mRNA_P-wetherbeei_contig626.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig626.1.1
Unique NamemRNA_P-wetherbeei_contig626.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig626contigP-wetherbeei_contig626:2..1143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1144
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1044
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.578336-UTR-P-wetherbeei_contig626:1..991683186900.578336-UTR-P-wetherbeei_contig626:1..99Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig626 2..99 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.588971-CDS-P-wetherbeei_contig626:99..11431683186900.588971-CDS-P-wetherbeei_contig626:99..1143Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig626 100..1143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig626.1.1prot_P-wetherbeei_contig626.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig626 100..1143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig626.1.1

>prot_P-wetherbeei_contig626.1.1 ID=prot_P-wetherbeei_contig626.1.1|Name=mRNA_P-wetherbeei_contig626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=348bp
VLALVSLFPRAGQAAGGGGGGAEGLGEGAAPLGREGWRLLGWIYRLLTTI
LGTRSKATAPLVPQAAQLALDTLTECVGSAEASDAGSAGGGGGGGGFPNS
AAVNGDSGAPGSATTGAAALHGHDAIAELYPDFLGLAEQLLTTQWQCFAV
LPPKKHVFPGHHHDAVAASPPPHAEAPPEQRARFAGICAVLHSCVAGDGG
RVPPEAARCGVALLLRVDEANGLFALPFLLEAGWTYRLTLDCLRALAHRA
QPLLAEELAQLAAALGAAAPAAFEEALGALLHEYGGSCNGGGGGGGGLSE
ERKAALRALWSVPGRRAGGAGIGGTADFGRVLNAFCNDLRYYAYAVG*
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mRNA from alignment at P-wetherbeei_contig626:2..1143-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig626.1.1 ID=mRNA_P-wetherbeei_contig626.1.1|Name=mRNA_P-wetherbeei_contig626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1142bp|location=Sequence derived from alignment at P-wetherbeei_contig626:2..1143- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTGGCACTGGTGTCGCTCTTTCCGCGAGCGGGGCAGGCCGCCGGAGG
AGGAGGAGGAGGTGCGGAAGGGCTGGGGGAAGGGGCGGCGCCGCTGGGAA
GGGAGGGCTGGCGGCTTCTCGGTTGGATCTACCGCCTGCTGACGACCATC
CTGGGCACGCGCTCAAAGGCAACGGCGCCGCTGGTGCCGCAGGCAGCGCA
GCTGGCCCTCGACACGCTGACGGAGTGCGTCGGCAGCGCTGAAGCCTCCG
ATGCCGGCAGCGCTGGCGGCGGCGGCGGTGGCGGCGGCTTTCCCAACAGC
GCGGCGGTCAACGGCGACAGCGGAGCGCCAGGATCGGCGACGACGGGGGC
GGCAGCTTTACATGGGCACGACGCCATCGCGGAGCTGTATCCGGACTTTC
TGGGGTTGGCGGAGCAGCTCCTGACGACGCAGTGGCAGTGCTTCGCCGTG
CTGCCGCCGAAGAAGCACGTCTTCCCGGGTCACCACCACGACGCTGTCGC
CGCATCTCCGCCGCCGCACGCCGAGGCACCGCCGGAGCAGCGGGCACGCT
TCGCCGGCATCTGCGCCGTGCTGCACAGCTGCGTGGCGGGCGACGGCGGC
CGTGTGCCACCCGAGGCGGCACGGTGCGGCGTCGCGCTGCTGCTCCGCGT
TGATGAAGCCAACGGCCTCTTCGCGCTGCCGTTCCTGCTCGAGGCCGGAT
GGACATATCGGCTGACACTGGACTGCCTGCGAGCGCTGGCGCACCGCGCG
CAGCCGCTGCTGGCCGAGGAGTTAGCGCAGCTAGCTGCCGCGCTCGGGGC
GGCGGCGCCCGCCGCGTTCGAGGAAGCGCTCGGAGCGCTGCTGCACGAAT
ACGGCGGCAGCTGCAACGGCGGCGGCGGCGGCGGCGGCGGGCTCAGCGAG
GAGCGAAAAGCGGCGCTGCGGGCACTGTGGAGCGTGCCGGGGAGACGGGC
CGGCGGCGCGGGCATCGGCGGCACGGCAGATTTCGGGCGGGTGCTGAACG
CCTTCTGCAACGACCTTCGCTACTACGCCTACGCGGTTGGTTAGCGGCGC
ACATTCGCTCGGAAAAATCTTGACTGATAATAGTTGAAAGTTTACGTGAG
CATTTGGGAGCACTGCTGCTGCCAGTAAGGGAAAAAAGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig626:2..1143-

>mRNA_P-wetherbeei_contig626.1.1 ID=mRNA_P-wetherbeei_contig626.1.1|Name=mRNA_P-wetherbeei_contig626.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1044bp|location=Sequence derived from alignment at P-wetherbeei_contig626:2..1143- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTGGCACTGGTGTCGCTCTTTCCGCGAGCGGGGCAGGCCGCCGGAGG
AGGAGGAGGAGGTGCGGAAGGGCTGGGGGAAGGGGCGGCGCCGCTGGGAA
GGGAGGGCTGGCGGCTTCTCGGTTGGATCTACCGCCTGCTGACGACCATC
CTGGGCACGCGCTCAAAGGCAACGGCGCCGCTGGTGCCGCAGGCAGCGCA
GCTGGCCCTCGACACGCTGACGGAGTGCGTCGGCAGCGCTGAAGCCTCCG
ATGCCGGCAGCGCTGGCGGCGGCGGCGGTGGCGGCGGCTTTCCCAACAGC
GCGGCGGTCAACGGCGACAGCGGAGCGCCAGGATCGGCGACGACGGGGGC
GGCAGCTTTACATGGGCACGACGCCATCGCGGAGCTGTATCCGGACTTTC
TGGGGTTGGCGGAGCAGCTCCTGACGACGCAGTGGCAGTGCTTCGCCGTG
CTGCCGCCGAAGAAGCACGTCTTCCCGGGTCACCACCACGACGCTGTCGC
CGCATCTCCGCCGCCGCACGCCGAGGCACCGCCGGAGCAGCGGGCACGCT
TCGCCGGCATCTGCGCCGTGCTGCACAGCTGCGTGGCGGGCGACGGCGGC
CGTGTGCCACCCGAGGCGGCACGGTGCGGCGTCGCGCTGCTGCTCCGCGT
TGATGAAGCCAACGGCCTCTTCGCGCTGCCGTTCCTGCTCGAGGCCGGAT
GGACATATCGGCTGACACTGGACTGCCTGCGAGCGCTGGCGCACCGCGCG
CAGCCGCTGCTGGCCGAGGAGTTAGCGCAGCTAGCTGCCGCGCTCGGGGC
GGCGGCGCCCGCCGCGTTCGAGGAAGCGCTCGGAGCGCTGCTGCACGAAT
ACGGCGGCAGCTGCAACGGCGGCGGCGGCGGCGGCGGCGGGCTCAGCGAG
GAGCGAAAAGCGGCGCTGCGGGCACTGTGGAGCGTGCCGGGGAGACGGGC
CGGCGGCGCGGGCATCGGCGGCACGGCAGATTTCGGGCGGGTGCTGAACG
CCTTCTGCAACGACCTTCGCTACTACGCCTACGCGGTTGGTTAG
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