mRNA_P-wetherbeei_contig6240.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6240.1.1
Unique NamemRNA_P-wetherbeei_contig6240.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.460e-22
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 TGVGDEVWVVCELTPPGSLRECLRRAPRALSDGAKRRILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSR-------TVAALTGTETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILTEE 396
            T + D + +V EL   G LR  LR   + L +   RRI+ ++  GMA+LHS D  H +LK++NV L     AKI DFG SR       T  A   T +    Q +  WSAPE+L+  G  + SDVYSFG+VVWE+++ E
Sbjct:  749 TSLPDRMVLVMELLSGGDLRTLLRNYQQPLPEEQSRRIIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTNSTGLATYTTRSSPGTQMSLAWSAPEVLESGGSTRASDVYSFGIVVWEVVSGE 887          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.270e-22
Identity = 57/139 (41.01%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    1 TGVGDEVWVVCELTPPGSLRECLRRAPRALSDGAKRRILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSR-------TVAALTGTETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILTEE 396
            T + D + +V EL   G LR  L    +   +   RRI+ +V  GMA+LHS D  H +LK++NV L     AKI DFG SR       T  A   T + R    +  WSAPE+L+ EG   ESDVYSFG+V WE+++++
Sbjct:  186 TCLPDRLILVMELLSGGDLRTLLSSCDQPFPEEQSRRIIGDVCSGMAFLHSKDTVHGDLKSANVLLDGAGRAKIGDFGTSRWAQHTNSTGLATYTTRSSRSTPMSLAWSAPEVLEAEGSTYESDVYSFGIVAWEVISKK 324          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A0A6H5JSI8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.280e-21
Identity = 56/139 (40.29%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 TGVGDEVWVVCELTPPGSLRECLRRAPRALSDGAKRRILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGT-------ETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILTEE 396
            T + D + +V EL   G L   LR++ +AL +   R I+ ++  GMA+LHS +  H +LK++NV L     AKI+DFG SR    +  T       ++ +  Q +  WSAPE+L  E    ESDVYSFG+VVWE+L+ E
Sbjct:  696 TSLPDRMVLVMELLAGGDLLTLLRKSKKALPEEQSRLIIRDICTGMAFLHSKNTVHGDLKSANVLLDDIGRAKIADFGTSRWTQTINSTGLTTYTTKSSQTTQMSIAWSAPEVLDSEKSSYESDVYSFGIVVWEVLSRE 834          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A0A225WP35_9STRA (TKL protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WP35_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.230e-20
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  109 RILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGTETGRRWQETAP-----WSAPEILQREGYVKESDVYSFGVVVWEILTEEV 399
            R+ +++A GMAYLH   + HR+LK+SNV LA+D TAKISDFGLS  +      E GR    TA      W APE+++ E Y  ++DVYSF VV+WE+L +EV
Sbjct:  129 RLATDMAQGMAYLHEHSVMHRDLKSSNVLLAADGTAKISDFGLSCVM------ELGRSADLTAETGTYGWMAPEVIRHEPYSSKADVYSFAVVLWELLAKEV 224          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A0A2P4Y5S3_9STRA (TKL protein kinase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5S3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.900e-20
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  109 RILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGTETGRRWQETAP-----WSAPEILQREGYVKESDVYSFGVVVWEILTEEV 399
            R+ +++A GMAYLH   + HR+LK+SNV LA+D TAKISDFGLS  +      E GR    TA      W APE+++ E Y  ++DVYSF VV+WE+L ++V
Sbjct:  124 RLATDMATGMAYLHDHSVMHRDLKSSNVLLAADGTAKISDFGLSCIL------EMGRSADLTAETGTYGWMAPEVIRHEPYSSKADVYSFAVVLWELLAKDV 219          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A0A1X6P5T5_PORUM (Protein kinase domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5T5_PORUM)

HSP 1 Score: 91.7 bits (226), Expect = 6.500e-19
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   25 VVCELTPPGSLRECLRRAPRALSDGAKRRILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGTETGRRWQETAPWSAPEILQREG-YVKESDVYSFGVVVWEILT 390
            V+ E    G+L + L +A  A +    +RILS VAGGMAYLH+  + HR+LK++NV L    TAK+SDFGL+  VA   G         T  + APE+L     +   SDVY+FG+++WE++T
Sbjct: 1121 VLTEYMSRGTLFDVLHKARVAPTWPVVKRILSHVAGGMAYLHAQSLVHRDLKSANVLLDGSFTAKVSDFGLATAVATAAGESAAGGLCGTLQYLAPEVLAAVAPHTPASDVYAFGILIWELVT 1243          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: L8GZS0_ACACA (Guanylate cyclase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZS0_ACACA)

HSP 1 Score: 90.1 bits (222), Expect = 2.280e-18
Identity = 50/126 (39.68%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   25 VVCELTPPGSLRECLRRAPRALSDGAKRRILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAA-LTGTETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILTEEV 399
            +V E    G+L+E L  +   L    + R+L   A G+AYLHS DI HR++K SN+ +  +   K++DFG +R      T T  G     T  W+APE+++ E Y +++DVYSFG++VWE+LT +V
Sbjct: 1517 IVTEFVQQGALKEILADSAVRLPWERRLRVLRSAAVGLAYLHSRDIIHRDVKPSNLLVDENWNVKVADFGFARIKEDNATMTRCG-----TPCWTAPEVIRGERYSEKADVYSFGIIVWEVLTRKV 1637          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A0A2I0A7A9_9ASPA (Serine/threonine-protein kinase HT1 n=7 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0A7A9_9ASPA)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-18
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   19 VW-VVCELTPPGSLRECL-RRAPRALSDGAKRRILSEVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGT--ETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILT 390
            VW +V E    GS+R+ L RR  R++      R   +VA GMAY+H L++ HR+LK+ N+ +  D + KI+DFG++R      G   ETG     T  W APE++Q   Y ++ DVYSFG+V+WE++T
Sbjct:  205 VWCIVTEYAKGGSVRQFLMRRQNRSVPLKIAVRQALDVARGMAYVHGLNLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETG-----TYRWMAPEMIQHRPYTQKVDVYSFGIVLWELVT 327          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A2E1W1_TRIVA (TKL family protein kinase n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2E1W1_TRIVA)

HSP 1 Score: 89.4 bits (220), Expect = 4.140e-18
Identity = 52/126 (41.27%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   25 VVCELTPPGSLRECLRRAPRALSDGAKRRILS-EVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGTETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILTEEV 399
            +V E    G+L E LR+A     DG ++ I +  +A GMAY+HS +I HR+LK+ N+ L SD   KI DFG+SR +    G +       T  W APE+L    Y  ++DVYS+ +V+WE+LT++V
Sbjct:  297 LVTEFMSNGNLFERLRKATTPF-DGTRKTICALGIAEGMAYMHSKNIMHRDLKSLNILLDSDDFPKICDFGMSRNIE---GADVLTGGIGTYRWMAPEVLDSRPYTFKADVYSYAIVLWELLTQDV 418          
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Match: A0A7S2QVB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVB6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-17
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  121 EVAGGMAYLHSLDIQHRNLKASNVFLASDTTAKISDFGLS----RTVAALTGTETGRRWQETAPWSAPEILQREGYVKESDVYSFGVVVWEILTEEV 399
            ++A GMAYLHS D+ HR+LK++NV L  +  AKI+DFGLS    R+   LT  ETG     T  W APE+++ E Y   +DVYSFG+V+W+++T +V
Sbjct:  290 DIATGMAYLHSNDVIHRDLKSTNVLLDGNGRAKIADFGLSVFAPRSGQELTA-ETG-----TYKWMAPEVIRHESYSSNADVYSFGIVLWQLITRDV 380          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6240.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRE9_ECTSI1.460e-2241.73Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D8LAU2_ECTSI3.270e-2241.01Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JSI8_9PHAE1.280e-2140.29Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A225WP35_9STRA2.230e-2050.00TKL protein kinase n=1 Tax=Phytophthora megakarya ... [more]
A0A2P4Y5S3_9STRA7.900e-2049.02TKL protein kinase n=2 Tax=Phytophthora palmivora ... [more]
A0A1X6P5T5_PORUM6.500e-1942.28Protein kinase domain-containing protein n=1 Tax=P... [more]
L8GZS0_ACACA2.280e-1839.68Guanylate cyclase n=1 Tax=Acanthamoeba castellanii... [more]
A0A2I0A7A9_9ASPA3.500e-1841.41Serine/threonine-protein kinase HT1 n=7 Tax=Orchid... [more]
A2E1W1_TRIVA4.140e-1841.27TKL family protein kinase n=1 Tax=Trichomonas vagi... [more]
A0A7S2QVB6_9STRA1.500e-1748.45Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6240contigP-wetherbeei_contig6240:1773..2577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7F2
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,LRR_8,Pkinase,Pkinase_Tyr
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons3
Evalue4.32e-25
EggNOG OGsCOG0515@1|root,COG4886@1|root,KOG0192@2759|Eukaryota,KOG0619@2759|Eukaryota
EC2.7.11.1
Descriptionregulation of response to stimulus
Cds size399
COG categoryU
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.5531507-CDS-P-wetherbeei_contig6240:1772..19521683186899.5531507-CDS-P-wetherbeei_contig6240:1772..1952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6240 1773..1952 -
1683186899.5650253-CDS-P-wetherbeei_contig6240:2126..22351683186899.5650253-CDS-P-wetherbeei_contig6240:2126..2235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6240 2127..2235 -
1683186899.5741792-CDS-P-wetherbeei_contig6240:2467..25771683186899.5741792-CDS-P-wetherbeei_contig6240:2467..2577Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6240 2468..2577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6240.1.1prot_P-wetherbeei_contig6240.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6240 1773..2577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6240.1.1

>prot_P-wetherbeei_contig6240.1.1 ID=prot_P-wetherbeei_contig6240.1.1|Name=mRNA_P-wetherbeei_contig6240.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
TGVGDEVWVVCELTPPGSLRECLRRAPRALSDGAKRRILSEVAGGMAYLH
SLDIQHRNLKASNVFLASDTTAKISDFGLSRTVAALTGTETGRRWQETAP
WSAPEILQREGYVKESDVYSFGVVVWEILTEEV
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mRNA from alignment at P-wetherbeei_contig6240:1773..2577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6240.1.1 ID=mRNA_P-wetherbeei_contig6240.1.1|Name=mRNA_P-wetherbeei_contig6240.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=805bp|location=Sequence derived from alignment at P-wetherbeei_contig6240:1773..2577- (Phaeothamnion wetherbeei SAG_119_79)
ACAGGCGTTGGGGACGAGGTGTGGGTGGTGTGCGAGCTGACGCCACCTGG GAGCCTCCGTGAATGCCTGAGACGCGCGCCACGCGCCCTCTCCGACGGCG CCAAGCGTAGGTGAGGCAACTACGTAGCAGAGATGTGTGAAGCTTAGATC TCAGCGTTGTACGGTGTTTCCGCTGATGATTCCTGAATCAATTGTCCGGA TGAACTGGTCCTGGCGGGAAATTCTGCTTGGCTTTTCTCCTACCACATCG TTCCTACAACTTTTGAAAGTTCTTTGGCAAGTTTGTTGTGCAAGAATGCA GTTAGTTGATGCCTAACTTGTTGCCTCCCTTTTTCGGTCCAGGATTCTGT CGGAGGTGGCAGGCGGAATGGCGTATCTCCACTCGCTCGACATTCAGCAC CGCAACCTGAAAGCCTCTAACGTCTTCCTCGCTTCCGACACGACTGCCAA GGTGCGCGTGCACGGCAGAGCAGAATTGGCTGGAGGAAAAGCGGGGGCGG TGTTATCTGGCAGTTTTGCGATCGACGGTGGCGGCGACAACTAGGAGCGA CAGGCGGTGGACGACCGCTCTCAACTGCCCGCCGTAACCGAGACGAAACG AAACGAAACCTTATTCCTACAACAGATCTCGGACTTCGGCCTGAGCCGGA CGGTAGCGGCGCTGACAGGCACGGAGACCGGCCGGCGGTGGCAGGAGACA GCGCCGTGGTCCGCCCCCGAAATCCTTCAGCGGGAGGGCTATGTGAAGGA GAGCGACGTGTACAGCTTCGGCGTCGTCGTCTGGGAGATCTTGACGGAAG AGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6240:1773..2577-

>mRNA_P-wetherbeei_contig6240.1.1 ID=mRNA_P-wetherbeei_contig6240.1.1|Name=mRNA_P-wetherbeei_contig6240.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig6240:1773..2577- (Phaeothamnion wetherbeei SAG_119_79)
ACAGGCGTTGGGGACGAGGTGTGGGTGGTGTGCGAGCTGACGCCACCTGG
GAGCCTCCGTGAATGCCTGAGACGCGCGCCACGCGCCCTCTCCGACGGCG
CCAAGCGTAGGATTCTGTCGGAGGTGGCAGGCGGAATGGCGTATCTCCAC
TCGCTCGACATTCAGCACCGCAACCTGAAAGCCTCTAACGTCTTCCTCGC
TTCCGACACGACTGCCAAGATCTCGGACTTCGGCCTGAGCCGGACGGTAG
CGGCGCTGACAGGCACGGAGACCGGCCGGCGGTGGCAGGAGACAGCGCCG
TGGTCCGCCCCCGAAATCCTTCAGCGGGAGGGCTATGTGAAGGAGAGCGA
CGTGTACAGCTTCGGCGTCGTCGTCTGGGAGATCTTGACGGAAGAGGTG
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