mRNA_P-wetherbeei_contig6329.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A1F4A5S4_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A5S4_9PROT) HSP 1 Score: 247 bits (630), Expect = 1.540e-80 Identity = 123/193 (63.73%), Postives = 157/193 (81.35%), Query Frame = 1
Query: 1 SMLLACCLLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKA-PPAGAPLPLKPATDVANPRENPAGA 576
++ +AC L+ A E+ADRDKP+NLEAD+VTVDD KQ ATF G VVLTQGT+VIRGDRM V+QD DGF++G+++G LA FRQKREG+DEYI+G+AERIEYD +A+K+QMF RA +K+ D+VRG+YISY+ TEFF+V GGG +AA+ NP+GRVRA++QPKS+ PPA P+ LKPATD+A PRE P A
Sbjct: 7 ALAIACALVLAGAAHGEKADRDKPINLEADRVTVDDAKQLATFEGNVVLTQGTMVIRGDRMEVRQDYDGFRHGISWGKLAYFRQKREGFDEYIEGWAERIEYDGRADKVQMFTRAAMKRGQDEVRGDYISYDATTEFFQVIGGGAKAASPNNPDGRVRAVMQPKSREKPPASPPVTLKPATDLAAPREEPGAA 199
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A1F4DTU7_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DTU7_9PROT) HSP 1 Score: 246 bits (627), Expect = 7.230e-80 Identity = 129/196 (65.82%), Postives = 159/196 (81.12%), Query Frame = 1
Query: 1 SMLLACC-LLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKA-PPAGAPLPLKPATDVANPRENPAGAPR 582
++L CC LL TA AE+ADRDKP+NLEAD+VTVDD KQ + F G VVLTQGT+VIRG RM V+QD DGFK G A+G+LA FRQKREG+DEYI+G+AERIEYD +A+K+QMF RAY+K+ D+VRGNYISY+ ATEFF+V GGG +AAT NP+GRVRA++QPKSK PPA AP+ L+PA ++ PRE GAP+
Sbjct: 21 AILATCCALLLATASHAEKADRDKPINLEADRVTVDDAKQVSIFDGNVVLTQGTMVIRGYRMEVRQDNDGFKRGTAWGDLAYFRQKREGFDEYIEGWAERIEYDGRADKMQMFVRAYMKRGEDEVRGNYISYDAATEFFQVIGGGAKAATPNNPDGRVRAVLQPKSKQKPPAAAPVSLQPADKISAPREE-IGAPK 215
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A7C3JPE8_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JPE8_9PROT) HSP 1 Score: 244 bits (622), Expect = 2.610e-79 Identity = 126/189 (66.67%), Postives = 151/189 (79.89%), Query Frame = 1
Query: 13 ACC---LLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKA-PPAGAPLPLKPATDVANPRENP 567
ACC LLA AE+ADRDKP+NLEAD+VT+DD KQTA F G VVLTQGTL IRGDRM V+QD +GF+YG +G+LA FRQKREGYDEYI+G+AERIEYD +AE +QMF RA +++A D+VRGNYISY+ TEF++V GGG +AATA NPEGRVRA+IQPK K PPA P+ LKPA ++ PRE P
Sbjct: 9 ACCALALLAAPLARAEKADRDKPINLEADRVTIDDAKQTAMFEGNVVLTQGTLQIRGDRMEVRQDKEGFRYGTTWGDLAHFRQKREGYDEYIEGWAERIEYDGRAETMQMFARARMRRAQDEVRGNYISYDARTEFYQVVGGGPRAATANNPEGRVRAVIQPKPKEQPPAAPPVALKPAPAISAPREEP 197
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A1F4DKJ3_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DKJ3_9PROT) HSP 1 Score: 243 bits (619), Expect = 1.190e-78 Identity = 123/189 (65.08%), Postives = 150/189 (79.37%), Query Frame = 1
Query: 16 CCLLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKAPPAGAPLPLKPATDVANPRENPAGAPR 582
C L+ TA AE+ADR+KP+NLEAD+VTVDD +Q A F G VVLTQGTL+IRGDRM V+QD DGFK+G +GNLA FRQKREGYD+YI+G+AERIEYD +A+K+QMFNRA +K+ D+VRGNYISY+ TEFF+V GGG +AAT NPEGRVRA++QPK K AP+ L PA + PRE AGAP+
Sbjct: 28 CTLIFATAAYAEKADREKPINLEADRVTVDDARQIAVFEGHVVLTQGTLMIRGDRMQVRQDNDGFKHGTTWGNLAYFRQKREGYDDYIEGWAERIEYDGRADKMQMFNRALMKRGQDEVRGNYISYDATTEFFQVIGGGPKAATPNNPEGRVRAVLQPKPKEKTPAAPVSLTPAEKLGAPREE-AGAPK 215
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A3N5WHT5_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WHT5_9PROT) HSP 1 Score: 234 bits (596), Expect = 5.500e-75 Identity = 120/181 (66.30%), Postives = 147/181 (81.22%), Query Frame = 1
Query: 19 CLLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKAPPAG-APLPLKPATDVANPR 558
C PT+ AE+ADR+KP+NLEAD+VTVDD KQ +TF GRVVLTQGTL+IRGDRM V+QD+ GFKYG +GNLA FRQKR+GYDE+I+G+AERIEYD +A+K+QMFNRA +KKA D+VRGNYISY+ TEFF+V GGG +AA+A NP+GRVR ++QPKSK PA A P+KP PR
Sbjct: 42 CAAGPTS--AEKADREKPINLEADRVTVDDAKQVSTFEGRVVLTQGTLIIRGDRMEVRQDSQGFKYGTTWGNLAYFRQKRDGYDEFIEGWAERIEYDGRADKVQMFNRASMKKAGDEVRGNYISYDANTEFFQVIGGGAKAASAENPDGRVRVVLQPKSKDKPAPQATDPVKPEAAPKQPR 220
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A1F4BN70_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BN70_9PROT) HSP 1 Score: 228 bits (581), Expect = 5.250e-73 Identity = 119/187 (63.64%), Postives = 145/187 (77.54%), Query Frame = 1
Query: 10 LACCLLAPTAG--MAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKAPPAGAP-LPLKPATDVANPRE 561
LACC L AG AERADR+KPVNLEAD+VT+DD +QTA F G V+LTQGT+ +RGDRM V+QD +GF+ G +G A FRQKREGYDEY++G+AERIEYD +AE ++MF+RA LK+ D+VRGN ISY+ TEFF+VTGGG +AA NPEGRVRA+IQPK K P AP + LKPA +A PRE
Sbjct: 14 LACCALLAVAGPLRAERADREKPVNLEADRVTIDDARQTALFEGNVLLTQGTMQLRGDRMEVRQDKEGFRLGTTWGKPAYFRQKREGYDEYVEGWAERIEYDGRAETMRMFDRAQLKRGPDEVRGNTISYDARTEFFQVTGGGAKAAAPNNPEGRVRAVIQPKPKDKPGAAPPVSLKPAESIAAPRE 200
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A7C2UIE1_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2UIE1_9PROT) HSP 1 Score: 222 bits (565), Expect = 1.780e-70 Identity = 116/193 (60.10%), Postives = 149/193 (77.20%), Query Frame = 1
Query: 7 LLACCLLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKA-PPAGAPLPLKPATDVANPRENPAGAPR 582
L A +A AE+ADR+KP++LEAD+VTVD+ KQ A F G VVLTQGTL+IRGDRM V+QD GF++G+ +GNLA FRQKREG+DEYI+G+AERIEYD +A+K+QMFNRA +K+ D+V G+YISY+ +EFF+V GG ++A+A P+GRVRAI+QPK K PPA AP+PLKPA + RE APR
Sbjct: 24 LAAAIAFFSSAAHAEKADREKPIHLEADRVTVDEAKQVAVFEGNVVLTQGTLMIRGDRMQVRQDDAGFRHGITWGNLAYFRQKREGFDEYIEGWAERIEYDGRADKVQMFNRASMKRGQDEVHGSYISYDAVSEFFQVVGG--KSASAGAPQGRVRAILQPKPKEKPPASAPVPLKPADKLGTAREEDRAAPR 214
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A0S8BW46_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8BW46_9PROT) HSP 1 Score: 212 bits (539), Expect = 6.990e-67 Identity = 110/181 (60.77%), Postives = 139/181 (76.80%), Query Frame = 1
Query: 22 LLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSKAPPAGAP-LPLKPATDVANPRE 561
L A + MAER DRDKP+NLEAD+VT++D KQ A F G VVL QGTL +RGDRM V+QD GFK+G A+GNLA FRQKR+G DEYI+G+AER+EYD +AE ++MFNRA +K+ D+VRGN+ISY+ +EF++V GGG +AA A GRVRA+IQPK K PA +P L LKP+ + PRE
Sbjct: 2 LHASSVAMAERGDRDKPINLEADKVTINDAKQVAVFEGNVVLRQGTLELRGDRMEVRQDKAGFKHGTAWGNLAYFRQKRDGVDEYIEGWAERLEYDGRAETMKMFNRARVKRGQDEVRGNFISYDGKSEFYQVVGGGAKAADAKGSGGRVRAVIQPKPKTKPAASPPLGLKPSEALTPPRE 182
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: A0A6F8VFJ9_9PROT (Lipopolysaccharide export system protein LptA n=1 Tax=Sulfurimicrobium lacus TaxID=2715678 RepID=A0A6F8VFJ9_9PROT) HSP 1 Score: 210 bits (535), Expect = 3.790e-66 Identity = 106/182 (58.24%), Postives = 137/182 (75.27%), Query Frame = 1
Query: 22 LLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPK---SKAPPAGAPLPLKPATDVANPR 558
LLAP +AE ADRDKP+NLEAD VTVDD + +T+ G V LTQGTL+IR D++VV +DA G ++G AYGN ASFRQKREG DEY++GY +RIEYD K +K+++F +A +K+ D+VRGNYISY+ TEFF+ GGGK+ A+ +GRV A+IQPK K+P A AP+PLK A +A PR
Sbjct: 15 LLAPATVLAELADRDKPINLEADTVTVDDATKVSTYMGNVQLTQGTLLIRADKLVVTEDATGLQHGTAYGNPASFRQKREGLDEYVEGYGQRIEYDGKNDKVELFTQARMKRGQDEVRGNYISYDAKTEFFQALGGGKEVASPGREKGRVHAVIQPKPKPGKSPAAPAPVPLKGAESIAQPR 196
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Match: S6AEZ8_SULDS (Lipopolysaccharide export system protein LptA n=1 Tax=Sulfuricella denitrificans (strain DSM 22764 / NBRC 105220 / skB26) TaxID=1163617 RepID=S6AEZ8_SULDS) HSP 1 Score: 207 bits (526), Expect = 9.400e-65 Identity = 108/180 (60.00%), Postives = 138/180 (76.67%), Query Frame = 1
Query: 22 LLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQGTLVIRGDRMVVQQDADGFKYGVAYGNLASFRQKREGYDEYIDGYAERIEYDSKAEKLQMFNRAYLKKANDDVRGNYISYEVATEFFKVTGGGKQAATAANPEGRVRAIIQPKSK-APPAGAPLPLKPATDVANPR 558
L+A AE+ADRDKP+NLEAD TVDD K+ + + G V+LTQGTL IR +++VV++DA+GF+ G AYGNLASFRQKREGYDEYI+GYA RIEYD + + +Q+F++A +K+ D+ +GNYISY+ TEFF+V GG K+ ATA NP GRVR +IQPK K A P P LKPA +ANPR
Sbjct: 20 LVAAPWAHAEKADRDKPINLEADTATVDDAKKISIYEGNVILTQGTLQIRANKLVVKEDAEGFQLGTAYGNLASFRQKREGYDEYIEGYALRIEYDQRKDLVQLFSQARMKRGLDEAQGNYISYDGKTEFFQVIGG-KETATANNPRGRVRTVIQPKQKIATPDAKPTVLKPAESIANPR 198 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6329.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6329.1.1 >prot_P-wetherbeei_contig6329.1.1 ID=prot_P-wetherbeei_contig6329.1.1|Name=mRNA_P-wetherbeei_contig6329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp MLLACCLLAPTAGMAERADRDKPVNLEADQVTVDDNKQTATFTGRVVLTQback to top mRNA from alignment at P-wetherbeei_contig6329:635..1219- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6329.1.1 ID=mRNA_P-wetherbeei_contig6329.1.1|Name=mRNA_P-wetherbeei_contig6329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig6329:635..1219- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6329:635..1219- >mRNA_P-wetherbeei_contig6329.1.1 ID=mRNA_P-wetherbeei_contig6329.1.1|Name=mRNA_P-wetherbeei_contig6329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig6329:635..1219- (Phaeothamnion wetherbeei SAG_119_79)back to top |