mRNA_P-wetherbeei_contig6213.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6213.2.1
Unique NamemRNA_P-wetherbeei_contig6213.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6213.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6213contigP-wetherbeei_contig6213:1584..3148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionFAM183 family
Ec32 orthologEc-06_008140.1
Cds size495
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6213.2.1prot_P-wetherbeei_contig6213.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6213 1679..2730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.797511-UTR-P-wetherbeei_contig6213:1583..16781683186897.797511-UTR-P-wetherbeei_contig6213:1583..1678Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6213 1584..1678 +
1683186897.8587954-UTR-P-wetherbeei_contig6213:2730..31481683186897.8587954-UTR-P-wetherbeei_contig6213:2730..3148Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6213 2731..3148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.8115938-CDS-P-wetherbeei_contig6213:1678..17171683186897.8115938-CDS-P-wetherbeei_contig6213:1678..1717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6213 1679..1717 +
1683186897.8250709-CDS-P-wetherbeei_contig6213:1858..20261683186897.8250709-CDS-P-wetherbeei_contig6213:1858..2026Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6213 1859..2026 +
1683186897.837359-CDS-P-wetherbeei_contig6213:2197..24081683186897.837359-CDS-P-wetherbeei_contig6213:2197..2408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6213 2198..2408 +
1683186897.846545-CDS-P-wetherbeei_contig6213:2653..27301683186897.846545-CDS-P-wetherbeei_contig6213:2653..2730Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6213 2654..2730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6213.2.1

>prot_P-wetherbeei_contig6213.2.1 ID=prot_P-wetherbeei_contig6213.2.1|Name=mRNA_P-wetherbeei_contig6213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MATPEKRAEAVDEVTRVQVYREIIRKENSIVLKPHKFSFNVHRLTFIARK
PTEFDPRSYEEDSRKTREQVRMLEEKVRKNLEELRASDGNGPSTAIDKSI
YWSRESDEYGCDQKASGAATTAASKKSCWNKPKNTSDITGYADYYYAMTQ
TSPFARKKEGVIKQ*
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mRNA from alignment at P-wetherbeei_contig6213:1584..3148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6213.2.1 ID=mRNA_P-wetherbeei_contig6213.2.1|Name=mRNA_P-wetherbeei_contig6213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1565bp|location=Sequence derived from alignment at P-wetherbeei_contig6213:1584..3148+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCAGCTTATTTCTACCCCACCAAGGAGCGTCGAGCCCCACACTTTCTC
CGAGGGCAAATATTAGAAGGGAATAGGGAAAACCTAAAACGACAAATGGC
GACGCCAGAAAAGCGTGCCGAAGCGGTCGATGAGGTAAATCTCATCGCAA
GAGACTTGCACAGGAACTAGAAACAAGCTGCCGGAATCGAACCGGTCCGC
TCTCGATAAGTGACCTGAAACTTGAACCTACCTCCTCGCGCACAGTCGCT
CTAATTTTTCGCAATCGCCTCTCAGGTTACGCGCGTTCAAGTCTACAGGG
AGATTATCCGTAAGGAGAACAGCATCGTCTTAAAACCGCACAAGTTCTCC
TTCAACGTGCACCGGCTGACCTTCATCGCCAGAAAGCCCACGGAATTCGA
CCCCAGAAGCTACGAGGAGGACTCGCGAAAGACGCGAGAGCAGGTGGAGG
ACATTGGAAACGGGTATTTCGGAAGGAAATTGGACTAGGTCCAAAGACTC
TAGCGTCCTATGAATGCCTCCTTGATGCTCACCCTTTCGCGCACCGTGCT
GCCAAATGCCGCGTGCCGCCATCGCTCACCAGGTCAAATGCCGCGTGCCG
CCATCGCTCACCAGGTCCGCATGCTGGAGGAAAAGGTGCGCAAGAACCTT
GAAGAACTGCGCGCCAGCGACGGCAACGGCCCCAGCACCGCCATCGACAA
GTCCATCTACTGGTCGCGGGAGTCGGACGAATACGGCTGCGACCAAAAGG
CTTCGGGTGCCGCCACCACAGCGGCGTCCAAAAAGAGCTGCTGGAACAAG
CCCAAAAACACATCGGACATAACCGGTGCGTGCGAGTCTCATAAAACCAG
CCGTGTGAGATGGAGATACTGCCTGTCCCTTTCTTGGAAACTCTTTGAAC
GGCAGGAAAGTTTTCCTTCTGCATAATGCTTATTACATCCGGCAGCTTTT
GTGCCACTACAACTCCCCCGTGCACATGGAGGGTGACCTGAGTCGACATG
TTCGAGAGAAAGACGAGGAAACGAGGTTTTTCTCTCTATCTTCGCTCTCT
CTCACCTTTCCCCGCAATAGGGTACGCTGACTACTACTACGCCATGACGC
AAACCAGCCCGTTCGCCCGCAAGAAGGAGGGGGTAATAAAACAATGAATC
TGGGTGGCCGCGAATTCGGGAGGCGATCACGTCTCCGGCGTCGCTCTGAA
GTGGGAAACTACGCTACATCCGTGACGCAGGAGCTGCTACATAGTTTGAG
GCTACGTAGTTTGAGGCGCATACTGTGCTGTCATTGTTGCATTTTGGTGG
AATCATAAGTATGTCGCGGCGTATTTCGATCTCAACCGTTGTGGTAAACG
ACGGGAGTGTGAGAGTCGTATGCTCATGATGGAGGCATCGGGAAGGCCAA
CTGCAGCTGCCCTTCCAACTGGAAATCTCACACAATGTACAGGCTGTTGG
GTTTGCCTGCTTGCTGCTAAATAGCGAGCTTTCTGATCGGTGCGTATTGG
AAATTGGCGGCGGCCAGGCGGCGAATTTAGGCTTCTGCGTCGTGTCGCTG
CACGGCGTCGCTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6213:1584..3148+

>mRNA_P-wetherbeei_contig6213.2.1 ID=mRNA_P-wetherbeei_contig6213.2.1|Name=mRNA_P-wetherbeei_contig6213.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig6213:1584..3148+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGCCAGAAAAGCGTGCCGAAGCGGTCGATGAGGTTACGCGCGT
TCAAGTCTACAGGGAGATTATCCGTAAGGAGAACAGCATCGTCTTAAAAC
CGCACAAGTTCTCCTTCAACGTGCACCGGCTGACCTTCATCGCCAGAAAG
CCCACGGAATTCGACCCCAGAAGCTACGAGGAGGACTCGCGAAAGACGCG
AGAGCAGGTCCGCATGCTGGAGGAAAAGGTGCGCAAGAACCTTGAAGAAC
TGCGCGCCAGCGACGGCAACGGCCCCAGCACCGCCATCGACAAGTCCATC
TACTGGTCGCGGGAGTCGGACGAATACGGCTGCGACCAAAAGGCTTCGGG
TGCCGCCACCACAGCGGCGTCCAAAAAGAGCTGCTGGAACAAGCCCAAAA
ACACATCGGACATAACCGGGTACGCTGACTACTACTACGCCATGACGCAA
ACCAGCCCGTTCGCCCGCAAGAAGGAGGGGGTAATAAAACAATGA
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