mRNA_P-wetherbeei_contig6246.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6246.1.1
Unique NamemRNA_P-wetherbeei_contig6246.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A835YZA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.320e-33
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLAVS 327
            QRDM VGMNE E+++   +LG+KT V YFT+P+EDFAALVRR TF NTDP + + L+ILDG+ ++ P+GV DW++KNM RT E W + +N ++S + LPFF L  S
Sbjct:  198 QRDMLVGMNELELLEDASDLGLKTKVQYFTLPDEDFAALVRRTTFINTDPNEPVSLQILDGMPRLQPFGVTDWHLKNMGRTLEGWYKAFNYKESAHTLPFFKLTAS 303          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A6H5JEK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.760e-28
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    7 IQRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLA 321
            ++R+MH+GMNE E+ + N +L +  +V Y+ VP EDF A++RR T TNT   +TL++E LDG+A++ PYG+ D   K MART EAWM+V+N++  + K PFF L+
Sbjct:  192 MRRNMHIGMNELEIREENDDLDLDASVQYYEVPNEDFGAIIRRTTLTNTHDSETLEIEALDGMARVLPYGLQDLPYKVMARTFEAWMEVHNVDGEEKKAPFFRLS 296          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A7R9U8F5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8F5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.330e-28
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    7 IQRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLA 321
            +QRDM +G NE E+V+T+    IKT++LY++VP EDF  LVR  T TNT  Y+ +DL ILDGLA++ PYG+    +  M RT EAWM VYN+E  +  LP+FH++
Sbjct:   24 VQRDMLIGRNEMEIVETDANSMIKTSILYYSVPNEDFPGLVRTTTITNTADYE-VDLSILDGLAKLVPYGISYGELNAMGRTMEAWMNVYNVEVGNTDLPYFHVS 127          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A812M1S0_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812M1S0_SYMPI)

HSP 1 Score: 112 bits (279), Expect = 1.850e-26
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLA 321
            +RDM +GMNE E+ + N ++G+KT +LYFTVP E+F A+VR+ TFTN      LD+++LDGL ++ P G+    +  M RT EAW  VYN ED D + PFFH++
Sbjct:  108 ERDMLIGMNEMEIREVNHDVGLKTEILYFTVPNEEFPAMVRKVTFTNLGD-TNLDIDVLDGLMKLEPTGIPHENLVTMGRTMEAWKNVYNTEDGDMRRPFFHIS 210          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A812V3R9_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812V3R9_9DINO)

HSP 1 Score: 108 bits (271), Expect = 2.230e-25
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLA 321
            +RDM +GMNE E+ + N ++G+ T VLYFTVP E+F ALVR+ TFTN      L++ +LDGL ++ P G+    +  M RT EAW  VYN ED D + PFFH++
Sbjct:  111 ERDMLIGMNEMEIREINKDVGLATEVLYFTVPNEEFPALVRKVTFTNLGD-TNLEISLLDGLMKLEPTGIPHENLVTMGRTMEAWKNVYNTEDGDTRRPFFHIS 213          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A813IL29_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IL29_POLGL)

HSP 1 Score: 108 bits (270), Expect = 3.040e-25
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLA 321
            QRDM VGMNE E+ +TN E+G+KT VLYFTV  EDF  LVRR TF N +    + +++LDGL ++ P G+ +  +  + RT EAW  V+NM+ SD   PFFH++
Sbjct:  106 QRDMFVGMNELEIHETNSEIGLKTEVLYFTVSNEDFPGLVRRTTFRNLNK-TAMKVDVLDGLMKLEPSGIPNSSLMKIGRTMEAWKNVFNMDASDQCCPFFHVS 208          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A1Q9CYV1_SYMMI (Uncharacterized protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CYV1_SYMMI)

HSP 1 Score: 108 bits (270), Expect = 3.040e-25
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   13 RDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLA 321
            RDM +GMNE E+ + N ++G+KT VLYFTVP E+F ALVR+ +FTN     TL + +LDGL ++ P G+    +  M RT EAW  VYN ED D + PFFH++
Sbjct:  155 RDMLIGMNEMEIREINNDVGLKTEVLYFTVPNEEFPALVRKVSFTNLGD-TTLHISLLDGLMKLEPTGIPHENLVTMGRTMEAWKNVYNTEDGDMRRPFFHIS 256          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A8J5XEN9_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XEN9_DIALT)

HSP 1 Score: 108 bits (269), Expect = 4.160e-25
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLAVS 327
            +RDM +G NE E+ + +   G++TNVLYFTVP++DF+ALVRR T TN      ++LE++DGLA++ P+GV    +++M RT E WM VYN +D   + PFFHL  S
Sbjct:  189 RRDMFIGSNEMEIEEVDEATGLQTNVLYFTVPDQDFSALVRRVTLTNRAD-TPVELEVIDGLAKLEPFGVTVGALQSMGRTMEGWMHVYNYDDELTR-PFFHLVTS 292          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: A0A7S2V718_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V718_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.660e-25
Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLAVS 327
            +RDM VG NE E++D++ ELG+ T+VLY+T+  EDF  L+RR TFTNT   + L L+++DGLA++ PYGV    +K++ RT E WM+VYN+E+S   +P++ L  S
Sbjct:  137 ERDMLVGQNEVEIIDSSEELGLDTSVLYYTISHEDFPGLIRRTTFTNTGE-EELSLDVIDGLAKLEPYGVDYKKMKDIGRTLEGWMKVYNLEESLT-MPWYKLTSS 240          
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Match: UPI001AF83BFB (Cellobiose phosphorylase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI001AF83BFB)

HSP 1 Score: 106 bits (265), Expect = 1.430e-24
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 1
Query:   10 QRDMHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQTLDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHLAVS 327
            QRDMH+GMNE EV++ NP  G++T+VLYF +  E FAAL R+ T  N    Q L +E+LDGL  + PYGV +  +K+++RT EAWM+V N+E   N+ PFF L ++
Sbjct:  105 QRDMHIGMNELEVIERNPARGLETSVLYFNIVNECFAALARKLTIRNIGK-QPLQVEVLDGLPAVIPYGVNNDMLKSISRTIEAWMRVSNVE---NRSPFFTLKMT 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6246.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZA2_9STRA1.320e-3355.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JEK8_9PHAE1.760e-2848.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9U8F5_9STRA7.330e-2851.43Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A812M1S0_SYMPI1.850e-2649.04Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A812V3R9_9DINO2.230e-2549.04Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A813IL29_POLGL3.040e-2550.00Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A1Q9CYV1_SYMMI3.040e-2550.49Uncharacterized protein n=5 Tax=Symbiodinium TaxID... [more]
A0A8J5XEN9_DIALT4.160e-2549.06Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2V718_9STRA5.660e-2549.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001AF83BFB1.430e-2450.00Cellobiose phosphorylase n=1 Tax=Chloroflexi bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6246contigP-wetherbeei_contig6246:2198..3170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog381764.Fnod_0956
Model size327
Max annot lvl200918|Thermotogae
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.36e-22
EggNOG OGsCOG3459@1|root,COG3459@2|Bacteria,2GE0W@200918|Thermotogae
DescriptionGlycosyltransferase 36 associated
Cds size309
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.8993156-CDS-P-wetherbeei_contig6246:2197..22971683186899.8993156-CDS-P-wetherbeei_contig6246:2197..2297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6246 2198..2297 -
1683186899.9113035-CDS-P-wetherbeei_contig6246:2535..25971683186899.9113035-CDS-P-wetherbeei_contig6246:2535..2597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6246 2536..2597 -
1683186899.9222736-CDS-P-wetherbeei_contig6246:3005..31521683186899.9222736-CDS-P-wetherbeei_contig6246:3005..3152Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6246 3006..3152 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.9334054-UTR-P-wetherbeei_contig6246:3152..31701683186899.9334054-UTR-P-wetherbeei_contig6246:3152..3170Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6246 3153..3170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6246.1.1prot_P-wetherbeei_contig6246.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6246 2198..3152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6246.1.1

>prot_P-wetherbeei_contig6246.1.1 ID=prot_P-wetherbeei_contig6246.1.1|Name=mRNA_P-wetherbeei_contig6246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MHVGMNEFEVVDTNPELGIKTNVLYFTVPEEDFAALVRRATFTNTDPYQT
LDLEILDGLAQIFPYGVFDWYIKNMARTTEAWMQVYNMEDSDNKLPFFHL
AVS
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mRNA from alignment at P-wetherbeei_contig6246:2198..3170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6246.1.1 ID=mRNA_P-wetherbeei_contig6246.1.1|Name=mRNA_P-wetherbeei_contig6246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=973bp|location=Sequence derived from alignment at P-wetherbeei_contig6246:2198..3170- (Phaeothamnion wetherbeei SAG_119_79)
AACTCAATCCAGAGGGACATGCACGTGGGCATGAACGAGTTCGAGGTGGT GGACACGAACCCGGAGCTCGGCATCAAGACCAACGTGCTCTACTTCACCG TGCCCGAAGAGGACTTTGCGGCCCTCGTCCGCCGCGCCACCTTCACCAAC ACCGACCCCTACCAGGTAAAGAGATTTACCTCTGTTCAATCATGTTTGCT GTTTCAATCCCCGGATTGATTTGCCTGGCGCGGGCTGTCCGGTACCGCCA AGATGGAGCGATCATCTATTGGCAAAACGAAGGAGGAAGGAAGAAAACAA GTTGTGTGATGGCTGCACACGGTTCAGGCAAGTTGCAGCGGCGATCCGTG GAAACTTAGGTTATGGCGAGTAGTAGGATGGATGCCGTTACGCGTGCGTT CCTCTCCGGTGGCGCCTTTTCAGAGGAGGGTCGTAGTATCTATCGTTTTG GGTGTCATATTCCCATGACCACGGCTTCAGTCTTTATCTTGTGCGGCAAG GGCAAGCCCCACCCGCCCCGGCATTGCGCGCTCACTGCCTCTCCCGTCCG CCCACCCGTCCGCCTGAACCCAGACGCTGGACCTGGAGATCCTGGATGGC CTGGCCCAGATCTTCCCCTACGGCGTCTTCGACTGGTGCGTGCAGTGGCC CTGGCCTGTTTTTGAAGCGTCCTATACTGTATGCAGTTCCTGTCTTAAAT TGTGGCTGCAATTTGGGAAAGACTTCCCGTAATTCATAAGCCGTAGCAGA GGGGGGCGCTCACCATTTGTTGCCCCATTGCGTAACCATTGACCATCATG CTTTCGGTTACTGATGGAAACTGACCTAACGATTTCCCGTCGGCTCGACG GCGGCGGCAATGGCCGGCGGCAGGTACATCAAGAACATGGCGCGGACGAC GGAGGCATGGATGCAGGTGTACAACATGGAGGACTCCGACAACAAGCTGC CCTTCTTCCACCTTGCCGTCTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6246:2198..3170-

>mRNA_P-wetherbeei_contig6246.1.1 ID=mRNA_P-wetherbeei_contig6246.1.1|Name=mRNA_P-wetherbeei_contig6246.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig6246:2198..3170- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGTGGGCATGAACGAGTTCGAGGTGGTGGACACGAACCCGGAGCT
CGGCATCAAGACCAACGTGCTCTACTTCACCGTGCCCGAAGAGGACTTTG
CGGCCCTCGTCCGCCGCGCCACCTTCACCAACACCGACCCCTACCAGACG
CTGGACCTGGAGATCCTGGATGGCCTGGCCCAGATCTTCCCCTACGGCGT
CTTCGACTGGTACATCAAGAACATGGCGCGGACGACGGAGGCATGGATGC
AGGTGTACAACATGGAGGACTCCGACAACAAGCTGCCCTTCTTCCACCTT
GCCGTCTCT
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