mRNA_P-wetherbeei_contig6222.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6222.1.1
Unique NamemRNA_P-wetherbeei_contig6222.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A835YM50_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM50_9STRA)

HSP 1 Score: 283 bits (725), Expect = 2.840e-93
Identity = 148/180 (82.22%), Postives = 162/180 (90.00%), Query Frame = 1
Query:    1 TLEFEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDA---------YKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRER 513
            T +FEVPWVEKYRP +LD+VVGN  TI RL++IA EGNLPN+IISGPPGTGKTTSI+ALARTMLKDA         Y NAVLE+NASDSRGIDVVRNKIKMFA KKV+LPPGQHKIIILDEADSMT+AAQQALRRTMEI+SSTTRFALACN+STKIIEPIQSRCAILRF+RLSDEEV +R
Sbjct:    5 TEDFEVPWVEKYRPQSLDEVVGNEQTIERLKVIAQEGNLPNIIISGPPGTGKTTSIHALARTMLKDAAKASSKGQSYTNAVLEMNASDSRGIDVVRNKIKMFAMKKVTLPPGQHKIIILDEADSMTSAAQQALRRTMEIHSSTTRFALACNLSTKIIEPIQSRCAILRFARLSDEEVLQR 184          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: D8LJ53_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ53_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 7.020e-92
Identity = 142/178 (79.78%), Postives = 159/178 (89.33%), Query Frame = 1
Query:    1 TLEFEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRERRRSVSDS 534
            T +FEVPWVEKYRP  LDDVVGN  T+ RL++IA EGN+PNVII GPPGTGKTTS++ALA TML DAY NAVLELNASDSRGI+VVRN IKMF QKKV+LPPGQHK+IILDEADSMTA+AQQALRRTMEIYS TTRFALACN+STKIIEPIQSRCAILRFSRLS+EE+  R + V ++
Sbjct:    5 TDDFEVPWVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAYANAVLELNASDSRGIEVVRNTIKMFTQKKVTLPPGQHKVIILDEADSMTASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCEA 182          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A061S751_9CHLO (Replication factor C subunit 2/4 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S751_9CHLO)

HSP 1 Score: 264 bits (674), Expect = 2.070e-85
Identity = 127/178 (71.35%), Postives = 157/178 (88.20%), Query Frame = 1
Query:    1 TLEFEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRERRRSVSDS 534
            T  +++PWVEKYRP  + D+VGN   ++RL++IA  GNLPN++ SGPPGTGKTTS++ LART+L  +YK+AVLELNASD RGIDVVRNKIKMFAQKKV+LPPG+HK++ILDEADSMTA AQQALRRTMEIYSSTTRFALACN S+K+IEPIQSRCAI+RFSRLS++E+ +R  S+ ++
Sbjct:   29 TTVYDLPWVEKYRPQVIQDIVGNPDAVSRLQVIAEVGNLPNLLFSGPPGTGKTTSVHCLARTLLGPSYKDAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTAGAQQALRRTMEIYSSTTRFALACNTSSKVIEPIQSRCAIIRFSRLSEKEILDRLMSICEA 206          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A2H9ZTB9_9ASPA (AAA domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZTB9_9ASPA)

HSP 1 Score: 263 bits (672), Expect = 3.260e-85
Identity = 133/175 (76.00%), Postives = 155/175 (88.57%), Query Frame = 1
Query:   10 FEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRERRRSVSDS 534
            +EVPWVEKYRPT + DVVGN   ++RL++IA EGN+PN+I+SGPPGTGKTTSI ALA  +L    K AVLELNASD RGIDVVRNKIKMFAQKKV+LPPG+HKIIILDEADSMT+AAQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCA++RFSRLSD+E+ ER  +V ++
Sbjct:   23 YEVPWVEKYRPTKVADVVGNSDAVSRLQVIAREGNMPNIILSGPPGTGKTTSILALAHELLGPHCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTSAAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILERLLTVVET 197          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A8J5SKD0_ZIZPA (AAA domain-containing protein (Fragment) n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SKD0_ZIZPA)

HSP 1 Score: 256 bits (654), Expect = 1.220e-84
Identity = 124/165 (75.15%), Postives = 148/165 (89.70%), Query Frame = 1
Query:   10 FEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEV 504
            +++PWVEKYRPT + DVVGN   +ARL +I+ +GN+PN+I+SGPPGTGKTTSI ALA  +L  +Y+ AVLELNASD RG+DVVRNKIKMFAQKKV+L PG+HKI+ILDEADSMT+ AQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCAI+RFSRLSD+E+
Sbjct:   14 YDIPWVEKYRPTRVADVVGNSDAVARLEVISRDGNMPNIILSGPPGTGKTTSILALAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI 178          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A7S3HE77_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE77_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.340e-84
Identity = 131/176 (74.43%), Postives = 153/176 (86.93%), Query Frame = 1
Query:    1 TLEFEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRERRRSVS 528
            T  FE PWVEK+RP  L ++VGN   ++RL+ IA  GNLPN+I++GPPG GKTTS+  LAR ML D+YKNAVLELNASD+RGIDVVRNKIKMFAQKKV+LPPG+HK+IILDEADSMTAAAQQALRRTMEI+S+TTRFALACN STKIIEPIQSRCA+LR++RLSD EV  R + V+
Sbjct:    4 TNAFEAPWVEKHRPEFLHEIVGNSEAVSRLQAIAAVGNLPNIILAGPPGIGKTTSVLCLAREMLGDSYKNAVLELNASDARGIDVVRNKIKMFAQKKVTLPPGRHKLIILDEADSMTAAAQQALRRTMEIFSNTTRFALACNNSTKIIEPIQSRCAVLRYTRLSDAEVLSRLQDVA 179          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A060SLU7_PYCCI (AAA domain-containing protein n=8 Tax=Polyporaceae TaxID=5317 RepID=A0A060SLU7_PYCCI)

HSP 1 Score: 260 bits (664), Expect = 1.520e-84
Identity = 130/171 (76.02%), Postives = 150/171 (87.72%), Query Frame = 1
Query:    1 TLEFEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRER 513
            TL +E+PWVEKYRP TLDD+VGN  TI RL++IA +GN P++IISG PG GKTTSI+ LA  +L DAYK  VLELNASD RGIDVVRNKIK FAQKKV+LPPG+HKIIILDEADSMTA AQQALRRTMEIY++TTRFALACN+S KIIEPIQSRCAILR+++L DEE+ +R
Sbjct:   18 TLPYELPWVEKYRPQTLDDIVGNTETIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDEEILKR 188          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A445AU10_ARAHY (AAA domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445AU10_ARAHY)

HSP 1 Score: 256 bits (654), Expect = 2.020e-84
Identity = 126/165 (76.36%), Postives = 148/165 (89.70%), Query Frame = 1
Query:   10 FEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEV 504
            ++VPWVEKYRP+ + DVVGN   ++RL++IA +GN+PN+I+SGPPGTGKTTSI ALA  +L    K AVLELNASD RGIDVVRNKIKMFAQKKV+LPPG+HKI+ILDEADSMT+ AQQALRRTMEIYS+TTRFALACN S+K+IEPIQSRCAI+RFSRLSDEE+
Sbjct:   11 YDVPWVEKYRPSKVSDVVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLSDEEI 175          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A835U9H7_VANPL (AAA domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835U9H7_VANPL)

HSP 1 Score: 256 bits (655), Expect = 3.070e-84
Identity = 129/175 (73.71%), Postives = 153/175 (87.43%), Query Frame = 1
Query:   10 FEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEVRERRRSVSDS 534
            +E+PWVEKYRPT + DVVGN   + RL+IIA +GN+PN+I++GPPGTGKTTSI ALA  +L    K+AVLELNASD RGIDVVRNKIKMFAQKKV+LPPG+HKIIILDEADSMT+ AQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCA++RFSRLSD+E+  R  +V ++
Sbjct:   16 YEIPWVEKYRPTKVADVVGNADAVYRLQIIARDGNMPNIILAGPPGTGKTTSILALAHELLGPHCKDAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILSRLLTVVEA 190          
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Match: A0A438JJG0_VITVI (Replication factor C subunit 2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JJG0_VITVI)

HSP 1 Score: 254 bits (649), Expect = 9.850e-84
Identity = 124/165 (75.15%), Postives = 148/165 (89.70%), Query Frame = 1
Query:   10 FEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGTGKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSLPPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEPIQSRCAILRFSRLSDEEV 504
            +++PWVEKYRPT + D+VGN  T++RL++IA +GN+PN+I+SGPPGTGKTTS+ ALA  +L   Y+ AVLELNASD RGIDVVRNKIKMFAQKKV+LP G HKI+ILDEADSMT  AQQALRRTMEIYS++TRFALACNIS+KIIEPIQSRCAI+RFSRLSD+E+
Sbjct:   10 YDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEI 174          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6222.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM50_9STRA2.840e-9382.22P-loop containing nucleoside triphosphate hydrolas... [more]
D8LJ53_ECTSI7.020e-9279.78AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A061S751_9CHLO2.070e-8571.35Replication factor C subunit 2/4 (Fragment) n=1 Ta... [more]
A0A2H9ZTB9_9ASPA3.260e-8576.00AAA domain-containing protein n=1 Tax=Apostasia sh... [more]
A0A8J5SKD0_ZIZPA1.220e-8475.15AAA domain-containing protein (Fragment) n=1 Tax=Z... [more]
A0A7S3HE77_9STRA1.340e-8474.43Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A060SLU7_PYCCI1.520e-8476.02AAA domain-containing protein n=8 Tax=Polyporaceae... [more]
A0A445AU10_ARAHY2.020e-8476.36AAA domain-containing protein n=1 Tax=Arachis hypo... [more]
A0A835U9H7_VANPL3.070e-8473.71AAA domain-containing protein n=1 Tax=Vanilla plan... [more]
A0A438JJG0_VITVI9.850e-8475.15Replication factor C subunit 2 n=1 Tax=Vitis vinif... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6222contigP-wetherbeei_contig6222:180..1366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJ53
Preferred nameRFC2
PFAMsAAA,DNA_pol3_delta2,Rep_fac_C,RuvB_N
Model size534
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00064
KEGG koko:K00620,ko:K10755
KEGG ReactionR00259,R02282
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,ko03030,ko03420,ko03430,map00220,map01100,map01110,map01130,map01210,map01230,map03030,map03420,map03430
KEGG ModuleM00028,M00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0022616,GO:0030554,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045786,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0097367,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
Exons3
Evalue1.15e-92
EggNOG OGsCOG0470@1|root,KOG0991@2759|Eukaryota
EC2.3.1.1,2.3.1.35
DescriptionDNA replication
Cds size534
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.2921083-CDS-P-wetherbeei_contig6222:179..4221683186898.2921083-CDS-P-wetherbeei_contig6222:179..422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6222 180..422 -
1683186898.305129-CDS-P-wetherbeei_contig6222:717..8011683186898.305129-CDS-P-wetherbeei_contig6222:717..801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6222 718..801 -
1683186898.3143451-CDS-P-wetherbeei_contig6222:1159..13661683186898.3143451-CDS-P-wetherbeei_contig6222:1159..1366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6222 1160..1366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6222.1.1prot_P-wetherbeei_contig6222.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6222 180..1366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6222.1.1

>prot_P-wetherbeei_contig6222.1.1 ID=prot_P-wetherbeei_contig6222.1.1|Name=mRNA_P-wetherbeei_contig6222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
TLEFEVPWVEKYRPTTLDDVVGNGPTIARLRIIAVEGNLPNVIISGPPGT
GKTTSINALARTMLKDAYKNAVLELNASDSRGIDVVRNKIKMFAQKKVSL
PPGQHKIIILDEADSMTAAAQQALRRTMEIYSSTTRFALACNISTKIIEP
IQSRCAILRFSRLSDEEVRERRRSVSDS
back to top

mRNA from alignment at P-wetherbeei_contig6222:180..1366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6222.1.1 ID=mRNA_P-wetherbeei_contig6222.1.1|Name=mRNA_P-wetherbeei_contig6222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1187bp|location=Sequence derived from alignment at P-wetherbeei_contig6222:180..1366- (Phaeothamnion wetherbeei SAG_119_79)
ACGCTCGAGTTCGAGGTGCCGTGGGTGGAGAAGTACCGTCCGACCACCCT CGACGACGTCGTCGGGAACGGGCCAACGATTGCGAGGCTCCGGATTATCG CCGTCGAGGGAAACCTGCCAAATGTCATCATCTCGGGCCCGCCAGGGACT GGAAAGACCACGAGCATCAACGCGCTGGCAAGAACAATGCTGAAGGACGC TTATAAGGTGAGCTTTTATAAGTGCACGGGATAAGTTTTCGGGTTGGCAT GCTCTACTGTGATTGTTAAGTCTCAAAAAGGTCGAAACGATGCGTTCCAA AGAGTGTTTTGACTTTTAATTTTGCTCGTGTCGCGTTTCGATTGTCATTG ATATTATTCTTATTTCCATCCGTTCCCAGAGACAGCAAACACATTGATAT CGTTGCTGATCGATCTAGCTTAGAAAACTCGAAACAAGTACAATTTCTCT TTAAGATTCGTCTAGGCCCGCTCTCCCTTAAGCCCCCCGCGTTAACCACG AGCAAGGCATTCCTGCCCCCGTATCAAAACACCGATGGAATCGCCCAACA TCGTCAAATACGCAGAATGCCGTCTTAGAGCTGAACGCCTCGGATTCCCG CGGTATCGACGTGGTGCGCAACAAGATCAAGATGTTCGCTCAAAAGAAGG TGCGCAGCTTGTTTGCGGATAACTGGGAACCTCGTGGGAACGAGAGTGTT TTCGGAGGAAAACGTTTGTTCAATCGGCTGGTCGGTCTCCAATCGAGTGA CCCTCCTTAAACAGCTGCTGCTTCAACGGAATTCAACAAGGAAGTCGGAA GGCGTGCTTGCCGTGATCACCGGTTCACCACCATTCCCCATCCAATGTCA TGTCGCCGCTCGTCTCGCCACCCATTGCCCGCCTGCCGACACCGCCAATG GCAAACTGTTATGACCGCCGCCCACCGCCGGCGCAATGCCACAGGTGTCA CTGCCGCCGGGGCAGCACAAGATAATCATCTTGGACGAGGCTGACTCGAT GACGGCGGCGGCGCAGCAGGCGCTGCGGCGCACCATGGAGATCTACTCGT CAACGACGCGCTTCGCGCTGGCGTGCAACATCTCCACCAAGATCATCGAG CCCATCCAGAGCCGCTGCGCCATCCTCCGCTTCTCGCGCCTTAGCGACGA GGAGGTACGAGAGAGGAGACGATCGGTTTCTGATAGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6222:180..1366-

>mRNA_P-wetherbeei_contig6222.1.1 ID=mRNA_P-wetherbeei_contig6222.1.1|Name=mRNA_P-wetherbeei_contig6222.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig6222:180..1366- (Phaeothamnion wetherbeei SAG_119_79)
ACGCTCGAGTTCGAGGTGCCGTGGGTGGAGAAGTACCGTCCGACCACCCT
CGACGACGTCGTCGGGAACGGGCCAACGATTGCGAGGCTCCGGATTATCG
CCGTCGAGGGAAACCTGCCAAATGTCATCATCTCGGGCCCGCCAGGGACT
GGAAAGACCACGAGCATCAACGCGCTGGCAAGAACAATGCTGAAGGACGC
TTATAAGAATGCCGTCTTAGAGCTGAACGCCTCGGATTCCCGCGGTATCG
ACGTGGTGCGCAACAAGATCAAGATGTTCGCTCAAAAGAAGGTGTCACTG
CCGCCGGGGCAGCACAAGATAATCATCTTGGACGAGGCTGACTCGATGAC
GGCGGCGGCGCAGCAGGCGCTGCGGCGCACCATGGAGATCTACTCGTCAA
CGACGCGCTTCGCGCTGGCGTGCAACATCTCCACCAAGATCATCGAGCCC
ATCCAGAGCCGCTGCGCCATCCTCCGCTTCTCGCGCCTTAGCGACGAGGA
GGTACGAGAGAGGAGACGATCGGTTTCTGATAGT
back to top