mRNA_P-wetherbeei_contig6280.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6280.3.1
Unique NamemRNA_P-wetherbeei_contig6280.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6280.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6280contigP-wetherbeei_contig6280:1263..2278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.2468066-UTR-P-wetherbeei_contig6280:1262..13911683186902.2468066-UTR-P-wetherbeei_contig6280:1262..1391Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6280 1263..1391 -
1683186902.2809503-UTR-P-wetherbeei_contig6280:2158..22781683186902.2809503-UTR-P-wetherbeei_contig6280:2158..2278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6280 2159..2278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186902.2638702-CDS-P-wetherbeei_contig6280:1391..14901683186902.2638702-CDS-P-wetherbeei_contig6280:1391..1490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6280 1392..1490 -
1683186902.2725866-CDS-P-wetherbeei_contig6280:1690..21581683186902.2725866-CDS-P-wetherbeei_contig6280:1690..2158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6280 1691..2158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6280.3.1prot_P-wetherbeei_contig6280.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6280 1392..2158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6280.3.1

>prot_P-wetherbeei_contig6280.3.1 ID=prot_P-wetherbeei_contig6280.3.1|Name=mRNA_P-wetherbeei_contig6280.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MAGESGFGGMGRATHGTVLVASAHASSTQRGLDAAMARFSAMSIDDAQCQ
PFQNARHPQQEHEHQRETHICHSPQTGCAQCQSCAACPPSGAARCAPLAG
VAVAGQPHSPERLYTQREVEGMTGEIASLRVENQHLIRLLREAERTNHEL
LARSEKAMQLEEKLKAAEYTNYALSVRLSAFNRPGSCA*
back to top

mRNA from alignment at P-wetherbeei_contig6280:1263..2278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6280.3.1 ID=mRNA_P-wetherbeei_contig6280.3.1|Name=mRNA_P-wetherbeei_contig6280.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1016bp|location=Sequence derived from alignment at P-wetherbeei_contig6280:1263..2278- (Phaeothamnion wetherbeei SAG_119_79)
TAACCAGCGGGCGTTCCCGTGTTTGAATTTGCTCCACCACCCTTTTCCGG
AAAAGCGGCGAGGTCGAGATTAGAGGATTAACACAGAGCGCATCACGTTC
CGATTACGCTTGGCCGATAAATGGCTGGGGAGAGCGGCTTCGGAGGCATG
GGAAGGGCAACCCATGGAACGGTGCTGGTGGCAAGTGCACACGCTTCTAG
CACACAGCGAGGGTTGGACGCAGCGATGGCGCGATTCTCAGCGATGAGCA
TCGACGATGCGCAATGCCAGCCGTTCCAAAACGCCAGGCATCCGCAGCAG
GAGCATGAGCATCAACGGGAAACTCACATCTGCCATAGCCCACAAACTGG
CTGCGCCCAATGTCAGAGTTGCGCGGCGTGCCCGCCATCAGGTGCAGCAA
GATGTGCGCCGCTGGCTGGGGTGGCAGTGGCGGGGCAGCCACACAGCCCT
GAGCGTCTGTACACGCAGCGGGAGGTGGAGGGAATGACGGGCGAGATCGC
GTCATTGCGGGTCGAGAACCAGCATCTCATTCGCTTGCTACGAGAGGCGG
AAAGGACAAATCATGAGTTACTAGCTCGGTCCGAGAAGGTGAGATGGCTT
TGTGTGCGTCATTTTGTATGAAGACATCGCGGCCTCCCAATTGTCGCCGT
TTTTCAAACATTTCTTTACCGTTTGCCTAATTACGGTTCAAGGAAAGTAC
CCCTTCCACTTTATCCTTGCTAAATTCGTTGCACTGCGTCGTTTTGGTCT
TCCCCAATGACGCCTCGGTTGTTACGGATACTGAGCAGGCTATGCAGCTG
GAGGAGAAGCTGAAAGCGGCAGAGTACACAAACTACGCCCTGAGCGTCCG
GCTGTCGGCTTTTAACCGCCCCGGCAGCTGCGCGTGACGGATTAAAAGGA
GCTTGGGATGTGAAAAGAGGGCAGTGCTCGCCAGGCGGCGGGGTATGACG
CGACTAATTTCTTGAAAAGTAGTAGGTACAGTATCATATTGTGAATATAA
ATCTTCATTGAAACGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6280:1263..2278-

>mRNA_P-wetherbeei_contig6280.3.1 ID=mRNA_P-wetherbeei_contig6280.3.1|Name=mRNA_P-wetherbeei_contig6280.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig6280:1263..2278- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGGGGAGAGCGGCTTCGGAGGCATGGGAAGGGCAACCCATGGAAC
GGTGCTGGTGGCAAGTGCACACGCTTCTAGCACACAGCGAGGGTTGGACG
CAGCGATGGCGCGATTCTCAGCGATGAGCATCGACGATGCGCAATGCCAG
CCGTTCCAAAACGCCAGGCATCCGCAGCAGGAGCATGAGCATCAACGGGA
AACTCACATCTGCCATAGCCCACAAACTGGCTGCGCCCAATGTCAGAGTT
GCGCGGCGTGCCCGCCATCAGGTGCAGCAAGATGTGCGCCGCTGGCTGGG
GTGGCAGTGGCGGGGCAGCCACACAGCCCTGAGCGTCTGTACACGCAGCG
GGAGGTGGAGGGAATGACGGGCGAGATCGCGTCATTGCGGGTCGAGAACC
AGCATCTCATTCGCTTGCTACGAGAGGCGGAAAGGACAAATCATGAGTTA
CTAGCTCGGTCCGAGAAGGCTATGCAGCTGGAGGAGAAGCTGAAAGCGGC
AGAGTACACAAACTACGCCCTGAGCGTCCGGCTGTCGGCTTTTAACCGCC
CCGGCAGCTGCGCGTGA
back to top