mRNA_P-wetherbeei_contig62.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig62.1.1
Unique NamemRNA_P-wetherbeei_contig62.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig62.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig62contigP-wetherbeei_contig62:94..874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categoryother localisation
Exons2
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.8502681-UTR-P-wetherbeei_contig62:93..2461683186895.8502681-UTR-P-wetherbeei_contig62:93..246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig62 94..246 -
1683186895.8839023-UTR-P-wetherbeei_contig62:867..8741683186895.8839023-UTR-P-wetherbeei_contig62:867..874Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig62 868..874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.8612063-CDS-P-wetherbeei_contig62:246..5431683186895.8612063-CDS-P-wetherbeei_contig62:246..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig62 247..543 -
1683186895.86955-CDS-P-wetherbeei_contig62:786..8671683186895.86955-CDS-P-wetherbeei_contig62:786..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig62 787..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig62.1.1prot_P-wetherbeei_contig62.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig62 247..867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig62.1.1

>prot_P-wetherbeei_contig62.1.1 ID=prot_P-wetherbeei_contig62.1.1|Name=mRNA_P-wetherbeei_contig62.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MRAALPDFNMTLMAPPNVSARGALDGMIGADVLISGTSGFSRAAAALRNS
GIAIAPTAEYGWNELDTTETVFVVPLSQPIPGAEDAIGCKLFGSAVTAAV
RADAVAHIRRALAEHPLMPQCGTGT*
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mRNA from alignment at P-wetherbeei_contig62:94..874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig62.1.1 ID=mRNA_P-wetherbeei_contig62.1.1|Name=mRNA_P-wetherbeei_contig62.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=781bp|location=Sequence derived from alignment at P-wetherbeei_contig62:94..874- (Phaeothamnion wetherbeei SAG_119_79)
GAGAGAGATGCGGGCGGCGCTGCCAGATTTCAACATGACGCTGATGGCGC
CGCCGAACGTCTCGGCGCGGGGAGCTCTTGATGGTATGGTGAGTGTGGGC
GAGAAAGAGTGGGCAGTTTCCTGGTTCTGTTTTCTGCCGGCGTTTTTCCC
TTGGCTCCTTTGTTGAAAGAGCTGTTTGGTGGTCTTTCAATTGCTGCAGC
TAACGTTTCCTGCCCGCGATTCTAGCAAAGGTCTCTCTATGCAACTGATG
GGAGAGCTCCAACTTTGGCTGCCTTTGGCCTCTCTACTTGTTTTCATGTT
CCGTTTATTGCGCACGCCGCTGCCTCGACAGATCGGGGCAGACGTCCTCA
TTTCTGGGACGAGCGGCTTCAGCCGGGCCGCGGCGGCACTACGCAACTCT
GGCATCGCCATCGCACCGACCGCGGAGTACGGTTGGAACGAATTGGACAC
CACCGAAACGGTTTTCGTCGTGCCGCTGAGCCAACCCATCCCGGGCGCGG
AGGACGCCATCGGATGCAAGCTTTTTGGAAGCGCCGTCACGGCAGCCGTG
CGGGCAGATGCTGTCGCACATATCCGGCGGGCATTGGCGGAGCATCCGCT
CATGCCGCAGTGCGGAACTGGCACATAATGGGAGGATTCAAGAAGATGCG
GTGGCACCAGGGCCGCTACGACGGAGTTGGAAGGGCAGCGTTGGAGAGTC
ATGCTGTGACTCTGCTCGGAGAGGCGCAAAACGATGAAAGGCAGAAACAC
GAAGTGAATGCAGAGCATTTGTCGAATAACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig62:94..874-

>mRNA_P-wetherbeei_contig62.1.1 ID=mRNA_P-wetherbeei_contig62.1.1|Name=mRNA_P-wetherbeei_contig62.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig62:94..874- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCGGCGCTGCCAGATTTCAACATGACGCTGATGGCGCCGCCGAA
CGTCTCGGCGCGGGGAGCTCTTGATGGTATGATCGGGGCAGACGTCCTCA
TTTCTGGGACGAGCGGCTTCAGCCGGGCCGCGGCGGCACTACGCAACTCT
GGCATCGCCATCGCACCGACCGCGGAGTACGGTTGGAACGAATTGGACAC
CACCGAAACGGTTTTCGTCGTGCCGCTGAGCCAACCCATCCCGGGCGCGG
AGGACGCCATCGGATGCAAGCTTTTTGGAAGCGCCGTCACGGCAGCCGTG
CGGGCAGATGCTGTCGCACATATCCGGCGGGCATTGGCGGAGCATCCGCT
CATGCCGCAGTGCGGAACTGGCACATAA
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