mRNA_P-wetherbeei_contig6201.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A835ZHC0_9STRA (mRNA_cap_enzyme domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC0_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.760e-21 Identity = 57/110 (51.82%), Postives = 66/110 (60.00%), Query Frame = 2
Query: 26 FPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRA 355
FPGAMP N+CRA +AAVQ G+YF+SEKTDGVRYL+VV + +G CVLVDRKM FAV GG +A A GTVLDGELVH G + A
Sbjct: 384 FPGAMPVNMCRADIAAVQGGAYFISEKTDGVRYLLVVTEEGEGGGACVLVDRKMGCFAVAGGAALAKVFGA----------------------GTVLDGELVHRSGAHGA 471
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A7S2REU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REU1_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.200e-17 Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 2
Query: 26 FPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSEMGSVFAMR 424
FPGAMP N+C+ H+ +Q YFV+EKTDGVR L+V +G CVLVDR+M A + PG G +GTV+DGE+V++ RAVFM FD+L G S +G +F R
Sbjct: 405 FPGAMPVNMCKRHIREIQSKPYFVTEKTDGVRQLLVAVSDPNGGARCVLVDRQMQTRAFP--------------DSGPG----------GLPVGTVVDGEVVYNFTYRRAVFMVFDILRYGGESLVGRLFTER 513
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: D0NWZ3_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NWZ3_PHYIT) HSP 1 Score: 78.2 bits (191), Expect = 6.800e-13 Identity = 51/126 (40.48%), Postives = 63/126 (50.00%), Query Frame = 2
Query: 23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
+F G MP R H+ VQ YFVSEKTDGVRY +VV VLVDR AFA G D++ L GTVLDGELV H+ R VF++FD++A G ++E
Sbjct: 296 KFSGTMPVGFARWHIPLVQSREYFVSEKTDGVRYFLVVAGGTT-----VLVDRSNAAFAASGLDLLKLVLPE----------------------GTVLDGELVFHQKDKRYVFISFDIIATGPSAE 394
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: H3GV11_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GV11_PHYRM) HSP 1 Score: 77.8 bits (190), Expect = 9.400e-13 Identity = 51/126 (40.48%), Postives = 62/126 (49.21%), Query Frame = 2
Query: 23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
+F G MP R H+ VQ YFVSEKTDGVRY +VV VLVDR FA G D++ L GTVLDGELV H+ R VF+AFD++A G ++E
Sbjct: 336 KFSGTMPVGFARWHIPLVQSREYFVSEKTDGVRYFLVVAGGTT-----VLVDRSNSPFAASGLDLLKLVLPE----------------------GTVLDGELVFHQKDKRYVFIAFDIIATGPSAE 434
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A7S0MLD4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MLD4_9CRYP) HSP 1 Score: 73.9 bits (180), Expect = 2.140e-12 Identity = 53/125 (42.40%), Postives = 66/125 (52.80%), Query Frame = 2
Query: 11 GGE-VRFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLA 382
GGE FPG MP R + V YFVSEKTDGVRY +VV + +G+ VL+DRK +A+ APG+ +A A G GTVLDGE+V +R R VFM FD +A
Sbjct: 24 GGERADFPGTMPVGFSRRALRQVMAEDYFVSEKTDGVRYFLVVVER-EGKAAGVLLDRKFNAYT------------------APGIDEA----AAGLGPGTVLDGEVVWNRSWKRDVFMVFDGMA 125
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: K3W9X5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9X5_GLOUD) HSP 1 Score: 76.3 bits (186), Expect = 3.140e-12 Identity = 50/126 (39.68%), Postives = 60/126 (47.62%), Query Frame = 2
Query: 23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
+F G MP R H+ V+ YFVSEKTDGVRY +VV A VLVDR F G D++ L GTVLDGELV H+ NR VFM FD++A G +
Sbjct: 338 KFSGTMPVGFARWHIPLVKTREYFVSEKTDGVRYFLVVAGDA-----VVLVDRSNAPFVASGLDLLKLVLPE----------------------GTVLDGELVFHQRENRYVFMVFDIIATGPSQS 436
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: K0TI32_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI32_THAOC) HSP 1 Score: 76.3 bits (186), Expect = 3.270e-12 Identity = 54/128 (42.19%), Postives = 65/128 (50.78%), Query Frame = 2
Query: 26 FPGAMPSNLCRAHVAAVQ--EGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSEM 403
F G MP N R ++ VQ EG YF+SEKTDGVRYLMV S CVLVDR H E G A V A++ GTVLDGE+V HR R +F+ FD+LA+ T +
Sbjct: 404 FLGCMPVNFARHNIEEVQRSEGGYFLSEKTDGVRYLMVFTGST-----CVLVDRASH----ESGKAYQPKHRMAGDEPMDSVVKAIKP-------GTVLDGEVVVHRKLRRPIFIVFDVLAISATEPI 515
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A8K1CCX5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCX5_PYTOL) HSP 1 Score: 75.9 bits (185), Expect = 4.230e-12 Identity = 49/126 (38.89%), Postives = 61/126 (48.41%), Query Frame = 2
Query: 23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
+F G MP R H+ V+E Y+VSEKTDGVRY +VV VLVDR AF G D++ L GTVLDGELV H+ R VFM FD++A G ++
Sbjct: 330 KFAGTMPVGFARWHIPLVKEREYYVSEKTDGVRYFLVVAGGTT-----VLVDRSNTAFTTSGMDLLRLVLPE----------------------GTVLDGELVMHQKEKRYVFMVFDIIATGPSAS 428
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A484DRL0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRL0_BRELC) HSP 1 Score: 74.3 bits (181), Expect = 1.420e-11 Identity = 50/126 (39.68%), Postives = 64/126 (50.79%), Query Frame = 2
Query: 23 RFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
+F G MP R H+ VQ YFVSEKTDGVR+ +VV A G+ VL+DR FA G D++ L GTVLDGELV H+ R V++AFD++A G +E
Sbjct: 336 KFSGTMPVGFARWHIPLVQSREYFVSEKTDGVRFFLVV---AGGKT--VLIDRSNSPFAASGLDLLKLVLPE----------------------GTVLDGELVFHQKDKRYVYIAFDIIATGPFAE 434
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Match: A0A024GCJ9_9STRA (Uncharacterized protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GCJ9_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.420e-11 Identity = 51/130 (39.23%), Postives = 61/130 (46.92%), Query Frame = 2
Query: 11 GGEVRFPGAMPSNLCRAHVAAVQEGSYFVSEKTDGVRYLMVVCQSADGRKGCVLVDRKMHAFAVEGGDVIAAHLAAAAGSAAPGVADAVRKAAGGTLIGTVLDGELVHHRGRNRAVFMAFDLLALGQTSE 400
G RF G MP R H+ V++G Y VSEKTDGVRY +VV + VLVDR A+ G D + L GTVLDGE V H+ R VFMAFD++A G T
Sbjct: 336 GNRNRFNGTMPVGFARWHIPFVKKGEYHVSEKTDGVRYFLVVAGGST-----VLVDRSNAAYTTCGIDQLKLVLPE----------------------GTVLDGEFVFHQKEKRYVFMAFDIIATGPTEN 438 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6201.1.1 >prot_P-wetherbeei_contig6201.1.1 ID=prot_P-wetherbeei_contig6201.1.1|Name=mRNA_P-wetherbeei_contig6201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp RRRGRGGAVSGGDAVEFVPGARGGSAGGELLREREDGRRTLPDGRLPICGback to top mRNA from alignment at P-wetherbeei_contig6201:581..1646- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6201.1.1 ID=mRNA_P-wetherbeei_contig6201.1.1|Name=mRNA_P-wetherbeei_contig6201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1066bp|location=Sequence derived from alignment at P-wetherbeei_contig6201:581..1646- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6201:581..1646- >mRNA_P-wetherbeei_contig6201.1.1 ID=mRNA_P-wetherbeei_contig6201.1.1|Name=mRNA_P-wetherbeei_contig6201.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig6201:581..1646- (Phaeothamnion wetherbeei SAG_119_79)back to top |