mRNA_P-wetherbeei_contig6326.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6326.1.1
Unique NamemRNA_P-wetherbeei_contig6326.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7R9UI75_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UI75_DIALT)

HSP 1 Score: 95.1 bits (235), Expect = 3.800e-19
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  116 HVVRLYP*NGLPSCHP-LLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKASKKP 373
            +++R  P N   S +  LL+      A AGYTAFSVG+ NN++V IPI  +V  SPR MDPHG+TWERV+S T QPNTVPPKA K+P
Sbjct:  214 YMIRSVPANAADSIYTELLAQNVVHGAMAGYTAFSVGMRNNRLVYIPIGAMVKNSPRQMDPHGQTWERVISVTRQPNTVPPKAKKEP 300          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A8J6CDG3_DIALT (PFK domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDG3_DIALT)

HSP 1 Score: 95.1 bits (235), Expect = 2.490e-18
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  116 HVVRLYP*NGLPSCHP-LLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKASKKP 373
            +++R  P N   S +  LL+      A AGYTAFSVG+ NN++V IPI  +V  SPR MDPHG+TWERV+S T QPNTVPPKA K+P
Sbjct:  466 YMIRSVPANAADSIYTELLAQNVVHGAMAGYTAFSVGMRNNRLVYIPIGAMVKNSPRQMDPHGQTWERVISVTRQPNTVPPKAKKEP 552          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S1D0X5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0X5_CYCTE)

HSP 1 Score: 92.8 bits (229), Expect = 4.630e-18
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  116 HVVRLYP*NGLPS--CHPLLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPK 358
            ++VR  P N   S  C  L      G + AGYT FSVGL NN+MVL+PI ELV+TSPR M+P GRTWERVL+ T QPNTVPPK
Sbjct:  249 YMVRSIPANAADSLYCMQLAQNAVHG-SMAGYTGFSVGLCNNRMVLLPIPELVSTSPRSMNPRGRTWERVLAVTRQPNTVPPK 330          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S0AV74_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AV74_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.360e-17
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  116 HVVRLYP*NGLPS--CHPLLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPP 355
            +++R  P N   S  C  L      G A AG+T FSVGL NNKMV +PI ELV TSPR M+P GRTWERVL+ T QPNTVPP
Sbjct:  125 YMIRSVPANASDSLYCMQLAQNAVHG-AMAGFTGFSVGLCNNKMVFLPIPELVETSPRSMNPRGRTWERVLARTRQPNTVPP 205          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S1Z5G9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5G9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.590e-17
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 2
Query:  191 AQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPP 355
            A AG+T FSVGL NNKMV +PI ELV+TSPR M P GRTWER+L+ T QPNTVPP
Sbjct:  191 AMAGFTGFSVGLCNNKMVFLPIPELVSTSPRMMSPRGRTWERILAVTRQPNTVPP 245          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S1BFV1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFV1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.570e-17
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  116 HVVRLYP*NGLPS--CHPLLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKASKKPKI 379
            ++VR  P N   S  C  L      G A AGYT FSVGL NN+MV +PI +LV +SPR M+ +GRTWERVL  T QPNTVPPK   +P I
Sbjct:  142 YMVRSVPANAADSQYCMQLAQNAVHG-AMAGYTGFSVGLCNNRMVYLPIPKLVESSPRKMNAYGRTWERVLQVTRQPNTVPPKDGDEPDI 230          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S3XU18_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU18_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 7.260e-17
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  116 HVVRLYP*NGLPSCH-PLLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKA 361
            +++R  P N   S +  LLS      A AGYTAFSVGLVNN+MV IP+  L   SPR M PHGRTWERVLS T QPNTVPP A
Sbjct:  487 YMIRSVPANSTDSLYCTLLSQNAVHGAMAGYTAFSVGLVNNRMVWIPMPILTDNSPRVMAPHGRTWERVLSATHQPNTVPPDA 569          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S4IZU6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZU6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.730e-17
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  191 AQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKASKK 370
            A AG T FSVGLVNN++V +PI +LVATSPR M PHG TWER+++ T QPNT PPK   +
Sbjct:   51 AMAGLTGFSVGLVNNRIVYLPIPQLVATSPRTMSPHGTTWERIVAMTGQPNTAPPKVEAR 110          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7R9ZCU7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCU7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.020e-16
Identity = 50/96 (52.08%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  116 HVVRLYP*NGLPS--CHPLLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKASKKPKI*SVRRE 397
            + VR  P NG  S  C  L      G A AG T FSVGLVNN +V +PI +LVATSPR MDPHG TWER+++ T QPNT  PK     K  S  +E
Sbjct:  104 YTVRSVPANGADSLYCMQLAQNAVHG-AMAGMTGFSVGLVNNCIVYLPIPQLVATSPRTMDPHGMTWERIVAMTGQPNTASPKEDDDDKEGSAEKE 198          
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Match: A0A7S4MVW9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVW9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.030e-16
Identity = 47/87 (54.02%), Postives = 56/87 (64.37%), Query Frame = 2
Query:  116 HVVRLYP*NGLPS--CHPLLSLFHFGLAQAGYTAFSVGLVNNKMVLIPIMELVATSPRFMDPHGRTWERVLSTTLQPNTVPPKASKK 370
            + VR  P NG  S  C  L      G A AG T FSVGLVNN++V +PI +LVATSPR M PHG TWER+++ T QPNT PPK   +
Sbjct:  169 YTVRSVPANGADSLYCMQLAQNAVHG-AMAGLTGFSVGLVNNRIVYLPIPQLVATSPRTMSPHGTTWERIVAMTGQPNTAPPKVEAR 254          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6326.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UI75_DIALT3.800e-1956.32Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A8J6CDG3_DIALT2.490e-1856.32PFK domain-containing protein n=2 Tax=Diacronema l... [more]
A0A7S1D0X5_CYCTE4.630e-1860.24Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S0AV74_9STRA2.360e-1758.54Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1Z5G9_9STRA3.590e-1772.73Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1BFV1_9STRA6.570e-1754.44Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3XU18_HETAK7.260e-1760.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4IZU6_9STRA8.730e-1763.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9ZCU7_9STRA1.020e-1652.08Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4MVW9_9STRA1.030e-1654.02Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6326contigP-wetherbeei_contig6326:819..1679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size863
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionPhosphofructokinase
Ec32 orthologEc-12_002540.2
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.1627843-CDS-P-wetherbeei_contig6326:818..14211683186905.1627843-CDS-P-wetherbeei_contig6326:818..1421Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6326 819..1421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.1742313-UTR-P-wetherbeei_contig6326:1421..16791683186905.1742313-UTR-P-wetherbeei_contig6326:1421..1679Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6326 1422..1679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6326.1.1prot_P-wetherbeei_contig6326.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6326 819..1421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6326.1.1

>prot_P-wetherbeei_contig6326.1.1 ID=prot_P-wetherbeei_contig6326.1.1|Name=mRNA_P-wetherbeei_contig6326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
LVYVGSFVITFLLPHFKAARNCLTKELPLPLPLSALRLPCGPAVPVKWST
LLSSSLVVVSLWSGPGGLHRLQRGAGEQQDGANPHHGARGDIAALHGPPR
PHLGARPLHHATAQHRAAQGQQKAQDLIGPKREKQPPRFACLVEISSGKG
ACEGLRDALRSNGTVRRPGSLEPASDRIERAPLVCHPCFLSRRFTKKGWL
*
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mRNA from alignment at P-wetherbeei_contig6326:819..1679+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6326.1.1 ID=mRNA_P-wetherbeei_contig6326.1.1|Name=mRNA_P-wetherbeei_contig6326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig6326:819..1679+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGTCTATGTCGGCTCTTTTGTGATCACTTTCTTGCTTCCGCACTTTAA GGCAGCTCGAAACTGCTTGACTAAAGAGCTTCCCCTGCCTCTTCCGCTGT CCGCTTTGCGGCTGCCATGTGGTCCGGCTGTACCCGTGAAATGGTCTACC CTCTTGTCATCCTCTCTTGTCGTTGTTTCACTTTGGTCTGGCCCAGGCGG GCTACACCGCCTTCAGCGTGGGGCTGGTGAACAACAAGATGGTGCTAATC CCCATCATGGAGCTCGTGGCGACATCGCCGCGCTTCATGGACCCCCACGG CCGCACCTGGGAGCGCGTCCTCTCCACCACGCTACAGCCCAACACCGTGC CGCCCAAGGCCAGCAAAAAGCCCAAGATTTGATCGGTCCGAAGAGAGAGA AGCAGCCCCCAAGATTTGCTTGTCTAGTTGAGATTTCCTCTGGGAAGGGG GCCTGCGAAGGCTTGAGAGATGCCTTGCGGTCAAATGGGACAGTCAGAAG GCCGGGAAGCTTGGAACCGGCGAGCGACCGCATCGAACGCGCTCCGCTCG TTTGCCATCCTTGCTTTCTTTCGCGAAGGTTCACCAAGAAAGGTTGGTTG TAATACTTTGACCGCGTTGAACCGAGAACAGGCAGGCGAGTAGCGGCGGT CGCCGACTGGTGTGAGTGCACTTCTCTGTCGGAGCCTCAACGCCATTTTT TTCCTGAGAGCGGCGGGCAGAAAAGTCAGTCGGCTGCTCTGAAGAGCGCA CCGGCAGTGCGGCAAGGAACGGTCACAGCCGTTTTACATAATGTACTAGA AGGATGGAAACGAGGAAGCGATTATTTTCCTGGTTCAAAGCAAGTCAGTG CCCAATCTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6326:819..1679+

>mRNA_P-wetherbeei_contig6326.1.1 ID=mRNA_P-wetherbeei_contig6326.1.1|Name=mRNA_P-wetherbeei_contig6326.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig6326:819..1679+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGTCTATGTCGGCTCTTTTGTGATCACTTTCTTGCTTCCGCACTTTAA
GGCAGCTCGAAACTGCTTGACTAAAGAGCTTCCCCTGCCTCTTCCGCTGT
CCGCTTTGCGGCTGCCATGTGGTCCGGCTGTACCCGTGAAATGGTCTACC
CTCTTGTCATCCTCTCTTGTCGTTGTTTCACTTTGGTCTGGCCCAGGCGG
GCTACACCGCCTTCAGCGTGGGGCTGGTGAACAACAAGATGGTGCTAATC
CCCATCATGGAGCTCGTGGCGACATCGCCGCGCTTCATGGACCCCCACGG
CCGCACCTGGGAGCGCGTCCTCTCCACCACGCTACAGCCCAACACCGTGC
CGCCCAAGGCCAGCAAAAAGCCCAAGATTTGATCGGTCCGAAGAGAGAGA
AGCAGCCCCCAAGATTTGCTTGTCTAGTTGAGATTTCCTCTGGGAAGGGG
GCCTGCGAAGGCTTGAGAGATGCCTTGCGGTCAAATGGGACAGTCAGAAG
GCCGGGAAGCTTGGAACCGGCGAGCGACCGCATCGAACGCGCTCCGCTCG
TTTGCCATCCTTGCTTTCTTTCGCGAAGGTTCACCAAGAAAGGTTGGTTG
TAA
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