mRNA_P-wetherbeei_contig6324.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6324.2.1
Unique NamemRNA_P-wetherbeei_contig6324.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6324.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6324contigP-wetherbeei_contig6324:24..2064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2041
Hectar predicted targeting categoryother localisation
Exons1
Cds size1374
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186904.9363375-UTR-P-wetherbeei_contig6324:23..3591683186904.9363375-UTR-P-wetherbeei_contig6324:23..359Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6324 24..359 +
1683186904.967406-UTR-P-wetherbeei_contig6324:1733..20641683186904.967406-UTR-P-wetherbeei_contig6324:1733..2064Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6324 1734..2064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186904.9506764-CDS-P-wetherbeei_contig6324:359..17331683186904.9506764-CDS-P-wetherbeei_contig6324:359..1733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6324 360..1733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6324.2.1prot_P-wetherbeei_contig6324.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6324 360..1733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6324.2.1

>prot_P-wetherbeei_contig6324.2.1 ID=prot_P-wetherbeei_contig6324.2.1|Name=mRNA_P-wetherbeei_contig6324.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=458bp
MGPIIPGPNGTFDNIDRSGGAVRPGAVGLVSGCVLLRGHMTYIFLGVFMT
GNERWIAVEEVDDGAGVAAAAAGGEPSSDDSGARRRRRRGTGRVWQLKWS
DVSNIVRVVSYAPDIADVRDCVAAAADYVARNISTRDLRNLLARFTTSAA
AAGGGGGTDSGGGVGCGGGGSSSRHHDAWDGDDVAAVGGGGGSSESDAEE
TAGYDVTYGDVGHYASGFVGVGSGGSGCGRGTPRGTPRSAGGSGGGGGGG
ASDRTSSWTGPLLAAGGWVALPPPPSSEEEECDEESGCDDSDGGGGGATY
GGGDGRGACRSTGAVDGGGGGGGRRSGCRKNKKRRRQQHPQCADQQFVPF
SGDLGRVGLRWGGTLQVVETNGGTLAVVAAAPLSDDTSALATACSATSSS
ALKSMPAAASAVPAATAAGTVYLGGDEGGVGEAGAAGQQPSWTHWGGGGG
GGVTAGA*
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mRNA from alignment at P-wetherbeei_contig6324:24..2064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6324.2.1 ID=mRNA_P-wetherbeei_contig6324.2.1|Name=mRNA_P-wetherbeei_contig6324.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2041bp|location=Sequence derived from alignment at P-wetherbeei_contig6324:24..2064+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGTGCCGTGACCCTTGCCGCAGCTAACCGCCGCGTCGACTCCTTCCC
GGACGACATCAGCGACGACGGCGCGGCCAACGTCAGCTTCCGAGGCGAGC
GGCGCGCGCAGATCTCGGCGGACGGCCCGCTCGGCTCCGACCCGGTGGCG
CGGCAGCTGTCGCGGATCCGCTGGCCGCTGGCGCGAGACCGCGGCTTCGC
GCTCTACGGCCAGCCGCTCGTCTACGTCGGCGGCCAGTCCCGCCTGGCGT
TCGCCTTCCTGAACGAGCCGCACGAGTGGGTGTCGCCGGTGCTCATCGAC
ACACGCATCAACGGCACGCCGCTACCGCCGGGCAGCATGGGCCCCATCAT
CCCCGGCCCCAACGGCACCTTCGATAACATCGACCGCTCCGGCGGCGCCG
TGCGCCCCGGCGCGGTTGGGCTGGTATCGGGCTGTGTGCTGTTGCGTGGC
CACATGACGTATATTTTTCTGGGGGTGTTTATGACGGGCAACGAGCGATG
GATCGCCGTCGAGGAGGTGGACGACGGGGCGGGGGTGGCGGCAGCGGCTG
CCGGGGGAGAGCCGTCGTCTGACGACAGCGGCGCGCGGCGGCGGCGGCGG
CGGGGCACAGGGCGGGTGTGGCAGCTCAAGTGGTCGGACGTTTCGAACAT
CGTCCGGGTCGTGTCCTACGCGCCGGACATCGCGGACGTGCGGGACTGCG
TCGCCGCCGCCGCCGACTACGTTGCACGGAACATTTCGACGCGCGACCTG
CGAAACCTGCTGGCGCGCTTCACGACGTCCGCTGCAGCGGCTGGCGGAGG
CGGTGGTACCGACAGCGGCGGTGGCGTCGGTTGCGGAGGCGGCGGGTCGT
CGTCGCGGCACCACGACGCCTGGGACGGCGACGACGTCGCCGCTGTTGGC
GGCGGCGGCGGCAGCAGCGAGAGTGACGCGGAGGAGACCGCCGGCTACGA
CGTCACCTACGGTGACGTCGGCCACTACGCCTCCGGCTTTGTCGGCGTCG
GAAGCGGCGGCAGCGGCTGCGGCCGCGGTACCCCCCGCGGAACCCCTCGC
AGTGCCGGCGGCAGCGGCGGCGGTGGTGGGGGCGGCGCCAGTGATCGGAC
GAGCTCGTGGACCGGGCCGCTGCTTGCCGCTGGCGGGTGGGTGGCACTGC
CGCCGCCACCGTCTTCCGAGGAGGAAGAGTGTGATGAGGAAAGCGGCTGC
GATGACAGCGACGGCGGCGGCGGCGGTGCTACTTACGGCGGCGGCGACGG
CCGCGGTGCCTGCCGTAGCACTGGGGCGGTTGATGGAGGCGGCGGTGGCG
GCGGCAGAAGGAGCGGCTGCCGCAAGAACAAGAAACGACGGCGGCAGCAG
CACCCGCAGTGCGCCGACCAGCAGTTCGTGCCGTTTTCCGGCGATCTCGG
CCGGGTGGGCCTGCGATGGGGCGGGACGCTGCAGGTGGTCGAGACCAACG
GCGGCACCCTCGCGGTGGTCGCGGCGGCACCGCTCAGCGATGACACGTCG
GCGCTCGCCACCGCCTGCTCTGCAACGTCGTCGTCGGCGCTGAAGTCGAT
GCCGGCTGCAGCGAGTGCCGTCCCGGCCGCCACCGCTGCCGGCACCGTGT
ACCTCGGCGGAGACGAAGGTGGTGTTGGAGAGGCGGGTGCGGCAGGCCAG
CAGCCGTCTTGGACGCACTGGGGAGGCGGCGGTGGCGGCGGCGTGACGGC
AGGCGCGTGAGGGCCGAGCTACCAGGCAAACTTCGGTGCGGTGCGTTGCA
GAATATTTTGTGGCTCTCAGTCATTCATGGCGATGCCACAAGACGTCACG
AAACTGCAGCAGCTTGGATATAAAGGTGCCGGTGTAGAGGGCAGAAGCGG
ACGGCAGAGACGCGGTTGGTAATTGGGAAGGAAGCAAAAGGAACGGGTGC
TGTTGGGACAAGAACTGACAGGGAGTCAATGGTCAGGAGAGCCCGAACGT
GTGAGGGGATTCGAGAATGCGCGATTCAAAAACAGCGGAACAGCCAAATA
GAGCAAGAGAAACGAACTAACGTGATGAAAGAGAAAATAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6324:24..2064+

>mRNA_P-wetherbeei_contig6324.2.1 ID=mRNA_P-wetherbeei_contig6324.2.1|Name=mRNA_P-wetherbeei_contig6324.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1374bp|location=Sequence derived from alignment at P-wetherbeei_contig6324:24..2064+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCCCATCATCCCCGGCCCCAACGGCACCTTCGATAACATCGACCG
CTCCGGCGGCGCCGTGCGCCCCGGCGCGGTTGGGCTGGTATCGGGCTGTG
TGCTGTTGCGTGGCCACATGACGTATATTTTTCTGGGGGTGTTTATGACG
GGCAACGAGCGATGGATCGCCGTCGAGGAGGTGGACGACGGGGCGGGGGT
GGCGGCAGCGGCTGCCGGGGGAGAGCCGTCGTCTGACGACAGCGGCGCGC
GGCGGCGGCGGCGGCGGGGCACAGGGCGGGTGTGGCAGCTCAAGTGGTCG
GACGTTTCGAACATCGTCCGGGTCGTGTCCTACGCGCCGGACATCGCGGA
CGTGCGGGACTGCGTCGCCGCCGCCGCCGACTACGTTGCACGGAACATTT
CGACGCGCGACCTGCGAAACCTGCTGGCGCGCTTCACGACGTCCGCTGCA
GCGGCTGGCGGAGGCGGTGGTACCGACAGCGGCGGTGGCGTCGGTTGCGG
AGGCGGCGGGTCGTCGTCGCGGCACCACGACGCCTGGGACGGCGACGACG
TCGCCGCTGTTGGCGGCGGCGGCGGCAGCAGCGAGAGTGACGCGGAGGAG
ACCGCCGGCTACGACGTCACCTACGGTGACGTCGGCCACTACGCCTCCGG
CTTTGTCGGCGTCGGAAGCGGCGGCAGCGGCTGCGGCCGCGGTACCCCCC
GCGGAACCCCTCGCAGTGCCGGCGGCAGCGGCGGCGGTGGTGGGGGCGGC
GCCAGTGATCGGACGAGCTCGTGGACCGGGCCGCTGCTTGCCGCTGGCGG
GTGGGTGGCACTGCCGCCGCCACCGTCTTCCGAGGAGGAAGAGTGTGATG
AGGAAAGCGGCTGCGATGACAGCGACGGCGGCGGCGGCGGTGCTACTTAC
GGCGGCGGCGACGGCCGCGGTGCCTGCCGTAGCACTGGGGCGGTTGATGG
AGGCGGCGGTGGCGGCGGCAGAAGGAGCGGCTGCCGCAAGAACAAGAAAC
GACGGCGGCAGCAGCACCCGCAGTGCGCCGACCAGCAGTTCGTGCCGTTT
TCCGGCGATCTCGGCCGGGTGGGCCTGCGATGGGGCGGGACGCTGCAGGT
GGTCGAGACCAACGGCGGCACCCTCGCGGTGGTCGCGGCGGCACCGCTCA
GCGATGACACGTCGGCGCTCGCCACCGCCTGCTCTGCAACGTCGTCGTCG
GCGCTGAAGTCGATGCCGGCTGCAGCGAGTGCCGTCCCGGCCGCCACCGC
TGCCGGCACCGTGTACCTCGGCGGAGACGAAGGTGGTGTTGGAGAGGCGG
GTGCGGCAGGCCAGCAGCCGTCTTGGACGCACTGGGGAGGCGGCGGTGGC
GGCGGCGTGACGGCAGGCGCGTGA
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