mRNA_P-wetherbeei_contig622.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig622.2.1
Unique NamemRNA_P-wetherbeei_contig622.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A8J2WWE3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWE3_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.530e-42
Identity = 109/252 (43.25%), Postives = 139/252 (55.16%), Query Frame = 1
Query:  856 RPVGDIL-LLTVASHSKPQLELLRRSAVAVGIGLRVEGLGDPWRGLGSKVAYMRDALE--GADNNTLVLFLDAFDTLFLPAATALVQRFLWIGAD----LVFGAELACSPDDSLRLLYP-PHLVAAKAFLNSGTYVGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFLRHANTSHVVLDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGRDVVFEKTEELMKVAGWP 1587
            RP G  L ++ VAS  + +L  LR S   +G  L V GLG PWRGLGSKVA +   L+  G   + L+LFLDA+D L LPAA  L +RF  +  +    +VF +E+ C+PD S+RLLY  P   A   FLNSG Y+GRA DVR ML  +A D+  HHA+ G D    DDQRWF RF +      H  LD   + F  L  +  SD  IV GD  + R      +P  +HGNGNG     + +  L    GWP
Sbjct:  287 RPGGGALRVVCVASSERAELTRLRASVKRLGAELTVLGLGQPWRGLGSKVALLAAHLDASGVAADDLILFLDAYDVLLLPAAAQLRKRFTALEREKQGAVVFNSEVNCAPDPSMRLLYGRPADGAPFRFLNSGIYLGRARDVRSMLAVVAADVEAHHASLGADPYRFDDQRWFNRFAIAFPERVH--LDARASFFHTLQDMDASDFDIVDGD-LVSRISEA--APMAVHGNGNGITAFHDLSRRLAADLGWP 533          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A090CXT2_9BACT (Putative secreted protein n=1 Tax=Criblamydia sequanensis CRIB-18 TaxID=1437425 RepID=A0A090CXT2_9BACT)

HSP 1 Score: 110 bits (276), Expect = 8.890e-24
Identity = 76/224 (33.93%), Postives = 112/224 (50.00%), Query Frame = 1
Query:  877 LLTVASHSKPQLELLRRSAVAVGIGLRVEGLGDPWRGLGSKVAYMRDALEGADNNTLVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDE--IAEDLRRHHAAFGGDVLGVDDQRWFTRFFLRHANTSHVVLDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGRDV 1542
            + TVAS  KP L+ L  SA   G+ + V G+G P++  G K++YM+  LE   +  LVLF+DA+D +FL     +  +F    +  V  AE  C P   L   YP      K +LNSGTY+G A  ++ +L+E  I ED                DQ   T+ FLR  +   + LD    LF+ LH +  + + +   DP L     TG +P ++HGNG G+ +
Sbjct:   27 ICTVASRPKPGLQQLLLSAEKFGLKVEVLGMGLPYKKNGQKLSYMKMYLENIPDTDLVLFVDAYDVIFLANENVIKDKFYSFNSPFVISAETNCFPFQELASAYPESPTLFK-YLNSGTYMGYAGYIKFLLNEFIIEEDK--------------SDQGQLTKLFLRREH--EITLDYYSELFMTLHGIRGNQIKLEK-DPKLVHCLLTGSTPSIIHGNGLGKKL 232          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A7S2RJ31_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ31_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.110e-21
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  820 SYDPTPTHFQPSRPVGDILLLTVASHSKPQLELLRRSAVAVGIGLRVEGLGDPW--RGLGSKVAYMRDALE----GAD--NNTLVLFLDAFDTLFLPAAT--ALVQRFLWIGADLVFGAELACSPDDSLRLLYP-PH-------------------------LVAAKAFLNSGTYVGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFLRHANTSHVVLDTARALFLPLH 1428
            S D T +  +P+     ++++TVA+   P+LE LR+SA   G+ + + G+G  +  +G G+K+  M + L     G D  ++TLVLF+DA+D L LP+ +  A+  RF       +F  E  C PD  +   YP P+                         +     + NSG Y+ RA  +RRM+ E+ +D+RRHH   GGD    DDQRW  R +LRH     V +D+   +FL LH
Sbjct:   99 SKDTTGSQDRPA-----VVVVTVATDLGPELESLRQSAQIHGMDVEILGIGRVYGTKG-GTKLELMEEWLSPGGRGHDLPDDTLVLFVDAYDVLLLPSVSPEAIATRFAQFNVSAIFSGETGCWPDPGVAPGYPYPYFHHQPQFGDLYNVSNYRFPAAGGTPVAVPFPYPNSGGYLARAGYMRRMIIEVMDDMRRHHFVGGGDAKDADDQRWIQRHWLRHPED--VAIDSFAEIFLSLH 329          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: UPI00102E165B (procollagen-lysine,2-oxoglutarate 5-dioxygenase isoform X2 n=2 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00102E165B)

HSP 1 Score: 105 bits (262), Expect = 6.260e-20
Identity = 90/273 (32.97%), Postives = 125/273 (45.79%), Query Frame = 1
Query:  823 YDPTPTHFQPSRPVGDILLLTVASHSKPQLELLRRSAVAVGIG--LRVEGLGDPWRGL--------GSKVAYMRDALEGADNNT--LVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDEIA---EDLRRHHAAFGGDVLGVDDQRWFTRFFLR-HANTSHVV-LDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGRDVVFEKTEELMKVAGWPP 1590
            Y P       S    DIL+ TVAS+     +   RSA   G    L V GLG+PW+G         G K+  +R AL+   N+   +V F D++D +FL   +A+V+RFL  GA ++F AE  C PD SL   YPP +   K +LNSG +VG ASDV ++LD      ED               DDQ ++T  +L       H + LD    +F  L+       +   G+ A  +       P VLHGNG  + V+      L +   W P
Sbjct:   62 YRPEQKTCSASFNTSDILIFTVASNETDGFQRYLRSAEVYGFRDKLNVLGLGEPWKGGNVVKYSGGGYKINLLRKALQEYQNDERKIVFFTDSYDVIFLGDLSAIVERFLNTGARVLFSAEAYCWPDSSLAAQYPP-VSRGKRYLNSGGFVGYASDVYKILDTAPIKDED---------------DDQLFYTTVYLNDELRVRHKIKLDHKSEIFQNLYGAVADVELRFKGEEAYLQNIVYNTVPLVLHGNGYSKLVLNSLGNYLARA--WTP 316          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A6I9WPP9_9HYME (procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 isoform X1 n=3 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9WPP9_9HYME)

HSP 1 Score: 105 bits (262), Expect = 6.270e-20
Identity = 84/255 (32.94%), Postives = 124/255 (48.63%), Query Frame = 1
Query:  868 DILLLTVASHSKPQLELLRRSAVAVGIG--LRVEGLGDPWRGL--------GSKVAYMRDALEGA--DNNTLVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFLR-HANTSHVV-LDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGRDVVFEKTEELMKVAGWPP 1590
            D+L+ TVAS+     +   RSA   G    L V GLG+PWRG         G K+  ++ ALE    D   ++LF D++D +FL   +A+V+RFL I A ++F AE  C PD SL   YPP +   K +LNSG ++G ASDV ++L+   E ++             DDQ ++T  +L     T H + LD    +F  L+       +   G+ A  +       P +LHGNG  + V+      L +   W P
Sbjct:   78 DVLVFTVASNGTDGFQRYLRSAEVYGFRDKLNVLGLGNPWRGGNVVNYAGGGYKINLLKKALEDYQDDEKKIILFTDSYDVIFLGGLSAIVERFLNIDARILFSAEAYCWPDKSLAARYPP-VSRGKRYLNSGGFIGYASDVYKILN--IEAIKDED----------DDQLYYTNAYLNDELRTRHKIKLDHKSKIFQNLNGAVADVELRFKGEEAYLQNIVYNTVPLILHGNGFSKLVLNSLGNYLARA--WTP 317          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: UPI0013F22B8B (procollagen-lysine,2-oxoglutarate 5-dioxygenase isoform X1 n=2 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F22B8B)

HSP 1 Score: 104 bits (259), Expect = 1.470e-19
Identity = 84/254 (33.07%), Postives = 125/254 (49.21%), Query Frame = 1
Query:  829 PTPTHFQPSRPVGDILLLTVASHSKPQLELLRRSAVAVGI--GLRVEGLGDPWRGL--------GSKVAYMRDALEGA--DNNTLVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDEIA-EDLRRHHAAFGGDVLGVDDQRWFTRFFLR-HANTSHVV-LDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGRDVV 1545
            P+ +HF+ +    D+L+ TVAS+        +RS    G    L++ GLGD W+G         G KV  +R ALE    D   +VLF D++D +FL   +A+V+RFL  GA ++F AE  C PD SL   YPP +   K +LNSG+++G A+D+  +L+    EDL              DDQ ++T  +L       H + LD    +F  L+       +   G+ A  +       P VLHGNG  + V+
Sbjct:   69 PSESHFETT----DVLVFTVASNETDGFRRYQRSVEIYGFRDNLKILGLGDSWKGGKVTYEPGGGYKVNLLRKALEDYRNDEKKIVLFTDSYDVIFLGGLSAIVERFLNTGARILFAAEGYCWPDRSLASQYPP-VSRGKRYLNSGSFIGYATDLLAILNTAPIEDL-------------ADDQLFYTTAYLNDELRARHQIKLDHKSDIFQNLNGAVADVELRFKGEEAYLQNIVYNTVPLVLHGNGFSKLVL 304          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A654GSN9_9CEST (Non-specific serine/threonine protein kinase n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GSN9_9CEST)

HSP 1 Score: 105 bits (261), Expect = 1.520e-19
Identity = 78/232 (33.62%), Postives = 113/232 (48.71%), Query Frame = 1
Query:  871 ILLLTVASHSKPQLELLRRSAVAVGIGLRVEGLGDPWRGL--------GSKVAYMRDALEGA--DNNTLVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFL--RHANTSHVVLDTARALFLPLHSVPPSDLVIVPGDPALFRYGP-TGGSPCVLHGNG 1527
            +L+ TVA+ S    +   RSA      ++V G G PW G         G K+  +++ALE    D++T+VLFLD++D +FL      ++++    A +VF AE+ C P  SL+  YPP       FLNSG++VG A+ + R+L          HA         DDQ ++T  FL  +      + LDT   LF  L+ V   D+ I  GD   + Y   T   P V HGNG
Sbjct: 2948 LLVFTVATDSNDAFQRFMRSAKMFDFDVKVLGAGSPWTGGDIARYPGGGQKIRLLKEALESYANDSDTIVLFLDSYDVVFLNDKAEFLRKYRKFDAKVVFSAEVYCWPSPSLKASYPPVTDGESRFLNSGSFVGPAASLYRILT---------HAPVADTD---DDQLYYTTIFLDAKLRKNIDIALDTRSELFQNLNGVL-DDVQIKYGDETGYLYNEKTSTQPVVAHGNG 3166          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A3P6G6X5_MESCO (Fe2OG dioxygenase domain-containing protein n=4 Tax=Mesocestoides corti TaxID=53468 RepID=A0A3P6G6X5_MESCO)

HSP 1 Score: 102 bits (254), Expect = 5.620e-19
Identity = 70/232 (30.17%), Postives = 112/232 (48.28%), Query Frame = 1
Query:  868 DILLLTVASHSKPQLELLRRSAVAVGIGLRVEGLGDPWRGL--------GSKVAYMRDALE--GADNNTLVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFL--RHANTSHVVLDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNG 1527
            ++L+ TVA+     L+   RSA   G  +++ G G+PW G         G KV ++++ALE   +D ++LVLFLD++D +F+ +A + ++++  +   ++F AE  C P  SL   YP        FLNSG++VG A+D+ R++     D               DDQ ++T  FL  +      + LDT   LF  L+       +    +        TG  P V HGNG
Sbjct:   33 ELLVYTVATDDNDALQRFERSAELFGFRVKILGAGEPWLGGDVANYPGGGQKVRFLKEALEPISSDTDSLVLFLDSYDVVFMNSAESFIRKYESLEHRVIFSAEKYCWPKPSLESQYPSVGENESRFLNSGSFVGPAADIHRIISYSPIDNED------------DDQLYYTNIFLDPQLRREFDIALDTRSELFQNLNGALEDVRIEYNNETGYLVNALTGSRPVVAHGNG 252          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: E2A8F6_CAMFO (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 n=3 Tax=Camponotus floridanus TaxID=104421 RepID=E2A8F6_CAMFO)

HSP 1 Score: 102 bits (253), Expect = 7.940e-19
Identity = 80/246 (32.52%), Postives = 122/246 (49.59%), Query Frame = 1
Query:  850 PSRPVGDILLLTVASHSKPQLELLRRSAVAVGIG--LRVEGLGDPWRGL--------GSKVAYMRDALEGADNNT--LVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFLR-HANTSHVV-LDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGRDVV 1545
            P+    D+L+ TVAS+     +   RS         LR+ GLG+PWRG         G K+  ++ ALE   N+   +VLF D++D +FL   +A+V+RFL   A ++F AE+ C PD SL + YP  +   K +LNSG ++G ASDV  +LD+   D++             DDQ ++T  +L+    T H + LD    +F  L        +   G+ A  +       P +LHGNG  + V+
Sbjct:   29 PAADANDVLVFTVASNETDGFQRYLRSVEVYKFRDKLRILGLGEPWRGGNVMTYAGGGYKINLLKKALEDYQNDEKKIVLFTDSYDVIFLGGLSAIVERFLDTDARVLFSAEVYCWPDRSLAIHYPT-VSGGKRYLNSGGFIGYASDVYEILDKA--DIKDED----------DDQLFYTTVYLQDELRTRHKIKLDHKSEIFQNLFGAVADVELRFKGEEAYVQNIVYNTVPLILHGNGFSKLVL 261          
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Match: A0A4S2L0K1_OPIFE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Opisthorchiidae TaxID=6196 RepID=A0A4S2L0K1_OPIFE)

HSP 1 Score: 100 bits (250), Expect = 1.680e-18
Identity = 76/234 (32.48%), Postives = 113/234 (48.29%), Query Frame = 1
Query:  868 DILLLTVASHSKPQLELLRRSAVAVGIGLRVEGLGDPWRGL--------GSKVAYMRDALEGADN--NTLVLFLDAFDTLFLPAATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTYVGRASDVRRMLDE--IAEDLRRHHAAFGGDVLGVDDQRWFTRFFLRHA--NTSHVVLDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNG 1527
            D+L+LTVA+ +   LE   RSA      ++V GLG  W+G         G K+  +RD L    N  + L+LFLD++D +F+ +   L++ +      ++FGAE  C PD SL  +YP        FLNSG ++G AS++ RM+ E  I ED               DDQ ++T+ +L  A     ++ LDT  ++F  L+       +    D        TG  P V HGNG
Sbjct:   21 DLLVLTVATETNDALERFLRSANNYQFNVKVLGLGLVWKGGDVSHSVGGGQKINLLRDELRSHINLDDLLILFLDSYDVVFMDSKFRLLEEYENSNYTILFGAESFCWPDQSLEKMYPQVGPKENRFLNSGGFIGPASNLYRMVTEMPIKED--------------DDDQLYYTKIYLNEALRRELNIGLDTRSSIFQNLNGALQEVELHFTNDTGYLVNTKTGTRPIVAHGNG 240          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig622.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2WWE3_9STRA3.530e-4243.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A090CXT2_9BACT8.890e-2433.93Putative secreted protein n=1 Tax=Criblamydia sequ... [more]
A0A7S2RJ31_9STRA1.110e-2133.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI00102E165B6.260e-2032.97procollagen-lysine,2-oxoglutarate 5-dioxygenase is... [more]
A0A6I9WPP9_9HYME6.270e-2032.94procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ... [more]
UPI0013F22B8B1.470e-1933.07procollagen-lysine,2-oxoglutarate 5-dioxygenase is... [more]
A0A654GSN9_9CEST1.520e-1933.62Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3P6G6X5_MESCO5.620e-1930.17Fe2OG dioxygenase domain-containing protein n=4 Ta... [more]
E2A8F6_CAMFO7.940e-1932.52Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ... [more]
A0A4S2L0K1_OPIFE1.680e-1832.48Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig622contigP-wetherbeei_contig622:4398..6836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1437425.CSEC_0162
Model size1851
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.24e-25
EggNOG OGs2DSW0@1|root,33HMH@2|Bacteria
Cds size1587
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig622.2.1prot_P-wetherbeei_contig622.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig622 4626..6800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.114399-UTR-P-wetherbeei_contig622:4397..46251683186898.114399-UTR-P-wetherbeei_contig622:4397..4625Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig622 4398..4625 -
1683186898.1711943-UTR-P-wetherbeei_contig622:6800..68361683186898.1711943-UTR-P-wetherbeei_contig622:6800..6836Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig622 6801..6836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186898.1326041-CDS-P-wetherbeei_contig622:4625..52001683186898.1326041-CDS-P-wetherbeei_contig622:4625..5200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig622 4626..5200 -
1683186898.1422167-CDS-P-wetherbeei_contig622:5325..55721683186898.1422167-CDS-P-wetherbeei_contig622:5325..5572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig622 5326..5572 -
1683186898.1506252-CDS-P-wetherbeei_contig622:5794..60451683186898.1506252-CDS-P-wetherbeei_contig622:5794..6045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig622 5795..6045 -
1683186898.1597266-CDS-P-wetherbeei_contig622:6286..68001683186898.1597266-CDS-P-wetherbeei_contig622:6286..6800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig622 6287..6800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig622.2.1

>prot_P-wetherbeei_contig622.2.1 ID=prot_P-wetherbeei_contig622.2.1|Name=mRNA_P-wetherbeei_contig622.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=529bp
MFAISEETGEKSCGELCVQLDQEKPLCAAAGVLASGTLFSGLSLGHHSLA
TFSADDGEKAQGDSSWFHVSAGLSAQNEALGFKAHLVYIKQGANTNRLPV
SVSRFDVDLQLAEAYMQRFGISGFAFVKPTDSESAPPYSAEDADVVENKA
ATTLKDVLARELFLEEMRSMKGTFLSINGSFIGTDVIPALKIYPMMYSGM
VLEDPVASANLFSALDRALSVNPSFAEAAHLYLNLAWDLKMPQKAIEKAV
RIAWQSIEAGRSYDPTPTHFQPSRPVGDILLLTVASHSKPQLELLRRSAV
AVGIGLRVEGLGDPWRGLGSKVAYMRDALEGADNNTLVLFLDAFDTLFLP
AATALVQRFLWIGADLVFGAELACSPDDSLRLLYPPHLVAAKAFLNSGTY
VGRASDVRRMLDEIAEDLRRHHAAFGGDVLGVDDQRWFTRFFLRHANTSH
VVLDTARALFLPLHSVPPSDLVIVPGDPALFRYGPTGGSPCVLHGNGNGR
DVVFEKTEELMKVAGWPPPDATAIAAAA*
back to top

mRNA from alignment at P-wetherbeei_contig622:4398..6836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig622.2.1 ID=mRNA_P-wetherbeei_contig622.2.1|Name=mRNA_P-wetherbeei_contig622.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2439bp|location=Sequence derived from alignment at P-wetherbeei_contig622:4398..6836- (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCACCATCGTGCCTCGCGGAAATCTCACTCCGATGTTCGCCATCTC CGAAGAAACTGGAGAGAAGTCCTGTGGCGAGCTATGCGTCCAGCTGGATC AGGAGAAGCCGTTGTGCGCTGCAGCAGGCGTCCTGGCTTCAGGGACGCTC TTCTCCGGACTGTCTCTCGGGCATCACAGCTTGGCCACATTCAGCGCAGA CGACGGGGAAAAAGCGCAAGGCGATTCTTCTTGGTTTCATGTTTCAGCTG GCCTTTCGGCCCAGAACGAAGCGCTGGGGTTCAAGGCCCATCTCGTTTAC ATAAAGCAGGGGGCGAACACAAACCGACTGCCCGTTAGTGTTTCCCGCTT CGACGTCGACCTTCAGCTCGCGGAGGCATACATGCAGCGTTTTGGAATCA GCGGCTTCGCGTTCGTGAAGCCCACGGACTCGGAGTCGGCGCCACCATAC AGCGCAGAAGACGCCGATGTCGTTGAGAACAAAGCGGCGACCACGCTTAA GGACGTGCTCGCCCGGGAGCTCTTCTTGGAGGAGATGCGCTCAATGAAAG GTGGGCTCGGCTTTGACGTTGTGGGTTGCTTTTGAAGCGTGTGTTTTATG TGTTTGATGAATACTGTTTTTCAGCGCCTGCCCACGGGAACGTAAAGAAA TCGATATCGTTATAGTCAGCGTTCTGTAGCCAGCGTTCTCTACGGGCTCT CTTATCGTTTGGTGTGCTTTTCGTGCTTGCTTGGTTCGCCCGTTTAATCG CTGCTGCGTTCGACGTGCTGCGCTCCACGCTCTCACCGCAGGAACTTTTC TTAGCATTAACGGGTCATTCATTGGGACGGACGTCATTCCCGCACTGAAG ATATACCCGATGATGTACAGCGGAATGGTCCTGGAGGACCCCGTGGCATC GGCAAACCTCTTTTCGGCCCTTGACAGGGCGTTGAGCGTCAACCCTTCCT TCGCGGAAGCGGCGCACCTGTACCTCAATTTGGCGTGGGACTTGAAGATG CCGCAGAAAGCTATCGAAAAGGCCGTGCGCATCGCCTGGCAGGCCAGTGG TTTCGTTGCTGTGTTGCATCGCTGGCGGTGCCTGTAAAACTTCAAAGCCG CATCAACTTCTTTTGAGAGCCATCGGGTGTATCGGCACGCGAGCGGCCGC GTGTACGCAGCTTGTGTACCGCTGCGGCTTTCTCGAGCATACTGCGCGTC GAAACATGAAACAACGAGTTCCTTCCATTTTTTTCTGATGTTTCTTCGAT GTACTAATCCGCAGTCCATCGAAGCGGGAAGGAGCTATGACCCCACGCCA ACCCACTTCCAGCCGTCGAGGCCTGTGGGAGACATCCTGCTCCTCACCGT CGCCAGCCACAGCAAGCCGCAGCTGGAGCTGCTGCGGCGGTCGGCGGTCG CCGTCGGGATAGGACTGCGGGTGGAAGGCTTGGGCGATCCCTGGCGGGGC CTCGGCTCGAAGGTCGCCTACATGCGCGACGCTTTGGAAGGCGCCGACAA CAACACGCTCGGTGAGAATCGGATTTGTGTGGGTTTTTTAGTCCGCGTTC TGCCTGCTCTGTGATTGGGTAGTGATGCGGATTCTTACGTTAGACCCTTG ACCTTCACGCCCGCCTCCAACATCTTCCCTCCACAGTTCTTTTTCTGGAC GCTTTCGACACTCTTTTCCTCCCGGCGGCCACAGCGCTGGTCCAGCGCTT TCTGTGGATCGGAGCCGATTTGGTGTTCGGCGCCGAACTGGCCTGCTCCC CGGACGACTCGCTGCGGCTGCTCTACCCGCCGCACCTCGTCGCCGCGAAA GCGTTCCTCAACTCGGGTACGTATGTCGGCCGCGCCTCGGATGTCCGTCG GATGCTGGACGAGATCGCCGAGGACCTGCGACGGCACCATGCAGCGTTCG GCGGCGACGTCCTGGGCGTGGACGACCAGCGGTGGTTCACCCGCTTCTTC TTGCGGCACGCCAACACCAGCCATGTCGTGCTGGACACCGCCCGGGCGCT TTTCCTGCCGTTGCACAGCGTGCCGCCATCGGACCTTGTCATTGTGCCCG GAGATCCCGCGCTGTTCCGGTACGGCCCGACCGGCGGGTCGCCGTGCGTG CTGCATGGGAACGGCAACGGTAGAGACGTCGTCTTTGAAAAGACGGAGGA GCTGATGAAGGTCGCTGGATGGCCACCGCCGGATGCCACGGCTATTGCTG CCGCTGCCTGAGGCGCGGCGCGGACCAAAAGTCCGCCAGCTGCAGAGAAT AGCGATGAAGAATGCAGAGAACCACCTCATCGAGAGTTGACGGCTTCCAG CATTTGGACCAAAAAGACTTGCTAGAGCGAGGCCTGAAGCAGCGAAGTAT GCCCAACCAGAAGCTTTCCTGCTGGATGAGTAGCTAGAGAAACAGATTCT CAGAAATTCATATCCGTTCGTTCTCTCATTCCTTCGTCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig622:4398..6836-

>mRNA_P-wetherbeei_contig622.2.1 ID=mRNA_P-wetherbeei_contig622.2.1|Name=mRNA_P-wetherbeei_contig622.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1587bp|location=Sequence derived from alignment at P-wetherbeei_contig622:4398..6836- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGCCATCTCCGAAGAAACTGGAGAGAAGTCCTGTGGCGAGCTATG
CGTCCAGCTGGATCAGGAGAAGCCGTTGTGCGCTGCAGCAGGCGTCCTGG
CTTCAGGGACGCTCTTCTCCGGACTGTCTCTCGGGCATCACAGCTTGGCC
ACATTCAGCGCAGACGACGGGGAAAAAGCGCAAGGCGATTCTTCTTGGTT
TCATGTTTCAGCTGGCCTTTCGGCCCAGAACGAAGCGCTGGGGTTCAAGG
CCCATCTCGTTTACATAAAGCAGGGGGCGAACACAAACCGACTGCCCGTT
AGTGTTTCCCGCTTCGACGTCGACCTTCAGCTCGCGGAGGCATACATGCA
GCGTTTTGGAATCAGCGGCTTCGCGTTCGTGAAGCCCACGGACTCGGAGT
CGGCGCCACCATACAGCGCAGAAGACGCCGATGTCGTTGAGAACAAAGCG
GCGACCACGCTTAAGGACGTGCTCGCCCGGGAGCTCTTCTTGGAGGAGAT
GCGCTCAATGAAAGGAACTTTTCTTAGCATTAACGGGTCATTCATTGGGA
CGGACGTCATTCCCGCACTGAAGATATACCCGATGATGTACAGCGGAATG
GTCCTGGAGGACCCCGTGGCATCGGCAAACCTCTTTTCGGCCCTTGACAG
GGCGTTGAGCGTCAACCCTTCCTTCGCGGAAGCGGCGCACCTGTACCTCA
ATTTGGCGTGGGACTTGAAGATGCCGCAGAAAGCTATCGAAAAGGCCGTG
CGCATCGCCTGGCAGTCCATCGAAGCGGGAAGGAGCTATGACCCCACGCC
AACCCACTTCCAGCCGTCGAGGCCTGTGGGAGACATCCTGCTCCTCACCG
TCGCCAGCCACAGCAAGCCGCAGCTGGAGCTGCTGCGGCGGTCGGCGGTC
GCCGTCGGGATAGGACTGCGGGTGGAAGGCTTGGGCGATCCCTGGCGGGG
CCTCGGCTCGAAGGTCGCCTACATGCGCGACGCTTTGGAAGGCGCCGACA
ACAACACGCTCGTTCTTTTTCTGGACGCTTTCGACACTCTTTTCCTCCCG
GCGGCCACAGCGCTGGTCCAGCGCTTTCTGTGGATCGGAGCCGATTTGGT
GTTCGGCGCCGAACTGGCCTGCTCCCCGGACGACTCGCTGCGGCTGCTCT
ACCCGCCGCACCTCGTCGCCGCGAAAGCGTTCCTCAACTCGGGTACGTAT
GTCGGCCGCGCCTCGGATGTCCGTCGGATGCTGGACGAGATCGCCGAGGA
CCTGCGACGGCACCATGCAGCGTTCGGCGGCGACGTCCTGGGCGTGGACG
ACCAGCGGTGGTTCACCCGCTTCTTCTTGCGGCACGCCAACACCAGCCAT
GTCGTGCTGGACACCGCCCGGGCGCTTTTCCTGCCGTTGCACAGCGTGCC
GCCATCGGACCTTGTCATTGTGCCCGGAGATCCCGCGCTGTTCCGGTACG
GCCCGACCGGCGGGTCGCCGTGCGTGCTGCATGGGAACGGCAACGGTAGA
GACGTCGTCTTTGAAAAGACGGAGGAGCTGATGAAGGTCGCTGGATGGCC
ACCGCCGGATGCCACGGCTATTGCTGCCGCTGCCTGA
back to top