mRNA_P-wetherbeei_contig6190.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6190.2.1
Unique NamemRNA_P-wetherbeei_contig6190.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6190.2.1 vs. uniprot
Match: D8LMP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMP3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   94 RGDIESIRRYIKTGGDLDRRDWDQCTPLHIACAG 195
            RGD+ES+++YI TGGDL+R DWD CT LHIACAG
Sbjct:   86 RGDLESVQKYIATGGDLERMDWDNCTALHIACAG 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6190.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMP3_ECTSI1.700e-873.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6190contigP-wetherbeei_contig6190:2176..3268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMP3
PFAMsAnk_2,Ank_3,Ank_5
Model size704
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.78e-09
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size702
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.3167849-CDS-P-wetherbeei_contig6190:2175..27261683186895.3167849-CDS-P-wetherbeei_contig6190:2175..2726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6190 2176..2726 +
1683186895.3275208-CDS-P-wetherbeei_contig6190:3117..32681683186895.3275208-CDS-P-wetherbeei_contig6190:3117..3268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6190 3118..3268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6190.2.1prot_P-wetherbeei_contig6190.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6190 2176..3268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6190.2.1

>prot_P-wetherbeei_contig6190.2.1 ID=prot_P-wetherbeei_contig6190.2.1|Name=mRNA_P-wetherbeei_contig6190.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
SLGVLGQKSFCTMVESAGTHGGGVDVHGAVERGDIESIRRYIKTGGDLDR
RDWDQCTPLHIACAGGFVEIAQLLMEKGSDLNAKSRIEHTPLHLAARYGH
LSIALALLVAGAVIDPRDNEANTPLHKSASNGHAQLCRELVKRGAAVDAS
NNGGYTPLHWAAYRGHAEAVDALASVGADIDSRSESGMTALHVAAFYGHS
GAAAELLRAGVDSAAQDLDGAAAGDAFHDEVSPS
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mRNA from alignment at P-wetherbeei_contig6190:2176..3268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6190.2.1 ID=mRNA_P-wetherbeei_contig6190.2.1|Name=mRNA_P-wetherbeei_contig6190.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1093bp|location=Sequence derived from alignment at P-wetherbeei_contig6190:2176..3268+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCTTGGTGTGCTAGGACAGAAGAGCTTTTGCACAATGGTGGAGTCTGC
GGGCACGCATGGCGGCGGCGTCGACGTGCACGGCGCGGTCGAGCGAGGAG
ACATTGAATCGATCCGCCGCTACATCAAAACAGGAGGAGACCTTGATCGA
CGAGATTGGGATCAGTGCACACCCCTACACATCGCATGCGCCGGCGGCTT
TGTAGAGATTGCGCAGCTGCTGATGGAGAAAGGCTCGGACCTGAACGCGA
AGAGCCGTATCGAGCACACCCCGCTACACCTCGCCGCGCGATACGGCCAT
CTAAGCATTGCGCTCGCGCTACTCGTCGCCGGCGCCGTGATCGATCCACG
CGACAACGAGGCCAACACACCTTTACACAAGTCAGCGAGCAACGGCCACG
CGCAGCTGTGCCGGGAACTCGTGAAGCGGGGCGCCGCTGTCGACGCCTCT
AACAACGGCGGCTACACCCCGTTGCATTGGGCGGCGTATCGGGGCCACGC
GGAAGCGGTGGATGCTCTGGCGTCCGTCGGAGCCGACATCGACTCGCGAA
GGTGAGCTATTCTTGTTTTTCTACTCAGTTTCGAACTTTTGAGAAAGGTC
CTACCTTTTTGAAAGCAGGACCACACTTGCCACGTTGTCGGTGCCCCCAC
AAATAGACCGGAAGCTTTTACTTTGATGCGGAGGCACGCGGCCACCGCCA
TCTTCGCGGCGGCTGTTCAAGTGGCATATGGCAGCAGCACGATGCGACCA
GTGCTGAAATCGCAACTGCAATGTGATCCATTCAACTGCCACGAACACGC
TCCGGTCCGCTTGACCTTTCCGCGTATTTTCTGTCCTTTTGCTCGGCCGA
CACAGTGAATACCTTGCGTTCGAATGAATGATTCATCCTTCCTACGACGC
GATGCGCTGTCCCCCGGTCGACTGCCATCTTCCTGCTTGCAGCGAGAGCG
GCATGACGGCGCTGCACGTCGCGGCGTTCTATGGGCACAGCGGCGCCGCA
GCAGAGCTGCTGCGGGCGGGCGTGGACTCGGCGGCGCAGGATTTAGACGG
TGCCGCCGCCGGAGACGCGTTTCATGACGAGGTTAGCCCAAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6190:2176..3268+

>mRNA_P-wetherbeei_contig6190.2.1 ID=mRNA_P-wetherbeei_contig6190.2.1|Name=mRNA_P-wetherbeei_contig6190.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig6190:2176..3268+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCTTGGTGTGCTAGGACAGAAGAGCTTTTGCACAATGGTGGAGTCTGC
GGGCACGCATGGCGGCGGCGTCGACGTGCACGGCGCGGTCGAGCGAGGAG
ACATTGAATCGATCCGCCGCTACATCAAAACAGGAGGAGACCTTGATCGA
CGAGATTGGGATCAGTGCACACCCCTACACATCGCATGCGCCGGCGGCTT
TGTAGAGATTGCGCAGCTGCTGATGGAGAAAGGCTCGGACCTGAACGCGA
AGAGCCGTATCGAGCACACCCCGCTACACCTCGCCGCGCGATACGGCCAT
CTAAGCATTGCGCTCGCGCTACTCGTCGCCGGCGCCGTGATCGATCCACG
CGACAACGAGGCCAACACACCTTTACACAAGTCAGCGAGCAACGGCCACG
CGCAGCTGTGCCGGGAACTCGTGAAGCGGGGCGCCGCTGTCGACGCCTCT
AACAACGGCGGCTACACCCCGTTGCATTGGGCGGCGTATCGGGGCCACGC
GGAAGCGGTGGATGCTCTGGCGTCCGTCGGAGCCGACATCGACTCGCGAA
GCGAGAGCGGCATGACGGCGCTGCACGTCGCGGCGTTCTATGGGCACAGC
GGCGCCGCAGCAGAGCTGCTGCGGGCGGGCGTGGACTCGGCGGCGCAGGA
TTTAGACGGTGCCGCCGCCGGAGACGCGTTTCATGACGAGGTTAGCCCAA
GT
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