mRNA_P-wetherbeei_contig6324.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6324.5.1
Unique NamemRNA_P-wetherbeei_contig6324.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6324.5.1 vs. uniprot
Match: D7G5S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.480e-14
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 3 
Query:  315 ELACDISLHGCCCCDGPP---YSNHTAPACPEWT-VGEISDNAAAVLKLGAITVLLDVVFVLCSLVASLVLLDNLKGYQCEYL 551
             +AC++ +HGCCCC   P   +S +T P CPEW+   E++  A   +KLG +T ++ VVFVLC L AS++  +NLKGYQ +Y+
Sbjct:  107 RIACEVGVHGCCCCRYTPELDFSLYTVPGCPEWSDPKELAQVAIVFVKLGLLTSVMSVVFVLCGLWASVMFHNNLKGYQVDYI 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6324.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5S4_ECTSI5.480e-1445.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6324contigP-wetherbeei_contig6324:2073..3053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size981
Hectar predicted targeting categoryother localisation
Exons1
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186904.9945955-UTR-P-wetherbeei_contig6324:2072..24991683186904.9945955-UTR-P-wetherbeei_contig6324:2072..2499Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6324 2073..2499 -
1683186905.0132644-UTR-P-wetherbeei_contig6324:2997..30531683186905.0132644-UTR-P-wetherbeei_contig6324:2997..3053Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6324 2998..3053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.0040817-CDS-P-wetherbeei_contig6324:2499..29971683186905.0040817-CDS-P-wetherbeei_contig6324:2499..2997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6324 2500..2997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6324.5.1prot_P-wetherbeei_contig6324.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6324 2500..2997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6324.5.1

>prot_P-wetherbeei_contig6324.5.1 ID=prot_P-wetherbeei_contig6324.5.1|Name=mRNA_P-wetherbeei_contig6324.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MRWRRQEQRKVELVARRGEGPLRESNFAVMQGYVFAASEWYCCPHPPAAL
IRLCLLESPDVLFNLPGYLNLHILKPTLLAGAIQTWELACDISLHGCCCC
DGPPYSNHTAPACPEWTVGEISDNAAAVLKLGAITVLLDVVFVLCSLVAS
LVLLDNLKGYQCEYL*
back to top

mRNA from alignment at P-wetherbeei_contig6324:2073..3053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6324.5.1 ID=mRNA_P-wetherbeei_contig6324.5.1|Name=mRNA_P-wetherbeei_contig6324.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig6324:2073..3053- (Phaeothamnion wetherbeei SAG_119_79)
CTCGGCCAGGAGCTCAACGGGTACAGTGACCAGCAGGTGCGACGGCGGCC
AGTGCGATGCGGTGGAGGCGACAGGAACAGAGAAAAGTGGAGCTGGTCGC
GCGGAGAGGGGAAGGGCCGCTGCGGGAAAGCAACTTTGCGGTCATGCAGG
GTTATGTCTTTGCAGCCAGTGAATGGTACTGCTGCCCGCACCCTCCTGCA
GCATTAATCAGACTTTGTTTGTTAGAGTCGCCGGACGTTCTGTTTAACCT
TCCCGGTTATTTAAACCTACACATTTTGAAACCAACGCTTCTGGCTGGTG
CCATACAGACGTGGGAGCTGGCCTGCGACATCAGCCTGCACGGCTGCTGC
TGCTGCGACGGGCCGCCCTACTCCAACCACACTGCGCCGGCCTGCCCGGA
GTGGACCGTTGGCGAGATCTCCGACAACGCTGCCGCTGTCCTGAAGCTGG
GCGCCATCACGGTGCTTTTGGACGTCGTGTTCGTGCTTTGCAGCCTCGTC
GCCAGCCTCGTGCTGCTCGACAACCTGAAGGGTTACCAGTGCGAGTATCT
TTAGTGCAGGAGTGATGGTTTCGCAGGTAACGGTTGCTGATAGTGGTTAG
TCAGGTGCGTCTGCTGGCTGTATTTGCCCATCGGCGGTCAGTTGGCTGGC
CGGCTCTCTCAGGGTGGGAGGCGACGTAAAGGGCGCTTGGAGGGGGCCGG
GTCGCCGACCGGCGTGAGCGAGAGGATGTTCTGGCGGGCACACAAGTTTT
GGGCTTGCGGACGATGTGCCCCGGTCGCTGTCAATGAGGCGGGCGCAGCC
GCCGTGCCGTTCGGCCGGAAAAGAAGGAAGGGGCGCGGCGCCGTTCCGAG
GGGGGCGAAGATCGTTTTCAAGGACCAGCGTGGCGCCGCCTTTTTGTCTA
TAGCTGTAAAAACATGGCAAGGTAAAGTTACCAGCTTCCAGTTCTCATCG
CAGACACATAATAGAGAGACAAACACATGAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6324:2073..3053-

>mRNA_P-wetherbeei_contig6324.5.1 ID=mRNA_P-wetherbeei_contig6324.5.1|Name=mRNA_P-wetherbeei_contig6324.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig6324:2073..3053- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTGGAGGCGACAGGAACAGAGAAAAGTGGAGCTGGTCGCGCGGAG
AGGGGAAGGGCCGCTGCGGGAAAGCAACTTTGCGGTCATGCAGGGTTATG
TCTTTGCAGCCAGTGAATGGTACTGCTGCCCGCACCCTCCTGCAGCATTA
ATCAGACTTTGTTTGTTAGAGTCGCCGGACGTTCTGTTTAACCTTCCCGG
TTATTTAAACCTACACATTTTGAAACCAACGCTTCTGGCTGGTGCCATAC
AGACGTGGGAGCTGGCCTGCGACATCAGCCTGCACGGCTGCTGCTGCTGC
GACGGGCCGCCCTACTCCAACCACACTGCGCCGGCCTGCCCGGAGTGGAC
CGTTGGCGAGATCTCCGACAACGCTGCCGCTGTCCTGAAGCTGGGCGCCA
TCACGGTGCTTTTGGACGTCGTGTTCGTGCTTTGCAGCCTCGTCGCCAGC
CTCGTGCTGCTCGACAACCTGAAGGGTTACCAGTGCGAGTATCTTTAG
back to top