mRNA_P-wetherbeei_contig6206.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6206.1.3
Unique NamemRNA_P-wetherbeei_contig6206.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 7.640e-91
Identity = 151/263 (57.41%), Postives = 186/263 (70.72%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQCTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSMGREPDPAR---RAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRK 1170
            WGP+T WHHL CTVF+ T+P +++GY DL    Q  +E++V  SQ E D+ YEPI P  LVR EWTE+ + P D+   LL YQ EGLAWM  QE  +Y GGILADEMGMGKT+Q I   +++R + KD+    +W   E  MG  P  A    R GTLV+CP +AL QW SE+ +FVK   L V +HHG+KRA+ A+DL  ADVVLTTYAI E ++RK  A  KVACPDCG+ LYP+KM +HRKYFCG+SAQRTEAQAKTQRK
Sbjct:   37 WGPSTQWHHLMCTVFKVTTPEEVEGYGDLDDAAQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTEKANCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMG--PGGASKESRGGTLVVCPTIALKQWHSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 297          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 5.690e-86
Identity = 151/263 (57.41%), Postives = 186/263 (70.72%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQCTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSMGREPDPAR---RAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRK 1170
            WGP+T WHHL CTVF+ T+P +++GY DL    Q  +E++V  SQ E D+ YEPI P  LVR EWT++   P D+   LL YQ EGLAWM  QE  +Y GGILADEMGMGKT+Q I   +++R + KD+    +W   E  MG  P  A    R GTLV+CP +AL QW+SE+ +FVK   L V +HHG+KRAS A+DL  ADVVLTTYAI E ++RK  A  KVACPDCG+ LYP+KM +HRKYFCG+SAQRTEAQAKTQRK
Sbjct:  251 WGPSTQWHHLMCTVFKVTTPEEVEGYGDLDDAAQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKAKCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMG--PGGASKESRGGTLVVCPTIALKQWQSELARFVKPGILKVVIHHGAKRASLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 511          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A836CRA2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA2_9STRA)

HSP 1 Score: 290 bits (743), Expect = 2.080e-85
Identity = 147/263 (55.89%), Postives = 184/263 (69.96%), Query Frame = 1
Query:  403 TAWHHLQCTVFQCTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYH-GGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSM-----GREPDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRKK 1173
            TAWHHL C V  C +  DI+GYDDL  + Q  +++RV+ S+ + DE Y+PI+P  L+R  W ++   P +L  PLL YQ EGL W+  QE  E H GGILADEMG  KTIQ ISL L++RP  KD+ Q + W A E  M     G      RR GTLVICPL+AL QWR+EIE+FV++ GL+V  +HG+ RA   + L DADVVLTTYA+ +ADYR+M A+ KV CPDCG+ LYP+K+ LHRKYFCGE A+RT AQAKTQRKK
Sbjct:    2 TAWHHLACVVPHCNTAADIEGYDDLPEEQQQVLQERVDESRGQVDELYQPINPDDLIRKAWDKKAPQPPELLSPLLPYQLEGLGWLLHQELEEEHRGGILADEMG--KTIQAISLMLANRPHAKDKQQCSAWTAAEAGMEFPTLGNADTAPRRGGTLVICPLIALTQWRAEIERFVEDGGLSVVTYHGADRAKGTRGLADADVVLTTYAVVQADYRRMVAKRKVKCPDCGKALYPDKLFLHRKYFCGEGAERTAAQAKTQRKK 262          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A7S1XLE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLE0_9STRA)

HSP 1 Score: 269 bits (688), Expect = 4.190e-82
Identity = 135/261 (51.72%), Postives = 179/261 (68.58%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQ-CTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSMGREPDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRK 1170
            +G  T W HL+C  F    SP D+ G+  L  + Q A+  R++ +Q+E      P+DP+  VRA WTE+  TP D+ +PLL YQ+EGLAWM  QE +++ GGILADEMGMGKT+QTI+  ++HRP  +       W A E + G  PD A R GTLVICP++ALLQW++EIEKF  E  L V V+HG+KR     +L+ ADVVLTTY++  ADY K+ A TK+ CPDCGR+ YP+K  LH++YFCG+ AQRTEAQ+ TQR+
Sbjct:  205 FGLYTRWLHLKCAWFTGIQSPEDVAGWAALDEESQDAIADRLDKTQSEVAVDMRPVDPNECVRAAWTEKAATPVDIRLPLLPYQQEGLAWMLHQEKSDHRGGILADEMGMGKTLQTIATMVAHRPGPE---HARAWAAAERTHGLTPDAAGRCGTLVICPVIALLQWKAEIEKFTHEGALNVVVYHGAKRTKDLAELRRADVVLTTYSVVMADYNKVMAPTKITCPDCGRRFYPDKYRLHKQYFCGDDAQRTEAQSLTQRR 462          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.350e-81
Identity = 144/262 (54.96%), Postives = 181/262 (69.08%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQ--CTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSMGREPDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRK 1170
            +G  T W HL CT+F     S   I+GY+ L    Q  V+KRV  S+ E DE  +PID S LVR EWT Q + P  L +P+L YQ+EGL WM+RQE  E+HGGILADEMGMGKTIQ I++ L++RP +     +  W   E S GR PDP  RAGTLV+CPL+ALLQW++EI +F +E  LTV V+HGS R  +   LQ ADVVLTTY+I EA+YRKM +  KV C DCG++ YP+K+ LH++YFCGE A  T AQA+TQRK
Sbjct:  146 FGIVTRWQHLPCTIFAEYLESEESIEGYEYLTEGQQALVKKRVAESREEEDEDSKPIDASELVRKEWTTQREPPETLVLPILPYQKEGLGWMYRQEQVEHHGGILADEMGMGKTIQAIAVMLANRPSEL---HSEAWTRQEASHGRAPDPCMRAGTLVVCPLIALLQWQTEIARFTREGSLTVLVYHGSSREDAKALLQQADVVLTTYSIVEAEYRKMMSPEKVKCEDCGKRFYPDKLRLHKRYFCGEGAVLTAAQARTQRK 404          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A7R9U350_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U350_9STRA)

HSP 1 Score: 264 bits (674), Expect = 4.420e-79
Identity = 131/265 (49.43%), Postives = 175/265 (66.04%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQ-CTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSMGREPDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRKKSKH 1182
            +G  T W HL C  F     P D+ G+  L  + +  +  R+E +Q++       ++P   VR  WTE+  TP D+ +PLL YQ+EGLAWM  QE +++ GGILADEMGMGKT+QTI+  + +RP  + +   A W   E   G +PD   R GTLVICP++ALLQWR+EIEKF +E  L V ++HG KR S  ++LQ ADVVLTTY++ +ADY K+ A TK++CPDCG++ YP+K  LHRKYFCG  AQRT AQA TQR+   H
Sbjct:  231 FGLYTRWLHLSCAYFTGIRKPEDVKGFTALDEEQRAQLTARLEETQDKVPADMRAVEPDACVRKAWTEKRATPKDIKLPLLPYQQEGLAWMIHQEESDHRGGILADEMGMGKTLQTIATIVENRPGPEHE---AAWTEAERKHGLDPDQRVRCGTLVICPVIALLQWRAEIEKFTRENCLNVMIYHGQKRTSDVRELQAADVVLTTYSVVQADYSKVLAPTKISCPDCGKRFYPDKFRLHRKYFCGAQAQRTSAQALTQRRSGAH 492          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA)

HSP 1 Score: 259 bits (661), Expect = 7.850e-73
Identity = 142/281 (50.53%), Postives = 177/281 (62.99%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQ--CTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVE---------------TSMGRE-PDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRKKSK 1179
            WG  T W HL CTVF     S  ++DG+ DL    +  V++R   S NE DE  EPIDP  LVR  W + ++   +L MPLL YQ+EGL WM  QE  + HGGILADEMGMGKTIQ I+L L +RPD  D  Q  +W A +               TS   E P+P  R GTL++ P VA+ QW++EI +F KE  LTV V+HGS R +SA DL   D+VLT+Y I E +YRK  A TKV C  C +K YP+K+ +HRKYFCGESAQRT AQA TQ+KK++
Sbjct:   69 WGLFTRWQHLDCTVFHKGINSVEELDGFSDLNTQQKDLVKERFALSANEIDEDMEPIDPDELVRKAWEKPVEPSPNLLMPLLPYQKEGLGWMVNQEQNDVHGGILADEMGMGKTIQAIALMLQNRPDMSDFAQLREWAASDARHAAPAIADSSTSSTSSSSECPEPMVRCGTLIVLPTVAIRQWQTEIARFTKEGSLTVKVYHGSDRNTSALDLTKTDIVLTSYKILEIEYRKATAGTKVTCRVCQKKFYPDKLRVHRKYFCGESAQRTAAQALTQKKKAR 349          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A6G0XA82_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XA82_9STRA)

HSP 1 Score: 196 bits (498), Expect = 3.210e-51
Identity = 109/269 (40.52%), Postives = 155/269 (57.62%), Query Frame = 1
Query:  376 LTYIMWGPNTAWHHLQCTVFQCTSPLDIDGYDDLMPDDQMAVEK-RVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDAVETSMGREPDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRKKSK 1179
            L +  +G NT + H++CT+     P+++DG  DL P+D   V+K  +E S+   ++   P+     ++ +          LT  LL YQ+EGLAWM  QE ++Y GGILADEMGMGKTIQ ISL L +                   + R        GTL+ICP++A +QW+SEIE+FV+   L++ ++HG KR + A  +   DVVLTTY+I E++ RK+    KVAC  C +   PEK+I H KYFCG  A +T+ QAK Q+ K K
Sbjct:  489 LVHSRFGLNTYYKHVECTLLNNEIPIELDGLRDLDPEDLAYVQKYMLENSKRGVEDERVPLSDEHFIKRDILPAAKPSPHLTASLLPYQQEGLAWMKAQEASKYRGGILADEMGMGKTIQAISLLLEN-----------------VKIKRSKGMLMGGGTLIICPVIACMQWKSEIERFVESNHLSILLYHGPKRTNLATHIASYDVVLTTYSILESEGRKLMEAEKVACAYCKKLFVPEKLIPHNKYFCGPDAHKTKKQAKQQKGKGK 740          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A1Z5KAJ8_FISSO (DNA repair protein RAD16 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAJ8_FISSO)

HSP 1 Score: 195 bits (496), Expect = 5.840e-51
Identity = 125/292 (42.81%), Postives = 165/292 (56.51%), Query Frame = 1
Query:  409 WHHLQCTVFQCTSPL--DIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQM-DTPADLTMPLLAYQREGLAWMHRQEHT--EYHGGILADEMGMGKTIQTISLALSHRPD-----------------DKDQDQTAQWDAV------ETSMGREPDPAR--------RAGTLVICPLVALLQWRSEIEKFV-KEKGLTVCVHHGSKRASSAK--DLQDADVVLTTYAIAEADYRKMQARTKVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQR 1167
            + HL+C +F        D+ G+  L  +DQ A+  R++ S  E  +  E + P  LV+  ++ ++ D P  LT  LL +Q EG +WM+ QE    E  GGILADEMGMGKT+QTI   L +RP                  +K Q + A W         E  M   P+ AR        RAGTLV+CP+VAL QW+SE+EKFV  E GLTV ++HG KR S      +   DVVLTTY + E D+RKM +  KVACP+CG K    K+ +H KYFCGE+AQRTEAQA+ +R
Sbjct:  244 YRHLECAIFDSNVQTLQDVGGWQSLKVEDQEALSARIQESLKEIKQEEEELQPDELVQESFSGEIRDPPKGLTASLLPFQVEGASWMYCQEVNTPEIRGGILADEMGMGKTLQTIVSMLDNRPILQHSPPGVKHPPSSPDLEKRQAEEALWAKALEEWKHEMDMNNVPEKARPKGKKGGTRAGTLVVCPVVALSQWKSELEKFVDSEAGLTVGIYHGPKRNSEMPLDMMHKYDVVLTTYQVLEQDFRKMVSPNKVACPNCGGKFKISKLKIHLKYFCGENAQRTEAQARQRR 535          
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Match: A0A482RXU1_9ARCH (PARP-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXU1_9ARCH)

HSP 1 Score: 182 bits (462), Expect = 3.790e-50
Identity = 104/229 (45.41%), Postives = 136/229 (59.39%), Query Frame = 1
Query:  391 WGPNTAWHHLQCTVFQ--CTSPLDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMDTPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLALSHRPDDKDQDQTAQWDA----------VETSMGREPDPARRAGTLVICPLVALLQWRSEIEKFVKEKGLTVCVHHGSKRASSAKDLQDA--DVVLTTYAIAEADYRK 1035
            WG  T W HL CT+F    TS   IDGY  L P D++ V++R EAS++E DE   PIDP  L+R  W + ++  ADL MPLL YQ+EGL W   QE ++ HGGILADEMGMGKTIQ I+L L +RP   D +    W A           ETS      P  RAGTL++ P VA+ QW+ EI +F +E  L V V+HGS R    +D+ +   DVV+T+Y ++  +  K
Sbjct:   78 WGLFTRWQHLDCTIFHKSLTSVDQIDGYLILSPSDKLLVQERFEASKHEVDEDSVPIDPDELIRKSWNQPLEPHADLLMPLLPYQKEGLGWCVAQERSDVHGGILADEMGMGKTIQAIALMLHNRPARGDAELEEVWAASDNAHAHSTLTETSSIHAQLP--RAGTLIVLPTVAIRQWQLEIVRFTRESSLRVKVYHGSDRNLGVEDITEGEYDVVITSYKVSSCNLDK 304          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6206.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUS9_ECTSI7.640e-9157.41DNA repair protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JN56_9PHAE5.690e-8657.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CRA2_9STRA2.080e-8555.89P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1XLE0_9STRA4.190e-8251.72Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7TXY3_9STRA1.350e-8154.96Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7R9U350_9STRA4.420e-7949.43Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3MHT9_9STRA7.850e-7350.53Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6G0XA82_9STRA3.210e-5140.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1Z5KAJ8_FISSO5.840e-5142.81DNA repair protein RAD16 n=2 Tax=Fistulifera solar... [more]
A0A482RXU1_9ARCH3.790e-5045.41PARP-type domain-containing protein n=1 Tax=archae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6206contigP-wetherbeei_contig6206:370..3128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FUS9
PFAMsHelicase_C,SNF2_N
Model size1299
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.25e-91
EggNOG OGsCOG0141@1|root,KOG1002@2759|Eukaryota
Ec32 ortholog descriptionSNF2-related Zn finger helicase protein
Ec32 orthologEc-06_000960.1
Descriptionpyrimidine dimer repair by nucleotide-excision repair
Cds size1299
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6206.1.3prot_P-wetherbeei_contig6206.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6206 370..3128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.0600412-CDS-P-wetherbeei_contig6206:369..5591683186897.0600412-CDS-P-wetherbeei_contig6206:369..559Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 370..559 -
1683186897.078061-CDS-P-wetherbeei_contig6206:740..8451683186897.078061-CDS-P-wetherbeei_contig6206:740..845Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 741..845 -
1683186897.097889-CDS-P-wetherbeei_contig6206:1109..12281683186897.097889-CDS-P-wetherbeei_contig6206:1109..1228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 1110..1228 -
1683186897.1100686-CDS-P-wetherbeei_contig6206:1469..17021683186897.1100686-CDS-P-wetherbeei_contig6206:1469..1702Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 1470..1702 -
1683186897.1227717-CDS-P-wetherbeei_contig6206:2005..21651683186897.1227717-CDS-P-wetherbeei_contig6206:2005..2165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 2006..2165 -
1683186897.1406407-CDS-P-wetherbeei_contig6206:2357..24631683186897.1406407-CDS-P-wetherbeei_contig6206:2357..2463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 2358..2463 -
1683186897.1530392-CDS-P-wetherbeei_contig6206:2742..31281683186897.1530392-CDS-P-wetherbeei_contig6206:2742..3128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6206 2743..3128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6206.1.3

>prot_P-wetherbeei_contig6206.1.3 ID=prot_P-wetherbeei_contig6206.1.3|Name=mRNA_P-wetherbeei_contig6206.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=433bp
MADVASDSGDSGSEFEADSSSSTESDSDKPGEFEPESDVEEEKPKKRSPP
KATPPSKTARGRGEGEGKSEGESKGKAGGAPAKGAKRQSSSPASPSAGKK
GKAKAKADAESSEVQPAASAAEQLGLTYIMWGPNTAWHHLQCTVFQCTSP
LDIDGYDDLMPDDQMAVEKRVEASQNETDERYEPIDPSTLVRAEWTEQMD
TPADLTMPLLAYQREGLAWMHRQEHTEYHGGILADEMGMGKTIQTISLAL
SHRPDDKDQDQTAQWDAVETSMGREPDPARRAGTLVICPLVALLQWRSEI
EKFVKEKGLTVCVHHGSKRASSAKDLQDADVVLTTYAIAEADYRKMQART
KVACPDCGRKLYPEKMILHRKYFCGESAQRTEAQAKTQRKKSKHEGGAAV
GGAAALVNEEETESEVEDDGADASRKGGKAKGG
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mRNA from alignment at P-wetherbeei_contig6206:370..3128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6206.1.3 ID=mRNA_P-wetherbeei_contig6206.1.3|Name=mRNA_P-wetherbeei_contig6206.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2759bp|location=Sequence derived from alignment at P-wetherbeei_contig6206:370..3128- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGACGTCGCGTCTGACAGTGGCGACAGTGGCAGCGAGTTTGAAGC CGACTCCTCTTCCAGCACCGAAAGTGACAGCGACAAGCCTGGAGAGTTTG AGCCCGAGAGTGACGTGGAAGAAGAGAAGCCCAAGAAGCGCTCGCCACCC AAAGCCACACCACCGAGCAAGACGGCGAGGGGGAGAGGGGAAGGCGAGGG CAAAAGCGAAGGCGAGAGCAAGGGCAAGGCTGGCGGCGCCCCGGCGAAGG GCGCCAAACGGCAGAGCTCGAGCCCGGCTTCCCCATCCGCGGGCAAGAAG GGCAAGGCGAAAGCCAAAGCTGATGCTGAGAGCAGTGAGGTCCAGCCAGC GGCCAGCGCCGCCGAGCAGCTCGGCCTGACGTACATGTGCGACATGGCCA AGACAGGCCGAGCGCAGTGCCGGCGGTGCGAAACCAAGATCGCCAAGGGC CTGCTGCGCGTCGGCGTGGTGAGTGAGCGCTTCACCGTCTTCCTTCTATC ACTTCCGTCTCATTTTTCTATTTCACGTAAATTTGCGACGATGGCGCTGT AAATGTGTTCCCTCACTCTGGCAAATCCAGGGGCAGCTGGTAACCGCAAA ACCTTACAGCATTTCCTGTTCTCTCTCTATCTCATTTCCCCTTACGCTCG CAAGGTGACGGAGAGCATGTGGGGGCCGAATACGGCGTGGCACCACCTGC AGTGCACCGTCTTCCAGTGCACCTCGCCGCTGGACATCGACGGCTACGAT GACCTCATGCCCGACGATCAGGTGAAACTGGCACCCTGTCTGCTATTTTG TTTTCGGAGGGGGGGTTGGGGAATTTTTATTTGCCGGGAAGAGGCGAACG GCATTTGATCGATGCCGCCACTTCTGAGTTGCTCATGTTGTGCCTTAGTT GCAGCATGCTGAACGTCATTGTCTTTCGACCTGTGAACACTGCCGTCCTT TCCGAGCGAGTAGATGGCGGTGGAGAAGCGCGTTGAAGCGTCGCAGAACG AGACGGACGAGCGCTATGAGCCCATCGACCCGAGCACGCTCGTTCGCGCC GAGTGGACGGAGCAGATGGACACGCCCGCGGACCTTACCATGCCGCTTCT CGCCTACCAGCGCGAAGGCCTCGGTGCGTTGTGTGTGCTCTCTTTTCCTG TATTATTTTTAGCTGCCTGCCCTTTTGTGCTGCTTCTACATTTGTAGCCT GGTCCTGCCATTGTTCGATCTCCACCTCCCCGGTTGCCGCCGCCGCCGCC GCCACCGCCACCGCTATCGTCGCCGCTGCTGCTTCTTGACCTGCTGCTTC CGCCCCCTTTCCCTCTGCCGCTGCTTCCCCCCTTGCTACTGCGACCTCTG CCGCTCCGCTACCGGTGTTCTTTCAACGTTGCCATGTGTCCGTCGCCTCC CGTCATCGCTGGTCCATGTTCGACAGCGTGGATGCACCGGCAGGAGCACA CGGAATACCATGGCGGCATCCTCGCCGATGAGATGGGCATGGGCAAGACC ATCCAGACCATCTCCCTCGCGCTCTCCCACCGCCCGGACGACAAGGACCA AGATCAGACCGCGCAGTGGGACGCCGTCGAGACCTCGATGGGCCGCGAGC CGGACCCAGCGCGGCGGGCGGGCACGCTTGTCATCTGCCCGCTGGTGGCG CTGCTGCAGGTGAGGAGGAATGGCGCTTTTTGAATGACGCGTTAAGAGAA CCTGCGATTGTTCCATAAGCGAGATTAGTAGAGAGGGCTTTCCGAGCTTT CCGATGTTCCACTTTTCCGTCTACAGCCTACCTGTTTAACAGTTGGTATG GAGCATGATGCTTGTTTTTTCATCGCCTCGTTTCTCAAAACTCGCCGTGC CGCTCTGCCTTCGCTTTCTCTGCTGCTGTCCGCCGTGCGTCGCATCGCAG TGGCGTTCGGAGATCGAGAAGTTTGTGAAGGAAAAGGGGTTGACGGTGTG CGTCCACCACGGCAGCAAGCGGGCGTCGTCCGCGAAGGACCTGCAGGACG CCGACGTGGTGCTGACAACGTAAAGAACTTTCCGGCGGGTTCCCTAGCTC CGGTCCGCCAGTGCCTGCCATTGTCGTTGGCTCCGCCGGGTTGCCTCTCA TGACGCTGGTGCCCACTTCCGCTGCCATCGCCCTGTCTTTGGCGGCTCCG CGACTCTGGCGCCTGCTTGCGTCTCCACTGGCGCAATCGACGATTGTGGC GACCGGCGGCGCTTTACTTACCTCCTTCCTGCTGCTGCTACCACTGTCCC CCCCCACAATTTTTTTTGTTTGCTGTCGGTCAGCTACGCCATCGCCGAGG CCGACTACCGCAAGATGCAGGCACGAACTAAAGTCGCCTGCCCCGACTGC GGCCGCAAACTCTACCCGGAGAAGATGATCCTCCACAGGTATCGGTGGCG GAATGCTCAGGCGAGATGGATGGCTTGCCCTGTCTGTCCAGAGGGGCTTA TTCTTTGCGCCTGTCCTCGTTTTCTCTTGAGCTGGTGATCGCGTTTACCT TTGCCCGTGAGCTTCATGCTTTGTTAATTATGTACTGCTTCTGGTCCGTT CCGAATGCTCGTCTGACAGGAAGTACTTCTGCGGCGAGAGCGCGCAAAGG ACAGAGGCGCAGGCCAAGACGCAGCGCAAGAAGAGCAAGCACGAGGGCGG CGCCGCTGTCGGAGGCGCAGCTGCGCTGGTGAACGAGGAGGAGACTGAGA GCGAGGTGGAGGACGACGGCGCCGACGCCAGCCGCAAGGGCGGCAAGGCG AAGGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6206:370..3128-

>mRNA_P-wetherbeei_contig6206.1.3 ID=mRNA_P-wetherbeei_contig6206.1.3|Name=mRNA_P-wetherbeei_contig6206.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1299bp|location=Sequence derived from alignment at P-wetherbeei_contig6206:370..3128- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGACGTCGCGTCTGACAGTGGCGACAGTGGCAGCGAGTTTGAAGC
CGACTCCTCTTCCAGCACCGAAAGTGACAGCGACAAGCCTGGAGAGTTTG
AGCCCGAGAGTGACGTGGAAGAAGAGAAGCCCAAGAAGCGCTCGCCACCC
AAAGCCACACCACCGAGCAAGACGGCGAGGGGGAGAGGGGAAGGCGAGGG
CAAAAGCGAAGGCGAGAGCAAGGGCAAGGCTGGCGGCGCCCCGGCGAAGG
GCGCCAAACGGCAGAGCTCGAGCCCGGCTTCCCCATCCGCGGGCAAGAAG
GGCAAGGCGAAAGCCAAAGCTGATGCTGAGAGCAGTGAGGTCCAGCCAGC
GGCCAGCGCCGCCGAGCAGCTCGGCCTGACGTACATCATGTGGGGGCCGA
ATACGGCGTGGCACCACCTGCAGTGCACCGTCTTCCAGTGCACCTCGCCG
CTGGACATCGACGGCTACGATGACCTCATGCCCGACGATCAGATGGCGGT
GGAGAAGCGCGTTGAAGCGTCGCAGAACGAGACGGACGAGCGCTATGAGC
CCATCGACCCGAGCACGCTCGTTCGCGCCGAGTGGACGGAGCAGATGGAC
ACGCCCGCGGACCTTACCATGCCGCTTCTCGCCTACCAGCGCGAAGGCCT
CGCGTGGATGCACCGGCAGGAGCACACGGAATACCATGGCGGCATCCTCG
CCGATGAGATGGGCATGGGCAAGACCATCCAGACCATCTCCCTCGCGCTC
TCCCACCGCCCGGACGACAAGGACCAAGATCAGACCGCGCAGTGGGACGC
CGTCGAGACCTCGATGGGCCGCGAGCCGGACCCAGCGCGGCGGGCGGGCA
CGCTTGTCATCTGCCCGCTGGTGGCGCTGCTGCAGTGGCGTTCGGAGATC
GAGAAGTTTGTGAAGGAAAAGGGGTTGACGGTGTGCGTCCACCACGGCAG
CAAGCGGGCGTCGTCCGCGAAGGACCTGCAGGACGCCGACGTGGTGCTGA
CAACCTACGCCATCGCCGAGGCCGACTACCGCAAGATGCAGGCACGAACT
AAAGTCGCCTGCCCCGACTGCGGCCGCAAACTCTACCCGGAGAAGATGAT
CCTCCACAGGAAGTACTTCTGCGGCGAGAGCGCGCAAAGGACAGAGGCGC
AGGCCAAGACGCAGCGCAAGAAGAGCAAGCACGAGGGCGGCGCCGCTGTC
GGAGGCGCAGCTGCGCTGGTGAACGAGGAGGAGACTGAGAGCGAGGTGGA
GGACGACGGCGCCGACGCCAGCCGCAAGGGCGGCAAGGCGAAGGGCGGG
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