mRNA_P-wetherbeei_contig6228.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6228.1.2
Unique NamemRNA_P-wetherbeei_contig6228.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6228.1.2 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.490e-45
Identity = 107/234 (45.73%), Postives = 140/234 (59.83%), Query Frame = 3 
Query:  132 ATAKIAKDGTVDLQRPEKVQSVFDELQKAAVSMYKDAVGTGTTKEAA--AVAAPVVDKAK-LEESLETLLKGSSFSPAAMPAAQKQQLVQAVASLEASYPAGAAPLADPALSGQWSLVYSSSGGIFKAMLGKKRSKLFRVVDPLQEVDAAACTVTNTCGLRLRFTPLTFAMSQIGSYVGKGGSAVEIDF---KRGRLARILAPFRKGSVSASLTYVSDTWRICRSQGCILAFRK 815
            A A+    GTV L RP++VQ VFD++QK AV  YK + G  +  + A     AP+ + AK LE  LE+LL  S+F P  +   +K QLV A+ ++E SYPAGA PLADPALSGQWS+VYSSS  +   ++    S  F+  D  Q VD  A +V N C  RLR TPL   +++ GSY       V ++    K+G L R+L   R G V A +TY+SD WRICR+ G  LAFRK
Sbjct:  217 AVAEEGSSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQDAEGGAVAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVEMPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRK 450
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BLAST of mRNA_P-wetherbeei_contig6228.1.2 vs. uniprot
Match: A0A836CKA5_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.000e-44
Identity = 128/307 (41.69%), Postives = 161/307 (52.44%), Query Frame = 3 
Query:   33 VAKDIAEVEATAEAAVKELVAKAVAAAPVPAMPAT-AKIAKDGTVDLQRPEKVQSVFDELQKAAVSMYK---DAVGTGTTKE----AAAVAA--------------PVVDKAKLEESLETLLKGSSFSPAAMPAAQKQQL------------------VQAVASLEASYPAGAAPLADPALSGQWSLVYSSSGGIFKAMLGKKRSKLFRVVDPLQEVDAAACTVTNTCGLRLRFTPLTFAMSQIGSYV-----GKGGSAVEIDFKRGRLARILAPFRKGSVSASLTYVSDTWRICRSQGCILAFRKV 818
            VA  + E  AT  +  K + + AVA    P   AT AK      +DLQRP +VQ+V + LQK AV+MYK    A   G  ++    A AVAA              P   +A LE+ LE LLK S  SPA M    +  L                  V  + +LEAS P GA PL  P L+G W+LVYSSSG +FKA LGKKRS  F+V  P Q VDAAA TV N+  LRLR TPL     Q G++      G  G+   ++F RG   R    FR+G+ + ++TY+S  WRICRS G +LAFRKV
Sbjct:  171 VAAPVQEASATVGSEAKAVPSAAVATPAAPPAKATPAKQQSKAGLDLQRPAQVQNVIESLQKRAVAMYKGAAQAASAGFVRDEDVPAVAVAAXXXXVADAMPEIAPPRASEAMLEKRLEDLLKTSDMSPARMSEQDQAALTTLHKSTRLTTHLHATHQVTTLEALEASTPPGAHPLHSPLLTGDWALVYSSSGSVFKAALGKKRSAFFKVSSPTQSVDAAAGTVLNSALLRLRLTPLRLRARQAGTFTLDKGSGAPGATAIVNFARGGFGRFAKLFRRGTAAVTVTYLSTGWRICRSDGVVLAFRKV 477
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BLAST of mRNA_P-wetherbeei_contig6228.1.2 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 9.250e-20
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 3 
Query:  156 GTVDLQRPEKVQSVFDELQKAAVSMYKDAVGTGTTKEAA--AVAAPVVDKAK-LEESLETLLKGSSFSPAAMPAAQKQQLVQAVASLEASYPAGAAPLADPALSGQWSLVYSSSG-GIFKAMLG 515
            GTV L RP++VQ VFD++QK AV  YK + G  +  + A    AAP+ + AK LE  LE+LL  S+F P  +   +K QLV A+ ++E SYPA A PLADPALSGQWS+VYSSS  G+ +  +G
Sbjct:  196 GTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQDAEGGAAAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSSSSRGLGRLRIG 319
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6228.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE3.490e-4545.73PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A836CKA5_9STRA2.000e-4441.69PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
D8LNG8_ECTSI9.250e-2050.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6228contigP-wetherbeei_contig6228:179..3518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1767
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003920.1
Cds size834
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6228.1.2prot_P-wetherbeei_contig6228.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6228 181..2587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.6677954-UTR-P-wetherbeei_contig6228:178..1801683186898.6677954-UTR-P-wetherbeei_contig6228:178..180Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6228 179..180 +
1683186898.7509995-UTR-P-wetherbeei_contig6228:2587..35181683186898.7509995-UTR-P-wetherbeei_contig6228:2587..3518Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6228 2588..3518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.6806993-CDS-P-wetherbeei_contig6228:180..3631683186898.6806993-CDS-P-wetherbeei_contig6228:180..363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 181..363 +
1683186898.6909273-CDS-P-wetherbeei_contig6228:760..8751683186898.6909273-CDS-P-wetherbeei_contig6228:760..875Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 761..875 +
1683186898.7042394-CDS-P-wetherbeei_contig6228:1081..11301683186898.7042394-CDS-P-wetherbeei_contig6228:1081..1130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 1082..1130 +
1683186898.7147524-CDS-P-wetherbeei_contig6228:1350..15041683186898.7147524-CDS-P-wetherbeei_contig6228:1350..1504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 1351..1504 +
1683186898.7245393-CDS-P-wetherbeei_contig6228:1835..19641683186898.7245393-CDS-P-wetherbeei_contig6228:1835..1964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 1836..1964 +
1683186898.7324326-CDS-P-wetherbeei_contig6228:2182..23651683186898.7324326-CDS-P-wetherbeei_contig6228:2182..2365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 2183..2365 +
1683186898.740621-CDS-P-wetherbeei_contig6228:2566..25871683186898.740621-CDS-P-wetherbeei_contig6228:2566..2587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6228 2567..2587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6228.1.2

>prot_P-wetherbeei_contig6228.1.2 ID=prot_P-wetherbeei_contig6228.1.2|Name=mRNA_P-wetherbeei_contig6228.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=278bp
MASVAAVIEEVAKDIAEVEATAEAAVKELVAKAVAAAPVPAMPATAKIAK
DGTVDLQRPEKVQSVFDELQKAAVSMYKDAVGTGTTKEAAAVAAPVVDKA
KLEESLETLLKGSSFSPAAMPAAQKQQLVQAVASLEASYPAGAAPLADPA
LSGQWSLVYSSSGGIFKAMLGKKRSKLFRVVDPLQEVDAAACTVTNTCGL
RLRFTPLTFAMSQIGSYVGKGGSAVEIDFKRGRLARILAPFRKGSVSASL
TYVSDTWRICRSQGCILAFRKVTATEA*
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mRNA from alignment at P-wetherbeei_contig6228:179..3518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6228.1.2 ID=mRNA_P-wetherbeei_contig6228.1.2|Name=mRNA_P-wetherbeei_contig6228.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3340bp|location=Sequence derived from alignment at P-wetherbeei_contig6228:179..3518+ (Phaeothamnion wetherbeei SAG_119_79)
AGATGGCGTCAGTGGCGGCGGTGATTGAGGAGGTGGCGAAGGACATTGCT
GAGGTGGAGGCCACCGCCGAAGCCGCCGTCAAGGAACTCGTGGCCAAGGC
TGTGGCGGCGGCGCCCGTGCCTGCCATGCCGGCGACGGCAAAGATCGCCA
AGGATGGGACCGTCGACCTCCAGCGGCCGGAGAAGGTGAGGAGTGTGTTG
AATGAATGGTGGGCAGAGGTGACAGTGACCGCGGGCAGCGGTGATAGTGA
GAGTGGGCAGCAGTGACGGGGGCAGCGGTGATAGTGACAGTGGGCAGCGG
TGACGGCGGCAGCGGTGACGGCGGGCAGGGGTGGGGGCGGGCAGCGCTGG
CGGCGGGCAACAATGGCTGCGGGCAGTGGAGGCTGTACCAGTTTGCGTCG
CTTTGGCCTGCCTGTTGAAGCTGCGCAAGAGCAGTGCTGGGCGATGGAAA
AACAGGGATTGACTTACCTCTTGCTTTCCAATGTCCTCCTTTGCTCCGCT
GCTGCCGCCTACTGCCTTCGCGTCCTCCCTCGGGCCCGCCTTCCCGACGC
TCTGCCACTCCACTCCCCTCTCCCCTCTGCAGGTGCAGAGCGTGTTTGAC
GAGCTGCAGAAGGCCGCAGTGTCCATGTACAAGGATGCCGTCGGCACGGG
GACCACCAAGGAGGCGGCGGCGGTCGCCGCGCCCGTCGTGGATAAGGGTC
AGTCGAGTGCTTTTTGCTTGGCACTTTTACTTTCTTGTTAACGCCTTTCA
TGGCTTGTTGGCAGTGAGTTCACACTGAGAGCTTGCCGTTGCAGCCGGGT
TTGTACTTCCTTCAGCGCAGCAGGGTTGTCCTTTTCCTTCCCCTCCCATC
TTCTGAGTTCTACACCGCGCTGCTTGGTGTCTTCTGCCACACGCTGTGCG
CAGCCAAGCTGGAGGAGAGCCTCGAGACCTTGCTCAAGGGGAGCAGTTTT
AGGTGAGGAAACAGGCATAAACCAGTGTTACTTCGCGCGGATCTCCTTTG
GTGACGGCACGGCTTCCCATTGTCGACGCGTTGCACCTTGTGCATGCTCT
CTCTTGATGTCCGTCTACGGCCTTTAGTTTGAATTTTCTCTTCTTTCGTC
TGGCCTTCCTTCCTGTTTCCGCCTTGCCTGCCCGGCCCGCCCGCCTCGCT
GCGTTCTTCCCTTTCAAACCAGCCCGGCGGCGATGCCGGCGGCGCAGAAG
CAGCAGCTGGTGCAGGCGGTGGCGTCGCTCGAGGCGTCGTACCCGGCGGG
CGCGGCGCCATTGGCCGACCCGGCGTTGTCGGGGCAGTGGAGCCTGGTCT
ACAGCTCCTCAGGCGGCATCTTCAAAGTACGCATCTGAGACAGCCCGGCA
TGATCAGGCCCAGCCCAGCCTAGAGCAGGAGCAGCTTGACTGCGTTGGGG
AGTCTGGTTGGGTTGTCCGATCTGGCGTCGGATGAGATGGGAGGAGAGGT
TTTGCTTGCGAGTCTGTCAGGTTTGAGAGGATATTGCGTAGTTCCCCCCG
ATTTGAAAGATATGTTATGAGGCTAATTGGCGTGGCTGTTTGGCGAAACC
GAGACGACTATTTGTGACAGCGTACCATTCTGGATCCCCTTTATTTCCGA
CGTTCCCTGTTCCTTGCGGTGGCGCCGCTTCGCTCCGCGCCTATATGCTC
CCCGCAGGCGATGCTTGGGAAGAAACGGTCGAAGCTGTTCCGCGTGGTAG
ATCCGCTGCAAGAGGTGGATGCTGCCGCCTGCACTGTCACCAACACCTGC
GGCCTTCGCCTGCGCTTCACGCCCCTCACGTTCGCGGTGAGTTGATGAAG
ATGCCGGGGTTTCGGGTGTAGGGTGCCCAGTTGAAGGCGAGTTTGAGGGA
AAAAAGCTGCGGATTTTTGTGTTGTATGCAGTCTTTCGGAGTGTATGCGC
GGGATCAATGCTGAGCGCGCTTCTCGTCATTGCTTGACGCGTCGTCGCTT
GGCATCTGTCGCACTCCGGCTTGCCCCGTCGCCTGCCTCCACCGATGCCA
ACAGATGTCGCAAATTGGGAGCTACGTCGGCAAGGGCGGCTCCGCGGTGG
AGATCGACTTCAAGCGCGGCCGGTTGGCGCGCATCCTTGCGCCCTTCCGC
AAGGGATCGGTCTCGGCATCCCTTACGTACGTTTCGGACACCTGGCGGAT
ATGCCGCTCCCAGGGCTGCATCCTGGCCTTCCGCAAGGTGAGGGAGCCAG
CCAAACAATCCACTGAGTAGCTGCCATCGGCGGTACGCGGTCCGCCCAGA
CTTGGCTTAGCCTGCCACTGTGGTGTTTGAATGTGGCATCAATTGTGGCC
GAGAACTTGTGACCTACTGCTGTTGTGCAATGCGCCGTCTTCGAGTACCA
ATGATTACGAATCCCATCGGCGTGTCTCGGTCGCGCAGGTCACGGCGACG
GAAGCCTAGGAACGTGACGATGCGGGAGCGCACGGCGACGAGCGGCGAGG
CGTCTGCCAAGTCGGCCCGGAAAGCTCAGGGGAACGGTAGATGCCGTGGC
GCACTCGTTGCACCGATTTTGATGAACAGTGGCCATGGAGGCGGCGGTGG
TCATGGTTCACTGAGGTGGTGGCGGCAGCAGTTGCGGCACTTGCGGCGGT
AACTGTGGTGACACTGCTCGGCGGCGCGACAGGAGCGGAGATAGAGGCTA
TTGCGGCGGCAGCAATGAAGGCGGTGACGGCGGCAGCCGCGTCCTCAGTG
GCGTGCGGTTAAGGGAAGTGTGCGACTCATAAAGAGAAATCAGCCCAGAA
ACGGGCGCATTTGAGTTGATTTGTGTCGAAAGCGGGGGCGTCGCCTGCCA
ACATAAGGCGCTCCCGACAGAGGCGGCGGCGGTCTCGAATCGGCAGGCGA
CATGTATTTGGAGTCACCGTCACCACCGCGGTTGAGGCCGGCGACGGTGA
GTGCTGCGCAGCCTCCTTTTCGGGGGAAGATTCCGCGACCGACGATGATG
CCGTTCCGCGCCTCGTTCTCGTCGCTTCGTGTTCAATTCGCAAGAATTCG
AGTGGAGAGTGCCCACATGGCCATCGACGCCTGTCGCGCAGCAAGGAGAG
CGACGAATGAATGCATGGCCGGCCCGACCGTTGGGCGGCGGCGGCTGACG
CGCCGTGCGGCAGAGCTGTTTTAAGGCGGCGTGGCAGCCAAGGAAGGGGT
GCCCGCCCTCGTGTCTTTTGCACACCCCGCCGGCCGCGTGCGGCACGTTC
TGGACTCGCTTCACGGGTTTCCAGCCCTCGTTTGCGGGGGCGCGCGTCAT
GCCTCGGGCCGTGCATGACGGGCGTTTCATAGCCTGAAAAGGCGGCCGGC
GGGGGGGGACTTGGGGGAGTTTGAGGTGGGGGCGGGTTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6228:179..3518+

>mRNA_P-wetherbeei_contig6228.1.2 ID=mRNA_P-wetherbeei_contig6228.1.2|Name=mRNA_P-wetherbeei_contig6228.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig6228:179..3518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCAGTGGCGGCGGTGATTGAGGAGGTGGCGAAGGACATTGCTGA
GGTGGAGGCCACCGCCGAAGCCGCCGTCAAGGAACTCGTGGCCAAGGCTG
TGGCGGCGGCGCCCGTGCCTGCCATGCCGGCGACGGCAAAGATCGCCAAG
GATGGGACCGTCGACCTCCAGCGGCCGGAGAAGGTGCAGAGCGTGTTTGA
CGAGCTGCAGAAGGCCGCAGTGTCCATGTACAAGGATGCCGTCGGCACGG
GGACCACCAAGGAGGCGGCGGCGGTCGCCGCGCCCGTCGTGGATAAGGCC
AAGCTGGAGGAGAGCCTCGAGACCTTGCTCAAGGGGAGCAGTTTTAGCCC
GGCGGCGATGCCGGCGGCGCAGAAGCAGCAGCTGGTGCAGGCGGTGGCGT
CGCTCGAGGCGTCGTACCCGGCGGGCGCGGCGCCATTGGCCGACCCGGCG
TTGTCGGGGCAGTGGAGCCTGGTCTACAGCTCCTCAGGCGGCATCTTCAA
AGCGATGCTTGGGAAGAAACGGTCGAAGCTGTTCCGCGTGGTAGATCCGC
TGCAAGAGGTGGATGCTGCCGCCTGCACTGTCACCAACACCTGCGGCCTT
CGCCTGCGCTTCACGCCCCTCACGTTCGCGATGTCGCAAATTGGGAGCTA
CGTCGGCAAGGGCGGCTCCGCGGTGGAGATCGACTTCAAGCGCGGCCGGT
TGGCGCGCATCCTTGCGCCCTTCCGCAAGGGATCGGTCTCGGCATCCCTT
ACGTACGTTTCGGACACCTGGCGGATATGCCGCTCCCAGGGCTGCATCCT
GGCCTTCCGCAAGGTCACGGCGACGGAAGCCTAG
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