mRNA_P-wetherbeei_contig6326.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6326.2.1
Unique NamemRNA_P-wetherbeei_contig6326.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6326.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6326contigP-wetherbeei_contig6326:1791..3180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1093
Hectar predicted targeting categoryother localisation
Exons2
Cds size990
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.1221452-UTR-P-wetherbeei_contig6326:1790..18911683186905.1221452-UTR-P-wetherbeei_contig6326:1790..1891Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6326 1791..1891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.1312125-CDS-P-wetherbeei_contig6326:1891..24291683186905.1312125-CDS-P-wetherbeei_contig6326:1891..2429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6326 1892..2429 -
1683186905.1394842-CDS-P-wetherbeei_contig6326:2728..31801683186905.1394842-CDS-P-wetherbeei_contig6326:2728..3180Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6326 2729..3180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6326.2.1prot_P-wetherbeei_contig6326.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6326 1892..3180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6326.2.1

>prot_P-wetherbeei_contig6326.2.1 ID=prot_P-wetherbeei_contig6326.2.1|Name=mRNA_P-wetherbeei_contig6326.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
GGGDAAAAVEGANGGSGRRGRGGRGSAGAGASGPATPSPQKAAALEALYT
LQLPPHLAVAAASVAALASAGAPSPFALSPLPPSPPDSLEALTVDRGSVS
PHASAPSPARPQWPKNGASKPDKSHDKDRTAAQRSSQPQQLEAAPSSSNP
SPTRDRFAAFFAGVTGKFRGRTGSVPHAHGDEDDTVAAVTATGADAWSAQ
GGADATGGGSSGGGGGGTGGTGGWSDHRDFRPRSRSVFTEHFNLGFLGKD
RLERARSLGARGSGGRGGMEDKGAAGGGGGGDVSPNGGGFHKNRRHSSHV
GKSCGGFDASKAAMAAGPGPTRADAQKGA*
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mRNA from alignment at P-wetherbeei_contig6326:1791..3180-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6326.2.1 ID=mRNA_P-wetherbeei_contig6326.2.1|Name=mRNA_P-wetherbeei_contig6326.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1390bp|location=Sequence derived from alignment at P-wetherbeei_contig6326:1791..3180- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGATGCCGCTGCGGCCGTCGAGGGTGCAAACGGCGGCAGCGG
GCGCAGAGGTCGGGGCGGCCGCGGCTCCGCTGGAGCGGGCGCGTCGGGCC
CAGCCACGCCGTCGCCGCAAAAAGCTGCGGCGTTAGAAGCACTCTATACG
CTGCAGCTTCCGCCTCACCTCGCCGTCGCGGCTGCTTCCGTGGCCGCCCT
TGCCTCGGCCGGCGCCCCCTCTCCTTTCGCGCTGTCGCCGCTGCCGCCGT
CGCCGCCGGATTCGTTAGAGGCGTTGACGGTAGATCGCGGCTCGGTGTCG
CCACACGCATCGGCGCCGTCGCCGGCGAGGCCGCAGTGGCCGAAGAATGG
GGCGTCGAAGCCGGACAAATCGCATGACAAGGACCGAACAGCGGCGCAGC
GGAGCAGTCAGCCGCAGCAGCTGGAAGCAGCTCCTTCCTCTAGCAATCCC
AGGTCAGTTGTTTATTCATTCACGCGCTCCCTTCGTGGCTCTCTATACTG
GTTTGAGAGGCGTCGTCGAAGTCGACTGTCCGAAGAACCGAAGGAAGGCG
GCTTTTTTAACTGCTGATAGTCCTCATCCACTTTTGTCCTCTGACTGCAG
CTTCGTTCAAAGAAATTCTACAAAATTCTGCATTTAGATCATGACAGCAT
CATCTTTACATGCTCTGCGTTCTCATTTCTGCGAGCACCACACACTTCTC
TCTCTTTCTCCCTCCCTGTTTGTATCTCTTTCTCTTTTCTCTCTCTGCCA
GCCCGACCCGGGACCGCTTCGCCGCCTTCTTTGCCGGAGTCACCGGCAAG
TTCCGCGGCCGCACCGGTTCCGTCCCACACGCCCACGGCGACGAAGATGA
TACCGTCGCCGCCGTCACAGCCACCGGGGCCGACGCGTGGTCAGCGCAGG
GTGGCGCCGACGCTACTGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGGC
ACGGGCGGAACCGGCGGCTGGAGCGACCACCGCGACTTCCGGCCGCGGTC
GAGAAGCGTCTTTACGGAGCACTTCAACCTCGGCTTCTTGGGGAAGGACC
GGCTTGAGCGCGCCCGGAGCCTTGGCGCCCGCGGCAGCGGCGGCCGCGGC
GGGATGGAGGACAAAGGTGCCGCTGGCGGCGGCGGCGGCGGCGACGTTAG
CCCGAACGGAGGCGGCTTTCACAAGAACCGTCGGCATTCCAGCCATGTGG
GCAAGAGCTGCGGTGGTTTTGACGCCAGCAAGGCAGCGATGGCGGCGGGG
CCGGGGCCGACAAGAGCGGATGCGCAGAAGGGCGCCTGATTTGTCTTTTA
AATCTTGCTGCCCTAGCTGCGAGGCCCGATTTGTCTGTCCGGGCTCCCTC
TTTAGAGATTCCTTGCAAGAACTAATTAAAGTGCACTTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6326:1791..3180-

>mRNA_P-wetherbeei_contig6326.2.1 ID=mRNA_P-wetherbeei_contig6326.2.1|Name=mRNA_P-wetherbeei_contig6326.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig6326:1791..3180- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGCGATGCCGCTGCGGCCGTCGAGGGTGCAAACGGCGGCAGCGG
GCGCAGAGGTCGGGGCGGCCGCGGCTCCGCTGGAGCGGGCGCGTCGGGCC
CAGCCACGCCGTCGCCGCAAAAAGCTGCGGCGTTAGAAGCACTCTATACG
CTGCAGCTTCCGCCTCACCTCGCCGTCGCGGCTGCTTCCGTGGCCGCCCT
TGCCTCGGCCGGCGCCCCCTCTCCTTTCGCGCTGTCGCCGCTGCCGCCGT
CGCCGCCGGATTCGTTAGAGGCGTTGACGGTAGATCGCGGCTCGGTGTCG
CCACACGCATCGGCGCCGTCGCCGGCGAGGCCGCAGTGGCCGAAGAATGG
GGCGTCGAAGCCGGACAAATCGCATGACAAGGACCGAACAGCGGCGCAGC
GGAGCAGTCAGCCGCAGCAGCTGGAAGCAGCTCCTTCCTCTAGCAATCCC
AGCCCGACCCGGGACCGCTTCGCCGCCTTCTTTGCCGGAGTCACCGGCAA
GTTCCGCGGCCGCACCGGTTCCGTCCCACACGCCCACGGCGACGAAGATG
ATACCGTCGCCGCCGTCACAGCCACCGGGGCCGACGCGTGGTCAGCGCAG
GGTGGCGCCGACGCTACTGGCGGCGGCAGCAGCGGCGGCGGCGGCGGCGG
CACGGGCGGAACCGGCGGCTGGAGCGACCACCGCGACTTCCGGCCGCGGT
CGAGAAGCGTCTTTACGGAGCACTTCAACCTCGGCTTCTTGGGGAAGGAC
CGGCTTGAGCGCGCCCGGAGCCTTGGCGCCCGCGGCAGCGGCGGCCGCGG
CGGGATGGAGGACAAAGGTGCCGCTGGCGGCGGCGGCGGCGGCGACGTTA
GCCCGAACGGAGGCGGCTTTCACAAGAACCGTCGGCATTCCAGCCATGTG
GGCAAGAGCTGCGGTGGTTTTGACGCCAGCAAGGCAGCGATGGCGGCGGG
GCCGGGGCCGACAAGAGCGGATGCGCAGAAGGGCGCCTGA
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