mRNA_P-wetherbeei_contig6232.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6232.1.1
Unique NamemRNA_P-wetherbeei_contig6232.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6232.1.1 vs. uniprot
Match: A0A4R2HJS2_9ACTN (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Kribbella sp. VKM Ac-2572 TaxID=2512223 RepID=A0A4R2HJS2_9ACTN)

HSP 1 Score: 58.5 bits (140), Expect = 6.500e-8
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:    1 AGKTAVVFGSTGNVGRSAVIAFLAAGAKVIAPVRDAGRVGPKVQPHVSEAAFANLVEIVADVSTDVGKADILAAT-DGGKLIDHVVSSFGPWWDLGPL 291
            AG+T V+ G TGN+G   V A +AAGA V+ P RDAGR+  +V     +     LV I  D  T  G   I   T D      HVV+S G W+   P+
Sbjct:   10 AGQTTVILGGTGNIGEGIVRAHIAAGATVVVPSRDAGRI--EVVRQALDGGADRLVGIEGDTQTFDGMTKIAEETVDRAGPPTHVVASIGGWYGGQPV 105
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BLAST of mRNA_P-wetherbeei_contig6232.1.1 vs. uniprot
Match: W5TVP3_9NOCA (Putative oxidoreductase, SDR family n=2 Tax=Nocardia nova TaxID=37330 RepID=W5TVP3_9NOCA)

HSP 1 Score: 50.4 bits (119), Expect = 5.270e-5
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    4 GKTAVVFGSTGNVGRSAVIAFLAAGAKVIAPVRDAGRVGPKVQPHVSEAAFANLVEIVADVSTDVGKADILAATD--GGKLIDHVVSSFG 267
            G+TA+V GST N+GRS  IAF AAGA VI   RD  R    V    +    A+ V    D S +  +A   AAT+  GG+ ID +V++ G
Sbjct:   18 GRTALVTGSTSNIGRSVAIAFAAAGAHVIVSGRDDTRGAAVVAEIRAAGGAADYVHADLDGSIEASRALATAATELLGGR-IDILVNNAG 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6232.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4R2HJS2_9ACTN6.500e-839.803-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]
W5TVP3_9NOCA5.270e-542.22Putative oxidoreductase, SDR family n=2 Tax=Nocard... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6232contigP-wetherbeei_contig6232:86..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380354.JIAN01000005_gene2391
PFAMsadh_short_C2
Model size318
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.46e-09
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,2INCV@201174|Actinobacteria
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size318
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.8800411-CDS-P-wetherbeei_contig6232:85..4031683186898.8800411-CDS-P-wetherbeei_contig6232:85..403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6232 86..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6232.1.1prot_P-wetherbeei_contig6232.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6232 86..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6232.1.1

>prot_P-wetherbeei_contig6232.1.1 ID=prot_P-wetherbeei_contig6232.1.1|Name=mRNA_P-wetherbeei_contig6232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
AGKTAVVFGSTGNVGRSAVIAFLAAGAKVIAPVRDAGRVGPKVQPHVSEA
AFANLVEIVADVSTDVGKADILAATDGGKLIDHVVSSFGPWWDLGPLSGI
GESVN*
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mRNA from alignment at P-wetherbeei_contig6232:86..403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6232.1.1 ID=mRNA_P-wetherbeei_contig6232.1.1|Name=mRNA_P-wetherbeei_contig6232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig6232:86..403- (Phaeothamnion wetherbeei SAG_119_79)
GCAGGAAAGACGGCCGTTGTGTTCGGCAGCACCGGCAACGTCGGCCGCAG
CGCCGTCATCGCCTTCCTCGCCGCCGGCGCCAAAGTAATTGCGCCGGTGC
GCGACGCCGGCCGTGTCGGCCCAAAGGTGCAGCCCCATGTCTCGGAAGCC
GCCTTCGCCAATTTGGTGGAGATTGTCGCTGACGTTTCGACGGATGTGGG
CAAAGCCGACATCCTGGCGGCAACGGACGGCGGCAAGCTGATTGACCACG
TCGTGTCGTCGTTTGGCCCGTGGTGGGACCTTGGACCGCTCAGCGGCATC
GGTGAGTCAGTCAATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6232:86..403-

>mRNA_P-wetherbeei_contig6232.1.1 ID=mRNA_P-wetherbeei_contig6232.1.1|Name=mRNA_P-wetherbeei_contig6232.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig6232:86..403- (Phaeothamnion wetherbeei SAG_119_79)
GCAGGAAAGACGGCCGTTGTGTTCGGCAGCACCGGCAACGTCGGCCGCAG
CGCCGTCATCGCCTTCCTCGCCGCCGGCGCCAAAGTAATTGCGCCGGTGC
GCGACGCCGGCCGTGTCGGCCCAAAGGTGCAGCCCCATGTCTCGGAAGCC
GCCTTCGCCAATTTGGTGGAGATTGTCGCTGACGTTTCGACGGATGTGGG
CAAAGCCGACATCCTGGCGGCAACGGACGGCGGCAAGCTGATTGACCACG
TCGTGTCGTCGTTTGGCCCGTGGTGGGACCTTGGACCGCTCAGCGGCATC
GGTGAGTCAGTCAATTAG
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