mRNA_P-wetherbeei_contig6209.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6209.1.1
Unique NamemRNA_P-wetherbeei_contig6209.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 7.540e-40
Identity = 78/168 (46.43%), Postives = 101/168 (60.12%), Query Frame = 1
Query:   16 WGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLA------------------PGELPQTTDPEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMAAM 465
            W V LWL++D  VR+LN QYRGK KSTDILSF ++E                     PG+L +   PE+M LG+M+VS+AYV R +++D+ +                  EEE DRGVSGAM+  F +Q RL LL +HGL HLVGYDHETD DYE MV +EE ++ A+
Sbjct:   69 WDVSLWLTTDKTVRKLNSQYRGKDKSTDILSFSYNELQCSYRLLHGGSHSTKLQVETPGKLAKVRHPEEMDLGEMMVSLAYVDRVIQQDKAEQDGQSQ------------EEEHDRGVSGAMSRVFTVQERLPLLCIHGLLHLVGYDHETDEDYEVMVAREEELLRAL 224          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.360e-39
Identity = 77/156 (49.36%), Postives = 101/156 (64.74%), Query Frame = 1
Query:    1 LRAEGWGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHE-GLAPGELPQTTDPEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMAAM 465
            L  + W VG  L++D +V RLNRQYRG   STDILSFP H+   +PG LP+   P +M LGDM +S+AYV RQ++RDR++                    + +RGVSGAM+  FD+Q R  +LLVHGL HL+GYDHET+ DY+AMV  EE V+ A+
Sbjct:  133 LGCQAWDVGAVLTTDKEVFRLNRQYRGMSTSTDILSFPNHDMSGSPGVLPKVRFPAEMDLGDMFISLAYVDRQIKRDREEXXXXXXXXXXXXXXXXXXXXDSERGVSGAMSRVFDVQERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVLRAV 288          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: F0XVF3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF3_AURAN)

HSP 1 Score: 138 bits (347), Expect = 3.950e-38
Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = 1
Query:    1 LRAEGWGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGELPQTTD---PEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVM 456
            LR   + VG+WL++D  +R+ N ++RG RKSTDILSFPFH+ LAPG LP   D    + + LGDMVVSV YV R+ E+D      D + G               RGV+ AMA   D++ R+ +LLVHGLCHL+ YDHETD ++E MV  E+ ++
Sbjct:   66 LRCSEFDVGIWLTTDATIRKYNTRFRGMRKSTDILSFPFHDELAPGALPDAVDRDDEDDLNLGDMVVSVPYVRRRAEKD---GGRDHAPG---------------RGVAAAMAPVADVEERIHMLLVHGLCHLLNYDHETDDEFEDMVALEDELL 202          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A7S2RF28_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RF28_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.390e-35
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   22 VGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGL-APGELPQTTDPEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMAAM 465
            VGLWLSSD  VR  N +YRG RKSTDILSFPF++ L AP  LP+    + M LGDM+VSV YVAR  +RD + A   +S G      +  GE  +  GVSG M   F  Q RL LL++HG+CHL+G+DHE D +Y  M  +EER++  +
Sbjct:   99 VGLWLSSDRTVRDWNTRYRGMRKSTDILSFPFYDQLRAPDPLPEMQCEDDMNLGDMIVSVPYVARACKRDHRDA---LSMGED----SWTGESVQLGGVSGEMMHYFSPQPRLALLVIHGICHLLGHDHEEDSEYALMRAEEERLIRGL 240          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.640e-32
Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = 1
Query:   22 VGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGELPQTTD----PEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMA 459
            V LWL++D  +R  N +YRGKR +TDILSFPFHE  APG +P +       E   LGDM+VSV YV RQ +RD+   A+ + +G +   G        +RG SGAMA  F +Q RL  L++HG+ HL+G+DHETD DY  MV +E+RV+A
Sbjct:  247 VSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPG-IPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQ---ADWLEKGENLWSG--------ERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVLA 384          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A4D9DAX9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.820e-32
Identity = 71/150 (47.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:   22 VGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGELPQTTD----PEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMA 459
            V LWL++D  +R  N +YRGKR +TDILSFPFHE  APG +P +       E   LGDM+VSV YV RQ +RD+           SG           +RG SGAMA  F +Q RL  L++HG+ HL+G+DHETD +Y  MV +E+RV+A
Sbjct:  111 VSLWLTNDRSIREYNDRYRGKRTATDILSFPFHEYEAPG-VPTSESWALTGEVKDLGDMIVSVPYVQRQCQRDQVDWFEKGENLWSG-----------ERGASGAMARVFGVQDRLPFLVIHGVLHLLGFDHETDKEYNEMVKEEDRVLA 248          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A1Z5JES7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JES7_FISSO)

HSP 1 Score: 117 bits (292), Expect = 1.340e-29
Identity = 65/155 (41.94%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   10 EGWGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGEL--PQTTDPEQMYLGDMVVSVAYVARQLERDRQQAAN-DISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMAAM 465
            E +GV L L  D++++ +N + RG    TDILSFPF E + PG L  PQ   P+   LGD++V V YV R+ + D++     D                  +RGVSGAMA  +D + R+ +LL+HG+ HLVGYDHE D DYE MV +EE ++A +
Sbjct:   84 ETYGVSLELIGDEEMQEINLESRGVDAPTDILSFPFSEYIEPGTLEPPQFDIPDYYQLGDLLVDVPYVMRRCQEDKEYYEQLDXXXXXXXX---------XERGVSGAMARIYDAEERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEILAEL 229          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A7S1GRK6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRK6_CYCTE)

HSP 1 Score: 113 bits (282), Expect = 3.080e-29
Identity = 60/139 (43.17%), Postives = 83/139 (59.71%), Query Frame = 1
Query:   46 DKVRRLNRQYRGKRKSTDILSFPFHEGLAPGEL--PQTTDPEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVM 456
            ++++  NR+ R   + TDILSFP H+ L PG L  P+   P+   LGDM+V V YV R+ + D +    D                ++DRGVSGAM  EFD ++RL +LLVHG+ HLVGYDH  D DYE MV +E+ ++
Sbjct:    1 EEMQETNRETRDVDQPTDILSFPMHDALEPGVLMKPEIDIPQLYNLGDMMVDVPYVIRRCKEDEEWEYED----------------DDDRGVSGAMVEEFDPEKRLHMLLVHGMLHLVGYDHIDDEDYEVMVAKEDEIL 123          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A5D6Y445_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y445_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.900e-29
Identity = 60/139 (43.17%), Postives = 74/139 (53.24%), Query Frame = 1
Query:   16 WGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGELPQTTDPEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAM 432
            W VG+ L++D  +RRLNR +R K K TDILSFPFH+   PG  P+    E+ YLGDM +S AYV RQ E     AA                                 L+ R+ +LL HGLCHL+GYDHETD D+E M
Sbjct:   42 WDVGVMLTTDAHMRRLNRTHRQKDKPTDILSFPFHQVRRPGRFPRVRSREERYLGDMYISPAYVRRQCESGELDAAE-------------------------------TLETRMPVLLAHGLCHLLGYDHETDEDFERM 149          
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Match: A0A1Z5K9I9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9I9_FISSO)

HSP 1 Score: 115 bits (288), Expect = 5.050e-29
Identity = 65/155 (41.94%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   10 EGWGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGEL--PQTTDPEQMYLGDMVVSVAYVARQLERDRQQAAN-DISRGASGSGGNGIGEEEEDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEERVMAAM 465
            E +GV L L  D++++ +N + RG    +DILSFPF + + PG L  PQ   P+   LGD++V V YV R+ + D++     D S                +RGVSGAMA  +D + R+ +LLVHG+ HLVGYDHE D DYE MV +EE ++A +
Sbjct:   82 ETYGVSLELIGDEEMQAVNLESRGVDAPSDILSFPFSDYIEPGTLEPPQFDIPDYYQLGDLLVDVPYVMRRCQEDKEYYEQLDESXXXXXX---------XERGVSGAMARIYDAEERIHMLLVHGMLHLVGYDHEDDDDYELMVAKEEEILAEL 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6209.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8A0_9STRA7.540e-4046.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FZG5_ECTSI1.360e-3949.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0XVF3_AURAN3.950e-3846.45Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2RF28_9STRA1.390e-3550.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7UC15_9STRA3.640e-3248.67Rrna maturation factor n=1 Tax=Nannochloropsis gad... [more]
A0A4D9DAX9_9STRA6.820e-3247.33Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5JES7_FISSO1.340e-2941.94Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S1GRK6_CYCTE3.080e-2943.17Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A5D6Y445_9STRA3.900e-2943.17Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1Z5K9I9_FISSO5.050e-2941.94Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6209contigP-wetherbeei_contig6209:10..805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZG5
Preferred nameYBEY
PFAMsUPF0054
Model size465
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons3
Evalue2.23e-40
EggNOG OGsCOG0319@1|root,2R6QZ@2759|Eukaryota
Ec32 ortholog descriptionEndoribonuclease YbeY
Ec32 orthologEc-19_003220.1
Descriptionmetalloendopeptidase activity
Cds size465
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.2902942-CDS-P-wetherbeei_contig6209:9..1591683186897.2902942-CDS-P-wetherbeei_contig6209:9..159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6209 10..159 +
1683186897.302399-CDS-P-wetherbeei_contig6209:442..5371683186897.302399-CDS-P-wetherbeei_contig6209:442..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6209 443..537 +
1683186897.3131113-CDS-P-wetherbeei_contig6209:585..8051683186897.3131113-CDS-P-wetherbeei_contig6209:585..805Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6209 586..805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6209.1.1prot_P-wetherbeei_contig6209.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6209 10..805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6209.1.1

>prot_P-wetherbeei_contig6209.1.1 ID=prot_P-wetherbeei_contig6209.1.1|Name=mRNA_P-wetherbeei_contig6209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
LRAEGWGVGLWLSSDDKVRRLNRQYRGKRKSTDILSFPFHEGLAPGELPQ
TTDPEQMYLGDMVVSVAYVARQLERDRQQAANDISRGASGSGGNGIGEEE
EDRGVSGAMAGEFDLQRRLELLLVHGLCHLVGYDHETDGDYEAMVVQEER
VMAAM
back to top

mRNA from alignment at P-wetherbeei_contig6209:10..805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6209.1.1 ID=mRNA_P-wetherbeei_contig6209.1.1|Name=mRNA_P-wetherbeei_contig6209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=796bp|location=Sequence derived from alignment at P-wetherbeei_contig6209:10..805+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCGGGCGGAGGGATGGGGCGTCGGCTTGTGGCTCTCGTCCGACGACAA GGTGCGGAGGCTCAACCGGCAGTACCGCGGCAAGCGCAAGTCGACCGACA TCCTGTCATTTCCATTCCACGAGGGACTCGCCCCTGGAGAGCTGCCGCAG GTGAGGAGTGGGAAAGACCGCCGGCTCTCTTCTGGATGAAAACGCGTTAG AACTGTCGTAGAACTGATGATAATCTTTTGCTGTATATTGGTGTCCAACC TTGCATTGGTACCCAGGAAGTGCTGCTAGATAGTAACCTAAAAGAAGCAC CTAAGAGGTTGCTCGATAAACAAGCGTGTTGGCAGACGGCGACCGCGACT CTTCTTTTAATCCGTTTCAGTCCTGCCCGCCAATCCGGTTTCCTTGTCCA CTCGCTGGCAACATTCCCTTCTTCTTTGGCCAGACGACGGATCCGGAGCA AATGTACCTCGGCGACATGGTGGTTTCCGTGGCCTACGTGGCCCGCCAGC TGGAACGGGACAGGCAACAGGCGGCAAAGTGCAACGTCGAAAACGGCACC GGCTGCAGCAGCAGCTCTGGCGGAAGTGACATCAGCCGCGGCGCTAGCGG AAGCGGCGGCAATGGCATTGGAGAAGAAGAGGAAGACCGCGGCGTGAGCG GCGCCATGGCCGGCGAGTTCGACCTGCAGCGGCGGCTCGAATTGCTGCTG GTTCACGGCCTGTGCCACCTCGTCGGCTACGACCACGAAACGGACGGCGA CTACGAGGCCATGGTGGTGCAGGAGGAGCGGGTCATGGCGGCCATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6209:10..805+

>mRNA_P-wetherbeei_contig6209.1.1 ID=mRNA_P-wetherbeei_contig6209.1.1|Name=mRNA_P-wetherbeei_contig6209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig6209:10..805+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCGGGCGGAGGGATGGGGCGTCGGCTTGTGGCTCTCGTCCGACGACAA
GGTGCGGAGGCTCAACCGGCAGTACCGCGGCAAGCGCAAGTCGACCGACA
TCCTGTCATTTCCATTCCACGAGGGACTCGCCCCTGGAGAGCTGCCGCAG
ACGACGGATCCGGAGCAAATGTACCTCGGCGACATGGTGGTTTCCGTGGC
CTACGTGGCCCGCCAGCTGGAACGGGACAGGCAACAGGCGGCAAATGACA
TCAGCCGCGGCGCTAGCGGAAGCGGCGGCAATGGCATTGGAGAAGAAGAG
GAAGACCGCGGCGTGAGCGGCGCCATGGCCGGCGAGTTCGACCTGCAGCG
GCGGCTCGAATTGCTGCTGGTTCACGGCCTGTGCCACCTCGTCGGCTACG
ACCACGAAACGGACGGCGACTACGAGGCCATGGTGGTGCAGGAGGAGCGG
GTCATGGCGGCCATG
back to top