mRNA_P-wetherbeei_contig62.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig62.2.1
Unique NamemRNA_P-wetherbeei_contig62.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig62.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig62contigP-wetherbeei_contig62:1300..2575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size966
Hectar predicted targeting categorysignal peptide
Exons3
Cds size864
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.913569-CDS-P-wetherbeei_contig62:1299..19071683186895.913569-CDS-P-wetherbeei_contig62:1299..1907Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig62 1300..1907 -
1683186895.9226515-CDS-P-wetherbeei_contig62:2107..21881683186895.9226515-CDS-P-wetherbeei_contig62:2107..2188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig62 2108..2188 -
1683186895.9315212-CDS-P-wetherbeei_contig62:2298..24731683186895.9315212-CDS-P-wetherbeei_contig62:2298..2473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig62 2299..2473 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.940973-UTR-P-wetherbeei_contig62:2473..25751683186895.940973-UTR-P-wetherbeei_contig62:2473..2575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig62 2474..2575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig62.2.1prot_P-wetherbeei_contig62.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig62 1300..2473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig62.2.1

>prot_P-wetherbeei_contig62.2.1 ID=prot_P-wetherbeei_contig62.2.1|Name=mRNA_P-wetherbeei_contig62.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=288bp
MRRPVFPFLLVLWRCIVIVGGNTTIGSILDSLVGQQKASLCLGFIPGAGY
PEGFGDSIGVYAYLLDYVLENNATFTFTSLQPSGHGTGDEFADMFGPVDL
TAEDLERPEDLPAVIRYAASCQWHTECDQREVAELVVGSARQERRLPEAT
SEPKTSSYDGRGNRRRRRRNRRGDCRRRLQGGDDGPEFQVDDEVANPGGQ
QPAAPKDTALPSYLPPSSPASPPPSLPSSPPPSPSPNPSPPLPPLPSLPL
SPPPLQPVLDFTKCTSGVVLMESGDKSYWADHVHNTGA
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mRNA from alignment at P-wetherbeei_contig62:1300..2575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig62.2.1 ID=mRNA_P-wetherbeei_contig62.2.1|Name=mRNA_P-wetherbeei_contig62.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1276bp|location=Sequence derived from alignment at P-wetherbeei_contig62:1300..2575- (Phaeothamnion wetherbeei SAG_119_79)
GGACAGCGAGTAAAAGAATCCAAGTTTCGCGCCCGGAAGCCATTTTTATA
AAATAATCGTCCACTTCCCACGCCCTCGCTGTGGACTAAGCTTGGCGTAC
GGATGAGAAGGCCAGTCTTTCCTTTCCTCTTGGTTTTGTGGAGATGCATC
GTTATTGTTGGCGGCAACACGACTATCGGTAGCATTCTTGACTCTCTCGT
CGGCCAGCAGAAGGCCAGCTTATGTCTCGGCTTCATCCCTGGAGCAGGCT
ACCCAGAGGGCTTTGGCGACTCAATAGGTGCGGCGAATCTCGCCTTCCTT
CGTGTTTGCTCCCTCTGGTGTAGATATGTAAGCTATCTTCCATTGCTTTG
GTGCTCCTATGTCACCCATGTCGTCGACGCTGCGCAGGGGTCTATGCATA
CCTTTTAGATTATGTGCTCGAGAACAATGCAACATTCACCTTTACCTCAC
TTCAACCGAGTGGCCATGGTAAGTAGCTGAAAGACCTCTTCTTCATTATT
CTGTTAATTTGCAGTACTTGGTCCCCTGACTAATATCTGTTTATGTGCCT
GTAAAGTTAGATCAGAGACCAGATGACGGAAAAGCTCGACAAAATGACAC
AGGAAAGCAACCCCCTGTTCAGGCAACAAAACCAGCTTATGCATCCCCAC
TGCCAAACTGTTTCGCAGGGACCGGCGATGAATTCGCTGATATGTTCGGC
CCCGTTGATCTCACCGCGGAAGATTTAGAACGGCCCGAAGACCTACCGGC
GGTGATCAGATACGCCGCCTCTTGCCAGTGGCATACGGAATGCGACCAAA
GGGAAGTCGCTGAACTGGTTGTCGGGAGCGCCAGGCAAGAGCGGCGGCTG
CCCGAGGCGACAAGCGAGCCAAAAACGTCTTCCTACGATGGCCGCGGCAA
TCGGCGACGCCGCCGCCGCAACCGCCGTGGCGACTGCCGCCGCCGGTTGC
AAGGCGGCGATGACGGCCCTGAATTTCAGGTTGACGACGAGGTTGCCAAT
CCAGGCGGGCAGCAACCGGCTGCTCCAAAAGATACGGCGCTACCGTCATA
CTTGCCGCCGTCGTCGCCGGCATCGCCACCGCCATCGCTGCCGTCATCGC
CCCCACCGTCACCATCGCCGAATCCGTCGCCGCCGCTGCCGCCGCTGCCG
TCGCTGCCGTTGTCACCGCCGCCGCTGCAACCTGTGCTTGACTTCACAAA
GTGCACAAGCGGCGTCGTGCTGATGGAGTCCGGGGACAAGAGTTACTGGG
CCGACCACGTTCACAATACCGGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig62:1300..2575-

>mRNA_P-wetherbeei_contig62.2.1 ID=mRNA_P-wetherbeei_contig62.2.1|Name=mRNA_P-wetherbeei_contig62.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=864bp|location=Sequence derived from alignment at P-wetherbeei_contig62:1300..2575- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAGGCCAGTCTTTCCTTTCCTCTTGGTTTTGTGGAGATGCATCGT
TATTGTTGGCGGCAACACGACTATCGGTAGCATTCTTGACTCTCTCGTCG
GCCAGCAGAAGGCCAGCTTATGTCTCGGCTTCATCCCTGGAGCAGGCTAC
CCAGAGGGCTTTGGCGACTCAATAGGGGTCTATGCATACCTTTTAGATTA
TGTGCTCGAGAACAATGCAACATTCACCTTTACCTCACTTCAACCGAGTG
GCCATGGGACCGGCGATGAATTCGCTGATATGTTCGGCCCCGTTGATCTC
ACCGCGGAAGATTTAGAACGGCCCGAAGACCTACCGGCGGTGATCAGATA
CGCCGCCTCTTGCCAGTGGCATACGGAATGCGACCAAAGGGAAGTCGCTG
AACTGGTTGTCGGGAGCGCCAGGCAAGAGCGGCGGCTGCCCGAGGCGACA
AGCGAGCCAAAAACGTCTTCCTACGATGGCCGCGGCAATCGGCGACGCCG
CCGCCGCAACCGCCGTGGCGACTGCCGCCGCCGGTTGCAAGGCGGCGATG
ACGGCCCTGAATTTCAGGTTGACGACGAGGTTGCCAATCCAGGCGGGCAG
CAACCGGCTGCTCCAAAAGATACGGCGCTACCGTCATACTTGCCGCCGTC
GTCGCCGGCATCGCCACCGCCATCGCTGCCGTCATCGCCCCCACCGTCAC
CATCGCCGAATCCGTCGCCGCCGCTGCCGCCGCTGCCGTCGCTGCCGTTG
TCACCGCCGCCGCTGCAACCTGTGCTTGACTTCACAAAGTGCACAAGCGG
CGTCGTGCTGATGGAGTCCGGGGACAAGAGTTACTGGGCCGACCACGTTC
ACAATACCGGCGCG
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