mRNA_P-wetherbeei_contig6266.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6266.2.1
Unique NamemRNA_P-wetherbeei_contig6266.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A1F3Z5P9_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 TaxID=1797483 RepID=A0A1F3Z5P9_9PROT)

HSP 1 Score: 333 bits (853), Expect = 3.580e-110
Identity = 177/250 (70.80%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            +     I+DPRFSI HA FSEL  VLDA     +HG L DLG SSPQL++A+RGFSFR DGPLDMRMDPTRG SAA+WLA A E  IRE I+ YGEERFAKQIAAAIVAARA EPL RTRQLA LV  AVRTREAGQ+PATRTFQALRI +NRELEEVSL LP A +RL PGGRL V SFHSLEDRI KRF+R      LPRDLP+RA ++PQP L  VGRA++    EV ANPR+RSA LR+AERTEAP
Sbjct:   62 VRAAGEISDPRFSIAHASFSELARVLDAQRARLVHGVLADLGASSPQLEDAARGFSFRADGPLDMRMDPTRGVSAADWLAAATEPQIREAIEQYGEERFAKQIAAAIVAARAREPLVRTRQLADLVAAAVRTREAGQNPATRTFQALRILVNRELEEVSLMLPQAVARLAPGGRLVVASFHSLEDRIVKRFLRSLARPALPRDLPIRASEMPQPALRIVGRAVRPGAREVAANPRARSAVLRVAERTEAP 311          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A1F4BM66_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BM66_9PROT)

HSP 1 Score: 325 bits (833), Expect = 3.580e-107
Identity = 169/250 (67.60%), Postives = 196/250 (78.40%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            ++  R+I D RFS+ HA FSEL  VLDA G   +HG L DLGVSSPQLD+ +RGFSFR DGPLDMRMDPTRG SAA+WLA A ES+I+ VI+DYGEERFAKQIA  +VAARA  P+  TRQLA LVG+AVRTREAGQDPATRTFQALRI +NRELEEVSL LP A +RL PGGRLAV+SFHSLEDRI KRF+R      LPRDLP+RA ++PQ  L  + R ++A   E   NPR+RSA LR+AERT+ P
Sbjct:   60 VDAARKIVDARFSVAHAPFSELSRVLDAQGARLVHGVLADLGVSSPQLDDPARGFSFRADGPLDMRMDPTRGVSAADWLATAAESEIKGVIRDYGEERFAKQIAKTLVAARAARPIRGTRQLADLVGQAVRTREAGQDPATRTFQALRILVNRELEEVSLMLPQAVARLAPGGRLAVLSFHSLEDRIVKRFMRALAQPTLPRDLPIRASEMPQAALRILARPVRAGAAERAVNPRARSAVLRVAERTDVP 309          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A1F4F371_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4F371_9PROT)

HSP 1 Score: 322 bits (825), Expect = 6.220e-106
Identity = 170/250 (68.00%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            +   + +AD RFSI HA FSELG VLD+  V  +HG L DLG+SSPQLD  +RGFSFR DGPLDMRMDPTRGESAA+WLA A +++IRE I+++GEERFAKQIAAA+VAARA EP+ RT+QLA LV  AVRTREAGQDPATRTFQALRI +NRELEEVSL LP A  RL  GGRLAV+SFHSLEDRI KRF+R      LPRDLP+RA ++P   L  VGR ++    E+ ANPR+RSA LR+AERTEAP
Sbjct:   62 VAAAQTLADARFSIVHAPFSELGRVLDSARVPLVHGVLADLGMSSPQLDTPARGFSFRRDGPLDMRMDPTRGESAAQWLASATQTEIREAIENHGEERFAKQIAAALVAARAREPIVRTQQLADLVAAAVRTREAGQDPATRTFQALRILVNRELEEVSLMLPQAVVRLAAGGRLAVVSFHSLEDRIVKRFMRALAQPALPRDLPIRASEMPPAALRIVGRPVRPGEAELAANPRARSAVLRVAERTEAP 311          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A1F3Y977_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3Y977_9PROT)

HSP 1 Score: 322 bits (825), Expect = 6.220e-106
Identity = 168/249 (67.47%), Postives = 196/249 (78.71%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEA 747
            IE  R I DPRF+  HA FSE   VLD  G+ Q+HG L DLGVSSPQL + +RGFSFR DGPLDMRMDP+RG SAA+WLA A+E  IRE I  YGEERFAKQ+A AIVAARA EP+ RT QLA +V  AVRTREAGQ+PATRTFQALRI +NRELEE++L LP A +RL PGGRLAVISFHSLEDR+ KRF+R    + LP DLP+RA +LPQP L  +G+A++AS  E+ ANPR+RSATLR AER+ A
Sbjct:   62 IEAARAITDPRFAAEHAPFSEFAQVLDRRGIGQVHGVLADLGVSSPQLADPARGFSFRADGPLDMRMDPSRGVSAADWLATASEQQIREAIGGYGEERFAKQVAKAIVAARAREPIRRTEQLAAVVAAAVRTREAGQNPATRTFQALRILVNRELEEIALMLPQAVARLTPGGRLAVISFHSLEDRLVKRFLRACSESGLPADLPIRASELPQPPLRILGKAVRASAAEIAANPRARSATLRAAERSSA 310          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A1F4EYC5_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EYC5_9PROT)

HSP 1 Score: 321 bits (822), Expect = 1.500e-105
Identity = 170/249 (68.27%), Postives = 192/249 (77.11%), Query Frame = 1
Query:   13 RRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAPWRN 759
            R I DPRF+    +F  L   LDA GV    G LFDLG SSPQ D+ SRGFSFR DGPLDMRMDPT G SAA+WLA A+E +I EVI+ YGEERFAKQIA AIVAAR  EPL RTRQLA LV +AVRTRE GQDPATRTFQALRI +NRELEEVSL LP A  RL PGGRLAVISFHSLEDRI KRF+RDA    LPR+LPL A ++PQ     +GRAI+ +  E+ ANPR+RSATLR+AERT AP+++
Sbjct:   60 REIPDPRFTFVRKNFGALSAALDACGVRLAQGMLFDLGASSPQFDDPSRGFSFRADGPLDMRMDPTEGTSAADWLAAASEKEIAEVIRGYGEERFAKQIAKAIVAARGREPLARTRQLADLVAKAVRTREPGQDPATRTFQALRIHVNRELEEVSLMLPQALERLAPGGRLAVISFHSLEDRIVKRFMRDAAQPALPRELPLTASEMPQAPAKLIGRAIRPAADEIAANPRARSATLRVAERTAAPYQS 308          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: UPI00135842F8 (16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH n=1 Tax=Andreprevotia sp. IGB-42 TaxID=2497473 RepID=UPI00135842F8)

HSP 1 Score: 319 bits (817), Expect = 5.560e-105
Identity = 168/250 (67.20%), Postives = 197/250 (78.80%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            I E + IADPRF+I H  F  L   LD LG+ Q++G L DLGVSSPQLD+ SRGFSFR D PLDMRMD TRG +AA+WL  A+E DI EV++DYGEERFAKQ+AAAIVA R  +P   TR+LA +V  AVRTRE GQDPATRTFQA+RIFINRELEE++L LP A SRLVPGGRL+VI+FHSLEDRI KRF++DA   DLP  LP+RA  +P+P L PVG+ I+AS  EV ANPR+RSA LR+AERT AP
Sbjct:   59 IAEAQTIADPRFTIVHDGFRTLAQSLDDLGIQQINGLLLDLGVSSPQLDDGSRGFSFRFDAPLDMRMDTTRGITAADWLNSADEKDIAEVVRDYGEERFAKQVAAAIVARRLEQPFSTTRELAAVVATAVRTREPGQDPATRTFQAVRIFINRELEELALILPQALSRLVPGGRLSVIAFHSLEDRIVKRFVQDASKNDLPDRLPVRAADIPEPPLKPVGKPIRASKDEVDANPRARSAILRVAERTGAP 308          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A537CK98_9PROT (Ribosomal RNA small subunit methyltransferase H n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CK98_9PROT)

HSP 1 Score: 319 bits (817), Expect = 8.290e-105
Identity = 169/247 (68.42%), Postives = 193/247 (78.14%), Query Frame = 1
Query:   13 RRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAPW 753
            R + D RF     +F  L   LDA GV   HG LFDLG+SSPQLD+ +RGFSFR DGPLDMRMDP  G SAA+WLA A E +IR VI+DYGEERFAKQIAAAIVAAR+  P+ RTRQLA LVG+AVRTRE GQDPATRTFQALRI +NRELEEVSL LP A +RL  GGRLAVISF SLEDRI KRF++ A   D+PR+LPLRA ++PQP L  +GRAI+ S  E  ANPR+RSATLR+AERT AP+
Sbjct:   60 RELRDGRFMFLKHNFGTLSAALDAAGVRSAHGMLFDLGISSPQLDDPARGFSFRADGPLDMRMDPGEGVSAAQWLATAEEQEIRRVIRDYGEERFAKQIAAAIVAARSRGPIVRTRQLADLVGQAVRTREPGQDPATRTFQALRIHLNRELEEVSLMLPQAVARLASGGRLAVISFQSLEDRIVKRFMQHAARPDVPRELPLRAIEMPQPALKLIGRAIRPSAAETAANPRARSATLRVAERTAAPY 306          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A2R5EJI3_9RHOO (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Azospira sp. I13 TaxID=1765050 RepID=A0A2R5EJI3_9RHOO)

HSP 1 Score: 318 bits (814), Expect = 2.210e-104
Identity = 170/252 (67.46%), Postives = 197/252 (78.17%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAG--AADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            I  G +I D RFS+ H  FS++  VL   G+  + G L D+GVSSPQ+DE  RGFSFR D PLDMRMD TRGE+AAEWLARA E DI EVI+DYGEERFAKQIA  IVAAR+  P+  TRQLA LV EAVRTRE GQDPATR+FQA+RI IN+ELEE+SL+L  A + L PGGRLAVISFHSLEDRI K F+RD    AA++P+ LPLRADQLPQP L  VG+AI+AS  EV ANPRSRSA +R+AERTE+P
Sbjct:   62 IAAGAQIQDQRFSLHHTPFSDMAEVLQQQGIGLVDGVLLDIGVSSPQIDEGERGFSFRFDAPLDMRMDTTRGETAAEWLARAEEKDIAEVIRDYGEERFAKQIAKKIVAARSERPIATTRQLAALVAEAVRTREPGQDPATRSFQAIRIHINQELEELSLALSQALALLKPGGRLAVISFHSLEDRIVKNFLRDQAEPAANVPKGLPLRADQLPQPTLRLVGKAIRASAAEVAANPRSRSAIMRVAERTESP 313          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: A0A0S8BA07_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8BA07_9PROT)

HSP 1 Score: 318 bits (814), Expect = 2.780e-104
Identity = 169/250 (67.60%), Postives = 191/250 (76.40%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            +   + + DPR    HA    L   LDA GV    G LFDLGVSSPQLD+ +RGFSFR DGPLDMRMDP+ G+SAA+WLA A E +IREVI+DYGEERFAKQIAAAIV ARA+EP+  TRQLA LVG AVRTRE GQDPATRTFQALRIF+NRELEEVSL LP A +RL  GGRLAVISFHSLEDRI KRF   A   +LP DLP+RA ++P PLL  VGRA + S  E+  NPR+RSA LR+AERT AP
Sbjct:   62 VAAAQALGDPRLLAVHAAMRSLAATLDAAGVQGADGMLFDLGVSSPQLDDPARGFSFRADGPLDMRMDPSYGDSAAQWLATAAEPEIREVIRDYGEERFAKQIAAAIVVARASEPIRTTRQLADLVGSAVRTREPGQDPATRTFQALRIFVNRELEEVSLMLPQAVARLAAGGRLAVISFHSLEDRIVKRFFAGAARPELPADLPIRASEMPAPLLRLVGRAQRPSAAELAENPRARSALLRVAERTAAP 311          
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Match: G8QMT5_AZOOP (Ribosomal RNA small subunit methyltransferase H n=5 Tax=Betaproteobacteria TaxID=28216 RepID=G8QMT5_AZOOP)

HSP 1 Score: 314 bits (804), Expect = 7.200e-103
Identity = 168/252 (66.67%), Postives = 197/252 (78.17%), Query Frame = 1
Query:    1 IEEGRRIADPRFSITHAHFSELGGVLDALGVAQLHGALFDLGVSSPQLDEASRGFSFRMDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIVAARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEVSLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAG--AADLPRDLPLRADQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAP 750
            I  G  I D RFS+ H  FSE+G VL   G+  + G L D+GVSSPQ+DE  RGFSFR D PLDMRMD TRGE+AAEWLARA+E++I EVI+DYGEERFAKQIA  IVAAR+  P+  TRQLA LV EAVRTRE GQDPATR+FQA+RI IN+EL+E+SL+L  A + L PGGRLAVISFHSLEDRI K F+RD    A+ LP+ LPLRADQLPQP L+ VG+A++AS  EV ANPRSRSA +R+AERT  P
Sbjct:   62 IAAGASIQDKRFSLHHTPFSEMGEVLQQQGIGLVDGVLLDIGVSSPQIDEGERGFSFRFDAPLDMRMDTTRGETAAEWLARADETEIAEVIRDYGEERFAKQIAKKIVAARSERPVATTRQLAALVAEAVRTREPGQDPATRSFQAIRIHINQELQELSLALSQALALLKPGGRLAVISFHSLEDRIVKNFLRDQAEPASHLPKGLPLRADQLPQPTLVLVGKAVRASREEVAANPRSRSAIMRVAERTAVP 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6266.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3Z5P9_9PROT3.580e-11070.80Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A1F4BM66_9PROT3.580e-10767.60Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A1F4F371_9PROT6.220e-10668.00Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A1F3Y977_9PROT6.220e-10667.47Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A1F4EYC5_9PROT1.500e-10568.27Ribosomal RNA small subunit methyltransferase H n=... [more]
UPI00135842F85.560e-10567.2016S rRNA (cytosine(1402)-N(4))-methyltransferase R... [more]
A0A537CK98_9PROT8.290e-10568.42Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A2R5EJI3_9RHOO2.210e-10467.46Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A0S8BA07_9PROT2.780e-10467.60Ribosomal RNA small subunit methyltransferase H n=... [more]
G8QMT5_AZOOP7.200e-10366.67Ribosomal RNA small subunit methyltransferase H n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6266contigP-wetherbeei_contig6266:2478..3505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog640081.Dsui_0245
Preferred namersmH
PFAMsMethyltransf_5
Model size1028
Max annot lvl206389|Rhodocyclales
KEGG koko:K03438
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.3e-82
EggNOG OGsCOG0275@1|root,COG0275@2|Bacteria,1MUT4@1224|Proteobacteria,2VIYT@28216|Betaproteobacteria,2KUQH@206389|Rhodocyclales
EC2.1.1.199
DescriptionSpecifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA
Cds size588
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.178727-UTR-P-wetherbeei_contig6266:2477..27431683186901.178727-UTR-P-wetherbeei_contig6266:2477..2743Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6266 2478..2743 -
1683186901.1964428-UTR-P-wetherbeei_contig6266:3331..35051683186901.1964428-UTR-P-wetherbeei_contig6266:3331..3505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6266 3332..3505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.188385-CDS-P-wetherbeei_contig6266:2743..33311683186901.188385-CDS-P-wetherbeei_contig6266:2743..3331Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6266 2744..3331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6266.2.1prot_P-wetherbeei_contig6266.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6266 2744..3331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6266.2.1

>prot_P-wetherbeei_contig6266.2.1 ID=prot_P-wetherbeei_contig6266.2.1|Name=mRNA_P-wetherbeei_contig6266.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=196bp
MDGPLDMRMDPTRGESAAEWLARANESDIREVIKDYGEERFAKQIAAAIV
AARATEPLGRTRQLAHLVGEAVRTREAGQDPATRTFQALRIFINRELEEV
SLSLPIAASRLVPGGRLAVISFHSLEDRIAKRFIRDAGAADLPRDLPLRA
DQLPQPLLMPVGRAIKASTGEVRANPRSRSATLRIAERTEAPWRN*
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mRNA from alignment at P-wetherbeei_contig6266:2478..3505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6266.2.1 ID=mRNA_P-wetherbeei_contig6266.2.1|Name=mRNA_P-wetherbeei_contig6266.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1028bp|location=Sequence derived from alignment at P-wetherbeei_contig6266:2478..3505- (Phaeothamnion wetherbeei SAG_119_79)
ATCGAAGAGGGGCGGCGGATCGCCGACCCGCGCTTCTCGATCACGCATGC GCATTTCTCGGAACTGGGCGGGGTGCTCGATGCGCTTGGCGTGGCGCAGC TGCATGGCGCGTTGTTCGACCTGGGCGTCTCTTCGCCGCAGCTGGACGAA GCGTCGCGCGGATTCTCGTTCCGGATGGACGGGCCCCTCGACATGCGCAT GGATCCGACACGCGGGGAATCCGCGGCGGAGTGGCTGGCCCGGGCGAATG AGTCCGACATCAGGGAGGTGATCAAGGACTATGGCGAAGAACGGTTTGCT AAACAGATTGCAGCGGCGATTGTTGCTGCTAGGGCAACCGAGCCTCTCGG GCGCACGCGGCAGCTTGCCCATCTCGTGGGTGAAGCGGTCCGCACACGCG AGGCCGGGCAGGATCCGGCGACGCGCACCTTCCAGGCTCTACGGATTTTC ATCAATCGGGAGCTTGAGGAAGTGTCGCTGAGCCTGCCGATCGCCGCGTC GCGGCTCGTGCCCGGCGGGCGCCTGGCGGTCATCAGCTTCCATTCGCTCG AGGACCGCATCGCCAAGCGGTTCATCCGCGACGCCGGCGCGGCCGACCTG CCGCGCGACCTGCCGCTGCGCGCCGACCAGCTGCCGCAACCGTTGCTCAT GCCCGTGGGGCGCGCGATCAAGGCGTCCACGGGGGAAGTGCGCGCCAACC CGCGCTCGCGGAGCGCCACGCTGCGCATTGCGGAGAGGACCGAAGCCCCG TGGCGAAACTGAGCCTCGCGCTGCTCGCCGTGCTGGTGGCCTGCTCGCTG GGGCTGGTCACGTCCCAGCACAAGGCGAGGAAGCTCTTCTCGGAACTCGA GCGCGAGCAGGAGCGCGCCCGCAACCTCGACATCGAATACGGCCAGCTGC AGCTCGAGGCCAGCACCTGGGGCCTGCATTCGCGCGTCGAGAAGATCGCC ACGGGCGCGCTCGCGATGCGCGCCCCGGATCCGCGCCGCGTGCGCCTGGT GAATCCCGCCGCATCGGCCGGGGCCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6266:2478..3505-

>mRNA_P-wetherbeei_contig6266.2.1 ID=mRNA_P-wetherbeei_contig6266.2.1|Name=mRNA_P-wetherbeei_contig6266.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=588bp|location=Sequence derived from alignment at P-wetherbeei_contig6266:2478..3505- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGGGCCCCTCGACATGCGCATGGATCCGACACGCGGGGAATCCGC
GGCGGAGTGGCTGGCCCGGGCGAATGAGTCCGACATCAGGGAGGTGATCA
AGGACTATGGCGAAGAACGGTTTGCTAAACAGATTGCAGCGGCGATTGTT
GCTGCTAGGGCAACCGAGCCTCTCGGGCGCACGCGGCAGCTTGCCCATCT
CGTGGGTGAAGCGGTCCGCACACGCGAGGCCGGGCAGGATCCGGCGACGC
GCACCTTCCAGGCTCTACGGATTTTCATCAATCGGGAGCTTGAGGAAGTG
TCGCTGAGCCTGCCGATCGCCGCGTCGCGGCTCGTGCCCGGCGGGCGCCT
GGCGGTCATCAGCTTCCATTCGCTCGAGGACCGCATCGCCAAGCGGTTCA
TCCGCGACGCCGGCGCGGCCGACCTGCCGCGCGACCTGCCGCTGCGCGCC
GACCAGCTGCCGCAACCGTTGCTCATGCCCGTGGGGCGCGCGATCAAGGC
GTCCACGGGGGAAGTGCGCGCCAACCCGCGCTCGCGGAGCGCCACGCTGC
GCATTGCGGAGAGGACCGAAGCCCCGTGGCGAAACTGA
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