mRNA_P-wetherbeei_contig629.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig629.1.4
Unique NamemRNA_P-wetherbeei_contig629.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: D7FTS8_ECTSI (SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS8_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.240e-37
Identity = 117/350 (33.43%), Postives = 175/350 (50.00%), Query Frame = 1
Query:  625 MSEDPLIIRSTASNRTFYVDPHDNGKRCHFGGKVFRCCECWELENAGQQPPHASTATIMITINTPSGHVFGYDAAGATFALKAIPKEKIVQAATAQGREVGNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNK--QPFDAAAADLFSCGAVAYMSLLGFMPWTQV---NDELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPFFAA 1647
            M  +   +RS A+ R +      + + C FG +V R  E  + E A   P +                          FA+K +  +K+        REV     EDP RE+A+LQ+ ++   HP+V    EAL D   ++ VTP+      GE FDA+     +EE EAR     VL A+  L   G+CHRD+SLEN LL   D+G+ +V++VDFG+A+ IP  P+ G R  ++ PQG  GK   +APE+  +     FD  A D+++CG + ++ L G  P+       D+   ++A   RL + L+AWG +  +S  A  L+QS L   PA R  +E +LRHP+  A
Sbjct:   84 MENESYTLRSQATGRRWRAV--SSSRECQFG-EVLRAVEVTDEEAAASSPAY--------------------------FAIKELNLDKL--------REVQGRTYEDPLREVAALQFLSS---HPNVLPCTEALWDSDSIYIVTPFYSG---GEVFDALTDRGRYEEGEARPLFRQVLHALRHLKIHGVCHRDVSLENLLL---DEGN-TVKLVDFGLALRIPQKPDGGAR--VLLPQGPCGKPFYIAPEVLSSSVSSGFDGFAVDVWACGVLLFVMLTGVPPFEMALPSQDQRCQIVAVEERLVDLLSAWGIS--LSPEAAGLIQSCLRHSPAERPSVENLLRHPWMKA 382          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: A0A7S4ABH0_9STRA (Hypothetical protein n=3 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABH0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.450e-35
Identity = 92/243 (37.86%), Postives = 139/243 (57.20%), Query Frame = 1
Query:  940 EDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHEL-GEAFDAVPFEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDG-------GRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPW--TQVNDELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPF 1638
            EDP++E+A++Q+ +  G HPHV   ++ L+D+ YL    P+C S +L G    A  F E+ AR +   +L  ++ L   GICHRD+SLEN L+   D+ +RSV V+D GM + +P D   G       G   L+ P    GK + ++PEI  + +PFD  A DL++ G   ++ L+G  PW   + +D  +V++ R + L+  L +W R   VS  A  LLQ ML+E+P  RL L EV  HP+
Sbjct:  127 EDPYKEVAAMQFMSRGGMHPHVMGALDVLQDDDYLILFMPYCTSGDLFGFVKQATRFPENMARYWFAQILDGLSHLQRMGICHRDMSLENILV---DEYTRSV-VIDLGMCLRVPYDNGKGIGDVTAGGLRRLMKPLIPCGKPNYISPEILASNKPFDGFAIDLWATGVTLFIMLVGLPPWEFARPDDPRYVMVTRGK-LSRMLESWKRP--VSELAADLLQKMLMEDPRQRLSLSEVKDHPW 362          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: A0A397DIW4_9STRA (Protein kinase domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DIW4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.890e-35
Identity = 94/244 (38.52%), Postives = 144/244 (59.02%), Query Frame = 1
Query:  925 GNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVND--ELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPF 1638
            GN++ E+P  ELA+ Q+ +  G HPH+E     L D  +++ V P+C     GE F  V      +E E RR+   VL  VA+L  R ICHRD+SLEN LL    DG+ S +++DFG+ +GIP+D    G    + P G+VGK   M PEIY N+ PF+  AAD++S G + ++ + G  P+ + +D    F +IA  R + E L +WG   V SA    L + ++V++P+ RL L+++++HP+
Sbjct:  157 GNLQ-ENPLVELATQQYLSTPG-HPHIE----CLHDPEFIYAVLPFCRG---GELFSLVETGGAMDEGECRRWFTQVLRGVAYLQSRYICHRDMSLENVLL----DGNTS-KIIDFGLCVGIPVDAN--GMTYALPPSGAVGKIFYMPPEIYRNQVPFNGFAADIWSMGVMLFIMVTGAPPFERPDDMDPRFQMIATGR-MNEMLDSWGMTHVSSAVRDLLNRLLVVQDPSRRLSLDQIMQHPW 383          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: T0Q384_SAPDV (CAMK protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q384_SAPDV)

HSP 1 Score: 147 bits (372), Expect = 3.320e-35
Identity = 104/312 (33.33%), Postives = 167/312 (53.53%), Query Frame = 1
Query:  721 KVFRCCECWELENAGQQPPHASTATIMITINTPSGHVFGYDAAGATFALKAIPKEKIVQAATAQGREVGNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVND--ELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPF 1638
            +  R C   ++++A +  PH + + + +  N                A+K + K  I Q         GN++ E+P  ELA+ Q+ +  G HP+V  L+E L D  +++ V P+C+    GE F  V      +E E R +   VL+ +++L  R ICHRD+SLEN LL    DGS S +++DFG+ IGIP+D +  G    + P G+VGK   M PEIY N+ PF+  AAD++S G + ++ + G  P+ + +D    F +IA  R L E L +WG   V  +    L + ++V +P  RL +E++ +HP+
Sbjct:   76 RTLRKCIYGKVKHAVELTPHPNGSGVFVRTNL-------------EVAIKVMSKAIIEQ---------GNLQ-ENPMVELATQQYLSTPG-HPNVLPLLECLHDPEFIYAVLPFCKG---GELFSLVESGGAMDEGECRHWFAQVLNGLSYLQHRLICHRDMSLENVLL----DGSIS-KIIDFGLCIGIPVDAQ--GMTYSLPPAGAVGKIFYMPPEIYRNQVPFNGFAADIWSTGVMLFIMVTGAPPFERPDDVDPRFQMIATGR-LNEMLDSWGMHHVSRSVRDLLNKMLVVHDPRQRLTVEQIAQHPW 352          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: A0A7S2UUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUC5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.690e-35
Identity = 90/264 (34.09%), Postives = 144/264 (54.55%), Query Frame = 1
Query:  916 REVGNMRG---EDPFRELASLQWANA-----------------DGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVPFEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVN--DELFVVIARRRRLAEQLAAWGRADV-VSAAAVSLLQSMLVEEPAHRLGLEEVLRHPF 1638
            R++  +RG   EDP +E+A++Q+ +                   GGHP+V  L+E ++DE  ++ V P+C +           F ED AR++  ++L    +LH RG+CHRD+SLEN L+        +  ++D GM + +P+D +  G+  LI+PQG  GK + M+PEI+ NK+PF   A D ++CG + ++ L G  P+      D  F +I+  R L+E L+ W   ++ +S  AV LL  ML   P  RL  EE++ HP+
Sbjct:   91 RKIQELRGRHNEDPIKEIAAMQFLSTAPEGVEGTKQGEGESTHQGGHPNVLPLLECVQDEDLVYCVMPYCGAELFSFVEQQGAFLEDRARQYFREILCGTNYLHSRGVCHRDLSLENVLVS-----QNTCIIIDMGMCLRMPVD-QTTGKHLLINPQGQCGKRNYMSPEIFLNKRPFSGEAIDFWACGIILFIMLTGVPPFETATEVDPRFQMISSWR-LSEMLSLW---EINLSPEAVDLLSRMLRPNPQERLKYEEIMAHPW 344          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: K3X6J5_GLOUD (Protein kinase domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3X6J5_GLOUD)

HSP 1 Score: 145 bits (366), Expect = 2.000e-34
Identity = 91/250 (36.40%), Postives = 147/250 (58.80%), Query Frame = 1
Query:  919 EVGNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVNDE--LFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPFFAAG 1650
            E GN++ E+P  ELA+ Q+ +  G H +V  L+E L D  +++ V P+C     GE F  V      +E E R +   VL+ +++L  R ICHRD+SLEN LL    DG  S +++DFG++IGIP+D    G    + P G+VGK   M PEIY N+ PF+  +AD++S G + ++ + G  P+ + +D    F +IA+ R L+E L +WG   V  +    +++ ++V++P+ RL +E++  HP+   G
Sbjct:  119 EEGNLQ-ENPLVELAAQQYLSHPG-HENVLTLIECLHDADFIYAVLPFCNG---GELFSVVESGGAMDERECRHWFTQVLAGLSYLQSRYICHRDMSLENVLL----DGDIS-KIIDFGLSIGIPVDSH--GMTYSLPPAGAVGKIFYMPPEIYRNQVPFNGFSADIWSTGVMLFIMVTGAPPFERPDDADPRFQMIAKGR-LSEMLDSWGMHHVSGSVRDLMMKMLIVDDPSRRLTVEQIAMHPWIRGG 355          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: A0A8K1FIF3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIF3_PYTOL)

HSP 1 Score: 145 bits (366), Expect = 2.180e-34
Identity = 92/250 (36.80%), Postives = 147/250 (58.80%), Query Frame = 1
Query:  919 EVGNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVNDE--LFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPFFAAG 1650
            E GN++ E+P  ELA+ Q  +A G H +V  L+E L D  Y++ V P+C+    GE F  V      +E + R +   VL+ +++L  R ICHRD+SLEN LL    DG+ S +++DFG+AIGIP+D    G    + P G+VGK   M PEIY N+ PF+  +AD++S G + ++ + G  P+ + +D    F +IA+ R L++ L +WG   +  +    L + ++V+EP  RL + ++ +HP+   G
Sbjct:  123 EEGNLQ-ENPLVELATQQHLSAPG-HENVLLLIECLHDSEYIYAVLPFCDG---GELFSLVESGGAMDETQCRHWFAQVLAGLSYLQSRYICHRDMSLENVLL----DGNIS-KIIDFGLAIGIPVDSH--GMTYSLPPAGAVGKIFYMPPEIYRNQVPFNGFSADIWSTGVMLFIMVTGAPPFERPDDADPRFQMIAKGR-LSDMLDSWGMFHISPSVRDLLSRMLIVDEPTARLTVNQIAQHPWLHGG 359          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: A0A6G0XBG7_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBG7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.530e-34
Identity = 90/244 (36.89%), Postives = 142/244 (58.20%), Query Frame = 1
Query:  925 GNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVND--ELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPF 1638
            GN++ E+P  ELA+ Q+ +  G HP+V  L+E L D  +++ + P+C     GE F  V      +EDE R +   V+  +++L  R +CHRD+SLEN LL    DG+ S +++DFG+ IG+P+D    G    + P G+VGK   M PEIY N+ PF+  AAD++S G + ++ + G  P+ + +D    F ++A  R + E L +WG   V SA    L   ++V +P  RL LE++ +HP+
Sbjct:  131 GNLQ-ENPLVELATQQYLSTPG-HPNVLTLIECLHDPEFIYAILPFCRG---GELFSLVETGGALDEDECRYWFNQVVRGLSYLQSRYVCHRDMSLENVLL----DGNVS-KIIDFGLCIGVPVDAN--GMTYSLPPSGAVGKIFYMPPEIYRNQVPFNGFAADIWSTGVMLFIMVTGAPPFERPDDMDPRFQMVATGR-MNEMLDSWGMTHVSSAVRDLLNGLLVVHDPRQRLTLEQITQHPW 361          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: A0A418B2B9_9STRA (Protein kinase domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A418B2B9_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.540e-34
Identity = 97/266 (36.47%), Postives = 146/266 (54.89%), Query Frame = 1
Query:  919 EVGNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPE--------------------IYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVND--ELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEEPAHRLGLEEVLRHPF 1638
            E GN++ E+P  ELA+ Q+ +  G HPHV  LVE L D  +++ V P+C     GE F  V      +EDE R + G VL  VA+L  R ICHRD+SLEN LL    DG+ S +++DFG+ +GIP+D    G    + P G+VGK   M PE                    IY N+ PF+  AAD++S G + ++ + G  P+ + +D    F +IA  R + E L +WG   V  +    L + ++V++P  RL L+++++HP+
Sbjct:  156 EQGNLQ-ENPLVELATQQYLSTPG-HPHVLTLVECLHDPEFIYAVLPFCRG---GELFSLVETGGAMDEDECRHWFGQVLRGVAYLQSRYICHRDMSLENVLL----DGNTS-KIIDFGLCVGIPVDAN--GMTYALPPSGAVGKIFYMPPEVRHALYLCVLSACMIHAMDKIYRNQVPFNGFAADIWSMGVMLFIMITGAPPFERPDDMDPRFQMIATGR-MNEMLDSWGMTQVSPSVRDLLNRLLVVQDPRRRLTLDQIMQHPW 408          
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Match: G4YYI2_PHYSP (Protein kinase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YYI2_PHYSP)

HSP 1 Score: 145 bits (365), Expect = 1.180e-33
Identity = 96/251 (38.25%), Postives = 148/251 (58.96%), Query Frame = 1
Query:  919 EVGNMRGEDPFRELASLQWANADGGHPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVP----FEEDEARRFLGDVLSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPEDGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLLGFMPWTQVNDE--LFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSML-VEEPAHRLGLEEVLRHPFFAAG 1650
            E GN++ E+P  ELA+ Q+ +  G H +V  L+E L D  +++ V P+C     GE F  V      EE E R +   VL+ +++L  R ICHRD+SLEN LL    DG  S +++DFG++IGIP+D    G    + P G+VGK   M PEIY N+ PF+  +AD++S G + ++ + G  P+ + +D    F +IA+   +++ L +WG  D VSA+   LL  ML V++P+ RL +E++  HP+   G
Sbjct:  193 EEGNLQ-ENPLVELAAQQYLSVPG-HENVLTLIECLHDADFIYAVLPFCNG---GELFSVVESGGAMEEAECRHWFTQVLAGLSYLQSRYICHRDMSLENVLL----DGDTS-KIIDFGLSIGIPVDAH--GMTYSLPPAGAVGKIFYMPPEIYRNQVPFNGFSADIWSTGVMLFIMVTGAPPFERPDDADPRFQMIAQGL-MSDMLDSWGM-DHVSASVRDLLSKMLIVDDPSRRLTVEQIAMHPWIQGG 429          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig629.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTS8_ECTSI3.240e-3733.43SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ecto... [more]
A0A7S4ABH0_9STRA1.450e-3537.86Hypothetical protein n=3 Tax=Pseudo-nitzschia aust... [more]
A0A397DIW4_9STRA1.890e-3538.52Protein kinase domain-containing protein n=4 Tax=A... [more]
T0Q384_SAPDV3.320e-3533.33CAMK protein kinase n=3 Tax=Saprolegniaceae TaxID=... [more]
A0A7S2UUC5_9STRA3.690e-3534.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3X6J5_GLOUD2.000e-3436.40Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A8K1FIF3_PYTOL2.180e-3436.80Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XBG7_9STRA2.530e-3436.89Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A418B2B9_9STRA3.540e-3436.47Protein kinase domain-containing protein n=3 Tax=A... [more]
G4YYI2_PHYSP1.180e-3338.25Protein kinase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig629contigP-wetherbeei_contig629:15..3216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008870970.1
PFAMsPkinase
Model size2453
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.91e-40
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
EC2.8.1.8
Descriptionprotein serine/threonine kinase activity
Cds size1698
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig629.1.4prot_P-wetherbeei_contig629.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig629 558..3004 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.644121-UTR-P-wetherbeei_contig629:14..5571683186902.644121-UTR-P-wetherbeei_contig629:14..557Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig629 15..557 +
1683186902.6871955-UTR-P-wetherbeei_contig629:3004..32161683186902.6871955-UTR-P-wetherbeei_contig629:3004..3216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig629 3005..3216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.6536248-CDS-P-wetherbeei_contig629:557..10861683186902.6536248-CDS-P-wetherbeei_contig629:557..1086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig629 558..1086 +
1683186902.6617641-CDS-P-wetherbeei_contig629:1338..14531683186902.6617641-CDS-P-wetherbeei_contig629:1338..1453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig629 1339..1453 +
1683186902.6694415-CDS-P-wetherbeei_contig629:1729..19021683186902.6694415-CDS-P-wetherbeei_contig629:1729..1902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig629 1730..1902 +
1683186902.6789956-CDS-P-wetherbeei_contig629:2123..30041683186902.6789956-CDS-P-wetherbeei_contig629:2123..3004Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig629 2124..3004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig629.1.4

>prot_P-wetherbeei_contig629.1.4 ID=prot_P-wetherbeei_contig629.1.4|Name=mRNA_P-wetherbeei_contig629.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=566bp
MATTTRRRRRVSAPAAFPQAKTSPCTRMSEDPLIIRSTASNRTFYVDPHD
NGKRCHFGGKVFRCCECWELENAGQQPPHASTATIMITINTPSGHVFGYD
AAGATFALKAIPKEKIVQAATAQGREVGNMRGEDPFRELASLQWANADGG
HPHVEELVEALEDELYLFKVTPWCESHELGEAFDAVPFEEDEARRFLGDV
LSAVAFLHERGICHRDISLENCLLEARDDGSRSVRVVDFGMAIGIPMDPE
DGGRPALISPQGSVGKASTMAPEIYHNKQPFDAAAADLFSCGAVAYMSLL
GFMPWTQVNDELFVVIARRRRLAEQLAAWGRADVVSAAAVSLLQSMLVEE
PAHRLGLEEVLRHPFFAAGAGGAAAMAGAAAAAAVDATAFTAAAEPAAMA
VAGAAATAASACAGATNAADVASAATVTAAVGGARGCAAAAECERGRDGD
GTRGAIAAAATCNDGGTAAGSASSVGGGTEYKEVRNDATAVVSLTTSEKA
GGGNGSAGNGHARGDAAAAVDSGAPRHAENDAAACFRGACNGCEPFCTNV
DGAHGSAGEGGWVVL*
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mRNA from alignment at P-wetherbeei_contig629:15..3216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig629.1.4 ID=mRNA_P-wetherbeei_contig629.1.4|Name=mRNA_P-wetherbeei_contig629.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3202bp|location=Sequence derived from alignment at P-wetherbeei_contig629:15..3216+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCCTCTCCGGTCCTTTCGACACGGTTCGACACTGTAACTTCCATCCCG CGGCTCCAACACATGTATGCTGCATGGTGTGAGTCTGTTATCGCATCATG ACGGTTTGGCATAGTTCGGATGTGTCTAGAAGCCCGGATTTCGTGTATTG ATGTTGTCGAAATGTATACTCAGTTGCAGTGAGGGGAAAGCACGACGCGC CGTTTGCGCGGCACGTGGCATCGGGCTTGTTTCCTCCATTATTCCGTTGT ACTTTTCCTTGAAGGAAGGGCAAGTCGGCACACTCTGACGTGTTGATCCA ATACATTTCCGTATCAGATTTTTCTATTAGTTCCACTTTGCATACCGCAC TTTCGCTTGGCCTACCTATGTGAGACACAAGACTCTCTCCCTCCTCTCCT CCCTCCTCTCCTCCCTCCTCTCCTGCCTCCTCTCCTCCCTCCCTTCCTCC CTCACTCCCTCCCGGCCCCACGACTGCCGCCGCCGCTTCCGCCACGACTC TTGTGGTGCTTCCCATTTTTCCCACGCAGCGAAGCGAGAAGTGATGGCGA CCACTACGCGCAGGCGAAGGAGGGTCTCCGCCCCTGCGGCGTTTCCGCAG GCCAAAACGAGCCCCTGCACGAGGATGAGCGAGGATCCACTCATCATCAG GAGCACGGCATCGAACCGAACCTTTTACGTCGACCCGCATGACAACGGCA AGAGGTGTCACTTCGGCGGAAAGGTCTTTCGCTGCTGCGAGTGCTGGGAG CTGGAAAACGCCGGGCAGCAGCCGCCGCACGCGTCCACCGCCACCATCAT GATCACCATCAACACGCCGTCCGGCCACGTCTTTGGTTACGACGCCGCCG GCGCGACCTTCGCCCTGAAGGCGATTCCCAAGGAAAAGATAGTACAGGCC GCGACCGCGCAAGGACGAGAAGTTGGAAACATGAGAGGGGAAGATCCGTT CAGAGAACTGGCGTCGCTTCAGTGGGCCAACGCCGACGGCGGCCACCCGC ACGTCGAGGAACTGGTGGAGGCGCTGGAAGACGAGCTATACCTGTTTAAA GTGACGCCCTGGTGTGAGTCCCGTGAGCGGCAGGGCGGGAAAGACGATGT TCTCGCTGCACTTTGATCTCGACTGGCTGCTTGCGAATTTCGCCTCGATT TTGATCGCCTCGTCTGGGAGAAAATCCTCGCCGTGCAGTTAGTGGCGCCT CTTCTTTCCTTCTGTCAATCTGATTTTAACCTCCCATACTCTCGTCACGT CGTCGGCGCCACCCCTTTCTTCTTTTCCGCCCTCCCCGCCGAATAACCAT GGGTTTTCCCCTTAACGGGTGCAGATGAGTTGGGAGAGGCGTTTGACGCC GTGCCATTTGAGGAAGACGAGGCGCGGCGGTTCCTGGGGGACGTACTCAG TGCCGTTGCCTTCCTCCACGAGCGGGGCATTTGTCACAGGTCCGTTTGAC GGCGGCTGGTGATGCAAAGTCCCGATTTTGCTCATCGGGCCGCCTGGCGC GGAAAACATGTCTGCCGCCTTTTTTGGACGAGGAAAGGGGGATAGATAAC TGTCGCGGCCGGGCAGTTTTGGGCGTGACTAAAGCCTGCTGCCTTCGTTC ATTGCGGCTTCTTCCATCTGTGCCTTCAGGCGGCCCTGCTGCAGCCATAA TCACGCCTGACCGTTTCACACCGATTTACACATTAAGGAACCGGCCCAAT CCCCGCTGCAATCAGGGACATTTCCCTGGAGAACTGCCTCTTGGAAGCGC GGGACGACGGTTCCCGATCGGTGCGCGTCGTGGACTTTGGGATGGCTATT GGGATCCCGATGGACCCGGAAGACGGTGGGCGGCCGGCGCTCATCAGCCC GCAGGGCAGCGTCGGCAAGGCCTCCACCATGGCTCCGGGTGAGAGTTTCT CGTCTGCCGAAGCCGAACGCTGCCGTTTTTCAGAGAGGAAAAATCTATCT TGGCGTTTAGCTAGAGCCCGACATGGATGCTTAGCGTCATTTCTGCTCGG CAACCTTCCTGCGTATCCACCGACCCCACTCCATTTTACGCAAATTCATC TGTTCACAAAACCCATCCATCCGTCTCTCTCACCCCGCTTTTATCCACCC ACTCGGCAGAGATCTATCACAACAAGCAACCCTTCGACGCCGCCGCCGCC GACCTTTTCTCCTGTGGCGCTGTGGCGTACATGTCGCTCCTCGGCTTCAT GCCGTGGACTCAAGTCAACGACGAGCTGTTTGTCGTCATCGCCCGCCGCC GCCGGCTGGCAGAGCAGCTAGCGGCGTGGGGGCGGGCCGACGTGGTGTCG GCGGCGGCGGTGTCGCTGCTGCAGTCCATGCTGGTTGAGGAACCGGCGCA CCGGCTGGGGCTGGAGGAGGTGCTGCGCCACCCATTTTTTGCCGCCGGTG CGGGAGGCGCCGCCGCCATGGCGGGTGCCGCAGCGGCCGCCGCGGTGGAT GCTACTGCATTCACCGCCGCTGCAGAGCCCGCCGCCATGGCGGTTGCCGG CGCCGCAGCGACTGCCGCTTCCGCGTGTGCCGGCGCTACAAATGCCGCAG ATGTCGCTTCTGCTGCCACCGTTACGGCCGCCGTCGGCGGGGCGAGGGGT TGTGCGGCCGCTGCCGAATGTGAACGGGGCAGGGATGGGGACGGGACGAG AGGCGCCATCGCCGCTGCCGCCACATGCAACGACGGCGGGACCGCCGCCG GGAGCGCAAGCTCCGTCGGCGGCGGAACGGAGTACAAGGAGGTCAGGAAC GATGCCACTGCCGTTGTCAGCCTAACCACAAGCGAGAAAGCCGGCGGCGG CAATGGCAGCGCAGGTAACGGGCACGCACGCGGCGACGCTGCTGCAGCCG TCGACAGCGGCGCACCCAGACATGCCGAGAACGACGCGGCCGCATGTTTT CGAGGCGCTTGTAACGGCTGTGAGCCATTTTGCACCAACGTCGACGGGGC ACACGGCAGTGCTGGAGAAGGGGGCTGGGTCGTTTTGTAGCTGAGTGTTT TTGAGCAGCTGTGTCGGGTTGTTTTGTATTGCAGCCCCAACAGACTGCTG CAACTGCACGAGGTTTGATGGAGCAAACCGAGACAAATCGCTGGCATGAG GGCTGGCACACACTTTACGACGCGGCGGGAAGACACGGGAACCACCGCCA TCCGCCTTTTTGCGATTTGACGTTTCCATTTAATGAAATAGATTTTGTAT CC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig629:15..3216+

>mRNA_P-wetherbeei_contig629.1.4 ID=mRNA_P-wetherbeei_contig629.1.4|Name=mRNA_P-wetherbeei_contig629.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig629:15..3216+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACCACTACGCGCAGGCGAAGGAGGGTCTCCGCCCCTGCGGCGTT
TCCGCAGGCCAAAACGAGCCCCTGCACGAGGATGAGCGAGGATCCACTCA
TCATCAGGAGCACGGCATCGAACCGAACCTTTTACGTCGACCCGCATGAC
AACGGCAAGAGGTGTCACTTCGGCGGAAAGGTCTTTCGCTGCTGCGAGTG
CTGGGAGCTGGAAAACGCCGGGCAGCAGCCGCCGCACGCGTCCACCGCCA
CCATCATGATCACCATCAACACGCCGTCCGGCCACGTCTTTGGTTACGAC
GCCGCCGGCGCGACCTTCGCCCTGAAGGCGATTCCCAAGGAAAAGATAGT
ACAGGCCGCGACCGCGCAAGGACGAGAAGTTGGAAACATGAGAGGGGAAG
ATCCGTTCAGAGAACTGGCGTCGCTTCAGTGGGCCAACGCCGACGGCGGC
CACCCGCACGTCGAGGAACTGGTGGAGGCGCTGGAAGACGAGCTATACCT
GTTTAAAGTGACGCCCTGGTGTGAGTCCCATGAGTTGGGAGAGGCGTTTG
ACGCCGTGCCATTTGAGGAAGACGAGGCGCGGCGGTTCCTGGGGGACGTA
CTCAGTGCCGTTGCCTTCCTCCACGAGCGGGGCATTTGTCACAGGGACAT
TTCCCTGGAGAACTGCCTCTTGGAAGCGCGGGACGACGGTTCCCGATCGG
TGCGCGTCGTGGACTTTGGGATGGCTATTGGGATCCCGATGGACCCGGAA
GACGGTGGGCGGCCGGCGCTCATCAGCCCGCAGGGCAGCGTCGGCAAGGC
CTCCACCATGGCTCCGGAGATCTATCACAACAAGCAACCCTTCGACGCCG
CCGCCGCCGACCTTTTCTCCTGTGGCGCTGTGGCGTACATGTCGCTCCTC
GGCTTCATGCCGTGGACTCAAGTCAACGACGAGCTGTTTGTCGTCATCGC
CCGCCGCCGCCGGCTGGCAGAGCAGCTAGCGGCGTGGGGGCGGGCCGACG
TGGTGTCGGCGGCGGCGGTGTCGCTGCTGCAGTCCATGCTGGTTGAGGAA
CCGGCGCACCGGCTGGGGCTGGAGGAGGTGCTGCGCCACCCATTTTTTGC
CGCCGGTGCGGGAGGCGCCGCCGCCATGGCGGGTGCCGCAGCGGCCGCCG
CGGTGGATGCTACTGCATTCACCGCCGCTGCAGAGCCCGCCGCCATGGCG
GTTGCCGGCGCCGCAGCGACTGCCGCTTCCGCGTGTGCCGGCGCTACAAA
TGCCGCAGATGTCGCTTCTGCTGCCACCGTTACGGCCGCCGTCGGCGGGG
CGAGGGGTTGTGCGGCCGCTGCCGAATGTGAACGGGGCAGGGATGGGGAC
GGGACGAGAGGCGCCATCGCCGCTGCCGCCACATGCAACGACGGCGGGAC
CGCCGCCGGGAGCGCAAGCTCCGTCGGCGGCGGAACGGAGTACAAGGAGG
TCAGGAACGATGCCACTGCCGTTGTCAGCCTAACCACAAGCGAGAAAGCC
GGCGGCGGCAATGGCAGCGCAGGTAACGGGCACGCACGCGGCGACGCTGC
TGCAGCCGTCGACAGCGGCGCACCCAGACATGCCGAGAACGACGCGGCCG
CATGTTTTCGAGGCGCTTGTAACGGCTGTGAGCCATTTTGCACCAACGTC
GACGGGGCACACGGCAGTGCTGGAGAAGGGGGCTGGGTCGTTTTGTAG
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