mRNA_P-wetherbeei_contig6274.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6274.2.1
Unique NamemRNA_P-wetherbeei_contig6274.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6274.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6274contigP-wetherbeei_contig6274:1548..3263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1217
Hectar predicted targeting categoryother localisation
Exons3
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.7414052-UTR-P-wetherbeei_contig6274:1547..15991683186901.7414052-UTR-P-wetherbeei_contig6274:1547..1599Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6274 1548..1599 +
1683186901.812424-UTR-P-wetherbeei_contig6274:3256..32631683186901.812424-UTR-P-wetherbeei_contig6274:3256..3263Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6274 3257..3263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.7640526-CDS-P-wetherbeei_contig6274:1599..17451683186901.7640526-CDS-P-wetherbeei_contig6274:1599..1745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6274 1600..1745 +
1683186901.7766345-CDS-P-wetherbeei_contig6274:1853..25261683186901.7766345-CDS-P-wetherbeei_contig6274:1853..2526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6274 1854..2526 +
1683186901.800144-CDS-P-wetherbeei_contig6274:2917..32561683186901.800144-CDS-P-wetherbeei_contig6274:2917..3256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6274 2918..3256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6274.2.1prot_P-wetherbeei_contig6274.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6274 1600..3256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6274.2.1

>prot_P-wetherbeei_contig6274.2.1 ID=prot_P-wetherbeei_contig6274.2.1|Name=mRNA_P-wetherbeei_contig6274.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=386bp
MTVGRPPKKRARQEGRGRAGLHLDRTNLSASRATGLIGHKEHGHLLAFLY
GFGDLLPIEGPAIVAAIFGNDQPHGRRVGEKRMLMHGGAACVGPGFGGGG
AFGELSVAAEAREAVKVGVARGCLALGCLVRSGAHDHVEHMILAHSHTRR
GMALLLAATQQQQPLPPHQQGQAIGAGGKSRGAGGGGSGSGKEAAAALAW
QRRAGNAKNAGGVALMEAANPAATSAARQKGSSEAAAWHFADGAPEETEA
LLCVFHIIESFYFSATGDETSHHEASMSAMDLFVAASASLSHATRDRLLP
ILQYLFFDLKWRQGSHTTQEVLLVRLLCQYLDVPFLFSFVTLTHARCFED
FTIAESAGPHSGGWLVPIFIRRTDPLWRILSFRCC*
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mRNA from alignment at P-wetherbeei_contig6274:1548..3263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6274.2.1 ID=mRNA_P-wetherbeei_contig6274.2.1|Name=mRNA_P-wetherbeei_contig6274.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1716bp|location=Sequence derived from alignment at P-wetherbeei_contig6274:1548..3263+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTCAAGCTTCGCGGCTGGGCTGAGCGCACCGCACTTTCAAAGCAGCG
CCATGACAGTTGGAAGACCTCCCAAAAAACGAGCGAGGCAAGAGGGTCGG
GGGCGCGCGGGACTGCACCTCGACCGCACCAACTTATCAGCTTCTAGAGC
GACAGGCTTGATCGGGCACAAGGAGCATGGCCATCTATTGGCGTTCCTGT
AGGTTACATCTTTGTGTTCAAAGGTTGAGTGTGACATGTCAAATGCTCTT
TATGTGCGCCGACTTTCCCTGATCACCCTGATTTACCTCTCTTCATTGCG
CTGCAGGTACGGCTTCGGCGATCTCTTGCCAATTGAAGGTCCAGCGATTG
TGGCAGCGATCTTCGGAAACGATCAGCCGCATGGGCGACGGGTGGGGGAG
AAGCGAATGCTGATGCACGGCGGCGCCGCCTGTGTCGGCCCCGGCTTCGG
CGGCGGCGGCGCCTTCGGAGAACTGAGCGTCGCCGCAGAGGCACGTGAGG
CGGTGAAGGTCGGTGTCGCCCGCGGCTGCTTAGCGCTGGGATGCCTGGTG
CGAAGCGGGGCGCATGATCACGTCGAACACATGATTCTTGCCCACAGCCA
CACGCGGCGGGGCATGGCGCTCTTGCTGGCCGCTACGCAGCAGCAGCAAC
CACTGCCGCCGCACCAGCAAGGGCAGGCAATAGGAGCGGGCGGCAAGAGC
CGCGGCGCCGGAGGCGGCGGCAGCGGCAGCGGAAAAGAGGCGGCTGCTGC
GCTGGCTTGGCAGCGAAGAGCGGGCAATGCGAAAAATGCCGGCGGCGTCG
CGTTGATGGAAGCGGCGAATCCAGCGGCGACCTCGGCGGCAAGGCAGAAG
GGCTCCTCGGAGGCGGCGGCTTGGCATTTCGCGGACGGAGCGCCGGAGGA
GACTGAGGCCCTCTTGTGCGTCTTTCATATCATCGAATCGTTTTACTTCT
CGGCGACGGGGGACGAGACGTCGCACCATGTGAGTGTGGGCGCGTCGGCG
GAGTTTGCGATGGGATGCTCGGGGATGCGCGGGCCTGTTGCGGTATCTCT
TCGGCACCAGTGTGGGGTTAGTACACGATGCGTCTCGTTTGTTCCGAATT
TTGACCTGGAGTAGTGGTGGCTTGCCAGTGGGCTGTGCGTCTGATTGTGG
GGAGTGATAAGAGGCGAGGAAGAAGCTGGGTCTTGTTACCAAAAACTAGG
CCTTGTCTTGCGAGAAGTGAAGTCGCTGCTAGCCTGCGTTGGACCCGCAG
TAATCCTCTTCATTCCCACCACCACTGTCATCACTGCCGCTGTCGCCGCC
GTCATCGCTCGCTGCCGCTGCCTTCGTCCGCCGCCGCCGCTGCCACCGCC
GCCGCATGCTCTCCATCCAGGAGGCGTCTATGAGCGCGATGGACTTGTTT
GTGGCGGCGTCAGCGTCGCTCTCGCACGCCACGCGGGACCGCCTGCTGCC
CATCCTGCAGTACCTCTTTTTTGACCTCAAGTGGCGCCAGGGATCACACA
CTACCCAGGAGGTGCTTCTCGTGCGACTGCTTTGCCAGTATCTTGACGTT
CCGTTTCTTTTCTCTTTTGTTACCCTCACTCATGCGCGGTGCTTCGAAGA
CTTTACTATAGCAGAGTCTGCTGGCCCACACAGCGGCGGCTGGCTGGTGC
CCATTTTTATCCGGAGGACAGACCCTCTTTGGCGCATTCTTTCCTTTCGA
TGCTGTTAACTCTCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6274:1548..3263+

>mRNA_P-wetherbeei_contig6274.2.1 ID=mRNA_P-wetherbeei_contig6274.2.1|Name=mRNA_P-wetherbeei_contig6274.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig6274:1548..3263+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGTTGGAAGACCTCCCAAAAAACGAGCGAGGCAAGAGGGTCGGGG
GCGCGCGGGACTGCACCTCGACCGCACCAACTTATCAGCTTCTAGAGCGA
CAGGCTTGATCGGGCACAAGGAGCATGGCCATCTATTGGCGTTCCTGTAC
GGCTTCGGCGATCTCTTGCCAATTGAAGGTCCAGCGATTGTGGCAGCGAT
CTTCGGAAACGATCAGCCGCATGGGCGACGGGTGGGGGAGAAGCGAATGC
TGATGCACGGCGGCGCCGCCTGTGTCGGCCCCGGCTTCGGCGGCGGCGGC
GCCTTCGGAGAACTGAGCGTCGCCGCAGAGGCACGTGAGGCGGTGAAGGT
CGGTGTCGCCCGCGGCTGCTTAGCGCTGGGATGCCTGGTGCGAAGCGGGG
CGCATGATCACGTCGAACACATGATTCTTGCCCACAGCCACACGCGGCGG
GGCATGGCGCTCTTGCTGGCCGCTACGCAGCAGCAGCAACCACTGCCGCC
GCACCAGCAAGGGCAGGCAATAGGAGCGGGCGGCAAGAGCCGCGGCGCCG
GAGGCGGCGGCAGCGGCAGCGGAAAAGAGGCGGCTGCTGCGCTGGCTTGG
CAGCGAAGAGCGGGCAATGCGAAAAATGCCGGCGGCGTCGCGTTGATGGA
AGCGGCGAATCCAGCGGCGACCTCGGCGGCAAGGCAGAAGGGCTCCTCGG
AGGCGGCGGCTTGGCATTTCGCGGACGGAGCGCCGGAGGAGACTGAGGCC
CTCTTGTGCGTCTTTCATATCATCGAATCGTTTTACTTCTCGGCGACGGG
GGACGAGACGTCGCACCATGAGGCGTCTATGAGCGCGATGGACTTGTTTG
TGGCGGCGTCAGCGTCGCTCTCGCACGCCACGCGGGACCGCCTGCTGCCC
ATCCTGCAGTACCTCTTTTTTGACCTCAAGTGGCGCCAGGGATCACACAC
TACCCAGGAGGTGCTTCTCGTGCGACTGCTTTGCCAGTATCTTGACGTTC
CGTTTCTTTTCTCTTTTGTTACCCTCACTCATGCGCGGTGCTTCGAAGAC
TTTACTATAGCAGAGTCTGCTGGCCCACACAGCGGCGGCTGGCTGGTGCC
CATTTTTATCCGGAGGACAGACCCTCTTTGGCGCATTCTTTCCTTTCGAT
GCTGTTAA
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