNNYPMFSVKCLEATESLAKKANALHTLIMEEVASDNRTHMAAIGKEYQEMVNQLVTEPSDSAELKSLQEY 1191
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: A0A482SUL6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUL6_9ARCH)

HSP 1 Score: 65.1 bits (157), Expect = 1.790e-10
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    4 VRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            ++  +PD+ +YP+F VRC + K+ L ++   L + V++A+  +NR HM  ++Q+Y ++A  L+ +  D+AELRALQEF
Sbjct:  721 IKTDIPDVCYYPMFEVRCVELKDLLIRQCKFLLSHVMDAIVEENRNHMINISQKYNEVANTLIADITDSAELRALQEF 798
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: A0A8K1FD19_PYTOL (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A8K1FD19_PYTOL)

HSP 1 Score: 54.7 bits (130), Expect = 8.260e-7
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   34 YPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            + LFAV C++ K+ L  +V  L T ++  VA +N + MA+M   Y+ I QRL+ EP D+ EL+AL  F
Sbjct:  848 FRLFAVSCAECKQKLVAKVKTLSTKILSRVAAENTKQMASMIAEYEKIGQRLIAEPLDSFELKALDAF 915
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BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Match: A0A2D4BMI7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMI7_PYTIN)

HSP 1 Score: 52.4 bits (124), Expect = 5.400e-6
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    1 QVRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMAAMAQRYQDIAQRLVREPADAAELRALQEF 237
            +V + + D   + LFAV C+DAK+ L  ++ +    ++  V+ DN   M +M   Y+ I QRL+ EP D+ EL+AL  F
Sbjct:  914 RVMSEIEDKYSFQLFAVSCADAKQKLITKLRSFEAKILSKVSSDNTAQMTSMIAEYEKIVQRLITEPLDSFELKALDAF 992
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig633.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YLN5_9STRA4.920e-2159.49Dynein heavy chain and region D6 of dynein motor-d... [more]
D7FNW4_ECTSI2.340e-2056.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT69_ECTSI3.180e-2056.96Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L4R7_9PHAE1.510e-1955.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SUL6_9ARCH1.790e-1039.74Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A8K1FD19_PYTOL8.260e-742.65Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
A0A2D4BMI7_PYTIN5.400e-636.71Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig633contigP-wetherbeei_contig633:4570..4806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNW4
Preferred nameDNHD1
PFAMsAAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0051959,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons1
Evalue3.84e-21
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size237
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.3452246-CDS-P-wetherbeei_contig633:4569..48061683186905.3452246-CDS-P-wetherbeei_contig633:4569..4806Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 4570..4806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig633.2.1prot_P-wetherbeei_contig633.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig633 4570..4806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig633.2.1

>prot_P-wetherbeei_contig633.2.1 ID=prot_P-wetherbeei_contig633.2.1|Name=mRNA_P-wetherbeei_contig633.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
QVRAAVPDLAWYPLFAVRCSDAKEALAKRVDALHTLVVEAVAGDNRRHMA
AMAQRYQDIAQRLVREPADAAELRALQEF
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mRNA from alignment at P-wetherbeei_contig633:4570..4806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig633.2.1 ID=mRNA_P-wetherbeei_contig633.2.1|Name=mRNA_P-wetherbeei_contig633.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig633:4570..4806- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTACGGGCGGCGGTGCCGGACCTGGCGTGGTACCCGCTCTTTGCCGT
GCGGTGCTCCGACGCAAAGGAGGCCCTCGCCAAGCGCGTCGACGCCCTCC
ATACCTTGGTGGTCGAGGCGGTGGCGGGCGACAACCGGCGGCACATGGCG
GCCATGGCTCAACGCTACCAGGACATTGCGCAACGGCTGGTGCGGGAGCC
GGCGGACGCGGCGGAGCTGCGGGCGCTGCAGGAATTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig633:4570..4806-

>mRNA_P-wetherbeei_contig633.2.1 ID=mRNA_P-wetherbeei_contig633.2.1|Name=mRNA_P-wetherbeei_contig633.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig633:4570..4806- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTACGGGCGGCGGTGCCGGACCTGGCGTGGTACCCGCTCTTTGCCGT
GCGGTGCTCCGACGCAAAGGAGGCCCTCGCCAAGCGCGTCGACGCCCTCC
ATACCTTGGTGGTCGAGGCGGTGGCGGGCGACAACCGGCGGCACATGGCG
GCCATGGCTCAACGCTACCAGGACATTGCGCAACGGCTGGTGCGGGAGCC
GGCGGACGCGGCGGAGCTGCGGGCGCTGCAGGAATTC
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