mRNA_P-wetherbeei_contig6274.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6274.1.1
Unique NamemRNA_P-wetherbeei_contig6274.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: A0A6A3N8M8_9STRA (Laminin IV type A domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N8M8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.810e-22
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 LAPGTPSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTLRA 507
            L    P     +PCG V+ NVWH +A  TF A L+   AYGG L+F L++ S   +   R G+ +++ + +DG     +         G ++   +S  ++ S VLRED GW++EPD A +   +F + L TAT L IRGD+W Y      +S  GQEVV+   V L A
Sbjct: 3115 LRGAVPRLDAAFPCGPVFSNVWHFSAPVTFTAKLKG--AYGGRLQFRLMAPSFNGSPRPRRGQVSILSSGSDGVATRISVAL------GSFDLPSASRWTFYSVVLREDFGWITEPDAASLTSDEFQAVLATATALWIRGDVWGY-----DSSGPGQEVVYLNDVALYA 3270          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: A0A329S628_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S628_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.570e-21
Identity = 59/164 (35.98%), Postives = 91/164 (55.49%), Query Frame = 1
Query:   16 PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTLRA 507
            P     +PCG V+ N+WH +AS TF++ L++  AYGG L++ L++ S   +   R G+ ++  T +DG     ++        G ++   +S  +Y S VLRED GW++EPDG  +    F + L+ AT L IRGD+W Y      ++  GQEVV+   V L A
Sbjct: 3108 PRLDATFPCGPVFSNIWHFSASATFVSTLKT--AYGGRLQYRLLAPSFNGSPRPRRGQVSIFSTNSDGDLTQISAAL------GSFDLPSASHWTYYSVVLREDFGWITEPDGNTLTAAKFGAVLEGATALWIRGDIWGY-----DSTGPGQEVVYLNDVALYA 3258          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: A0A8J5M810_9STRA (Laminin IV type A domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M810_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.850e-21
Identity = 58/164 (35.37%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   16 PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTLRA 507
            P     +PCG V+ N+WH +A  TF++ L++  AYGG L++ L++ S   +   R G+ ++  T +DG     ++        G ++   +S  +Y S VLRED GW++EPDG  +    F + L+ AT L IRGD+W Y      ++  GQEVV+   V L A
Sbjct: 2100 PRLDATFPCGPVFSNIWHFSAPATFVSTLKT--AYGGRLQYRLLAPSFNGSPRPRRGQVSIFSTNSDGVLTQISAAL------GSFDLPSASHWTYYSVVLREDFGWITEPDGDTLTAAKFGAVLEGATALWIRGDIWGY-----DSTGPGQEVVYLNDVALYA 2250          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: A0A2D4BI64_PYTIN (Calx-beta domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI64_PYTIN)

HSP 1 Score: 97.4 bits (241), Expect = 2.300e-20
Identity = 69/172 (40.12%), Postives = 88/172 (51.16%), Query Frame = 1
Query:    1 LAPGT-PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTLRAPP 513
            L PG  P  +  +PCG+VY NVWH AAS + + AL  P  YGG L+F L++ S     S RP RG + + ++ G  +S           GG+     SS +  S +LRED GW+ EP G     + F   L  AT L IRGDLW Y      A   GQEVV+   V L A P
Sbjct:  734 LTPGVVPVVNPSFPCGQVYSNVWHFAASQSIVNAL--PQVYGGRLQFRLLAQSLNG--SPRPRRGQISIFSSAGVQISLAL--------GGFPLPDPSSWTAYSVILREDFGWIQEPGGEPASTELFRQVLAQATALWIRGDLWGYS-----AQGPGQEVVYINDVKLFARP 888          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: H3H1E4_PHYRM (Laminin IV type A domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1E4_PHYRM)

HSP 1 Score: 97.4 bits (241), Expect = 2.540e-20
Identity = 64/164 (39.02%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   16 PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTLRA 507
            P     +PCG V+ NVWH +A   F   L   AAYGG L+F L++ S     S RP RG V +   +  G++           G ++   +S  +Y S VLRED GW++EPDGA I    F + L  AT L IRGD+W Y       + +GQEVV+   V L A
Sbjct: 3515 PRLDATFPCGPVFANVWHFSAPAAFTTKLA--AAYGGRLQFRLLAPSFNG--SPRPRRGQVAIFGKNADGIATQMSVAL----GSFDLPSASRWTYYSVVLREDFGWITEPDGASITAAAFKAVLGGATRLWIRGDIWGY-----DPTGAGQEVVYLNDVVLLA 3665          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: A0A0P1AEQ6_PLAHL (Concanavalin A-like lectin/glucanase, subgroup n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEQ6_PLAHL)

HSP 1 Score: 95.9 bits (237), Expect = 8.690e-20
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 YPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTL 501
            +PCG VY N+WH  A  TF+  L+   AYGG L++ L+++S       RP RG V + + +  G+            G ++    S+ +Y S VLRED GW++EPDG  +   DF   L  AT L IRGD+W Y      ++  GQEVV+   V L
Sbjct: 3105 FPCGPVYSNIWHFTAPATFVTKLKL--AYGGRLQYRLLASSFNGTP--RPRRGQVSIFSTNTAGLQNQISIAL----GSFDLPSLSNWTYYSIVLREDFGWITEPDGKTLTLADFKESLDGATALWIRGDIWGY-----DSTGPGQEVVYLNDVAL 3247          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: A0A225WDI6_9STRA (Laminin IV type A domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDI6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.610e-19
Identity = 60/170 (35.29%), Postives = 88/170 (51.76%), Query Frame = 1
Query:    1 LAPGT-PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTLRA 507
            L PG  P     +PCG V+ N+W  +A   F + L++  AYGG L+F L++ S   +   R G+ ++  T+  G     +         G ++   + S +Y S VLRED GW+SEP+G  +    F + L  AT LLIRGD+W Y      ++ SGQE V+   V L A
Sbjct: 3335 LLPGEIPRLDSAFPCGPVFANIWQFSAPVQFTSKLKN--AYGGRLQFRLLAPSFNGSPRPRRGQLSIFSTSNTGAQSQMSVAL------GSFDLPSALSWTYYSVVLREDFGWISEPNGTSLSSAQFQTLLHDATTLLIRGDMWGY-----DSTGSGQEAVYLNDVALYA 3491          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: W2QEP3_PHYPN (LamGL domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QEP3_PHYPN)

HSP 1 Score: 94.0 bits (232), Expect = 4.070e-19
Identity = 57/162 (35.19%), Postives = 85/162 (52.47%), Query Frame = 1
Query:   16 PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTL 501
            P     +PCG V+ N+WH +A   F++ L+   AYGG L++ L++ S   +   R G+ ++  T +DG     ++        G +    +S  +Y S VLRED GW++EPDG  +   +F + L  AT L IRGD+W Y   G      GQEVV+   V L
Sbjct: 3098 PRLDATFPCGPVFSNIWHFSAPAIFVSKLKD--AYGGRLQYRLLAPSFNGSPRPRRGQVSIFSTNSDGVVTQISAAL------GSFNLPSASPWTYYSVVLREDFGWITEPDGDTLSAAEFGAVLDGATVLWIRGDIWGYDSNG-----PGQEVVYLNDVAL 3246          
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Match: D0MSJ7_PHYIT (LamGL domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MSJ7_PHYIT)

HSP 1 Score: 92.8 bits (229), Expect = 1.020e-18
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   16 PSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVSASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRSYVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGRPASASGQEVVHFGAVTL 501
            P     +PCG V+ ++WH +A  + +  L+  AAYGG L++ L++ S   +   R G+ ++  T + G     ++        G ++   +S  +Y S VLRED GW++EPDG  +   +F + L  AT L IRGD+W Y      +S  GQEVV+   V L
Sbjct: 2773 PRLDAAFPCGPVFSSIWHFSAPASLITKLK--AAYGGRLQYRLLTPSFNGSPRPRRGQVSIFSTTSIGAVTQISAAL------GSFDLPSASRWTYYSVVLREDFGWIAEPDGGALTAAEFGAVLDGATALWIRGDIWGY-----DSSGPGQEVVYLNDVEL 2921          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6274.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6A3N8M8_9STRA1.810e-2236.69Laminin IV type A domain-containing protein n=7 Ta... [more]
A0A329S628_9STRA1.570e-2135.98Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A8J5M810_9STRA9.850e-2135.37Laminin IV type A domain-containing protein n=1 Ta... [more]
A0A2D4BI64_PYTIN2.300e-2040.12Calx-beta domain-containing protein n=1 Tax=Pythiu... [more]
H3H1E4_PHYRM2.540e-2039.02Laminin IV type A domain-containing protein n=1 Ta... [more]
A0A0P1AEQ6_PLAHL8.690e-2037.82Concanavalin A-like lectin/glucanase, subgroup n=1... [more]
A0A225WDI6_9STRA1.610e-1935.29Laminin IV type A domain-containing protein n=1 Ta... [more]
W2QEP3_PHYPN4.070e-1935.19LamGL domain-containing protein n=10 Tax=Phytophth... [more]
D0MSJ7_PHYIT1.020e-1833.95LamGL domain-containing protein n=2 Tax=Phytophtho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6274contigP-wetherbeei_contig6274:218..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog36331.EPrPI00000021214
PFAMsCalx-beta,Laminin_B,Laminin_G_3
Model size516
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.49e-23
EggNOG OGs2D0W5@1|root,2SFRG@2759|Eukaryota,1MDAC@121069|Pythiales
DescriptionSource PGD
Cds size516
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.8402717-CDS-P-wetherbeei_contig6274:217..7331683186901.8402717-CDS-P-wetherbeei_contig6274:217..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6274 218..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6274.1.1prot_P-wetherbeei_contig6274.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6274 218..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6274.1.1

>prot_P-wetherbeei_contig6274.1.1 ID=prot_P-wetherbeei_contig6274.1.1|Name=mRNA_P-wetherbeei_contig6274.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
LAPGTPSASGFYPCGRVYGNVWHLAASPTFLAALRSPAAYGGSLEFSLVS
ASGGDAESLRPGRGTVVLTAADGRGMSFTSLFPPPRTGGGYESGGSSSRS
YVSAVLREDSGWVSEPDGAEILHQDFHSRLQTATELLIRGDLWSYGGGGR
PASASGQEVVHFGAVTLRAPP*
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mRNA from alignment at P-wetherbeei_contig6274:218..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6274.1.1 ID=mRNA_P-wetherbeei_contig6274.1.1|Name=mRNA_P-wetherbeei_contig6274.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig6274:218..733+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGCGCCCGGCACTCCCAGCGCGAGCGGCTTCTACCCGTGCGGCCGCGT CTACGGCAACGTCTGGCATCTAGCGGCATCGCCGACGTTCCTGGCAGCGC TGCGGTCGCCTGCGGCATACGGCGGCAGCCTAGAATTTTCCTTGGTAAGT GCCAGCGGCGGCGACGCAGAGTCCCTGCGGCCAGGACGCGGCACCGTGGT TCTGACGGCGGCGGACGGGCGCGGCATGTCGTTTACGTCGCTGTTTCCAC CCCCGCGAACCGGCGGGGGCTACGAAAGCGGTGGCAGCAGCAGCCGTAGC TACGTCAGCGCCGTGCTGAGGGAAGACTCGGGGTGGGTCAGCGAACCGGA CGGCGCTGAAATTCTCCATCAGGATTTCCACAGTCGGCTCCAGACCGCTA CTGAGCTGCTCATCCGTGGAGACTTGTGGTCGTACGGCGGCGGCGGCCGC CCTGCCAGCGCGTCTGGCCAGGAGGTGGTCCATTTCGGTGCCGTCACGCT GCGGGCACCGCCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6274:218..733+

>mRNA_P-wetherbeei_contig6274.1.1 ID=mRNA_P-wetherbeei_contig6274.1.1|Name=mRNA_P-wetherbeei_contig6274.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig6274:218..733+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGCGCCCGGCACTCCCAGCGCGAGCGGCTTCTACCCGTGCGGCCGCGT
CTACGGCAACGTCTGGCATCTAGCGGCATCGCCGACGTTCCTGGCAGCGC
TGCGGTCGCCTGCGGCATACGGCGGCAGCCTAGAATTTTCCTTGGTAAGT
GCCAGCGGCGGCGACGCAGAGTCCCTGCGGCCAGGACGCGGCACCGTGGT
TCTGACGGCGGCGGACGGGCGCGGCATGTCGTTTACGTCGCTGTTTCCAC
CCCCGCGAACCGGCGGGGGCTACGAAAGCGGTGGCAGCAGCAGCCGTAGC
TACGTCAGCGCCGTGCTGAGGGAAGACTCGGGGTGGGTCAGCGAACCGGA
CGGCGCTGAAATTCTCCATCAGGATTTCCACAGTCGGCTCCAGACCGCTA
CTGAGCTGCTCATCCGTGGAGACTTGTGGTCGTACGGCGGCGGCGGCCGC
CCTGCCAGCGCGTCTGGCCAGGAGGTGGTCCATTTCGGTGCCGTCACGCT
GCGGGCACCGCCGTGA
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