mRNA_P-wetherbeei_contig6186.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6186.2.1
Unique NamemRNA_P-wetherbeei_contig6186.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6186.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6186contigP-wetherbeei_contig6186:2456..2957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size502
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.8626182-UTR-P-wetherbeei_contig6186:2455..24861683186894.8626182-UTR-P-wetherbeei_contig6186:2455..2486Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6186 2456..2486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.8836489-CDS-P-wetherbeei_contig6186:2486..29571683186894.8836489-CDS-P-wetherbeei_contig6186:2486..2957Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6186 2487..2957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6186.2.1prot_P-wetherbeei_contig6186.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6186 2487..2957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6186.2.1

>prot_P-wetherbeei_contig6186.2.1 ID=prot_P-wetherbeei_contig6186.2.1|Name=mRNA_P-wetherbeei_contig6186.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
MKFNLPFRWRFSRPDFPRRSRRQGAARDRGTLRGAGGAERIFKKRMTELL
SGWQDAIELLSLAEKWNLADLVAADEQFDPPLFPWSYLISKVNRSRSLMP
YSAPTTASCLSSPMWRCFPGRSVKKAHLLADEGGGDDGGSDALLACSVAN
HGGTSL*
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mRNA from alignment at P-wetherbeei_contig6186:2456..2957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6186.2.1 ID=mRNA_P-wetherbeei_contig6186.2.1|Name=mRNA_P-wetherbeei_contig6186.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=502bp|location=Sequence derived from alignment at P-wetherbeei_contig6186:2456..2957+ (Phaeothamnion wetherbeei SAG_119_79)
AGGAGGACCACTCTTTCTCCTTGCGCTACACATGAAATTTAACTTACCTT
TTAGATGGCGTTTTTCACGACCTGACTTTCCTCGTCGGTCGCGAAGGCAA
GGCGCAGCAAGAGATCGAGGCACACTGCGCGGTGCTGGCGGTGCAGAGCG
CATATTTAAAAAACGCATGACTGAGTTGCTCTCGGGGTGGCAGGACGCCA
TCGAACTCCTTTCCCTCGCAGAGAAATGGAACCTCGCAGACCTCGTAGCA
GCGGATGAGCAATTCGACCCACCGCTCTTCCCCTGGAGCTACCTGATATC
CAAAGTCAATCGATCGCGGTCATTGATGCCATACTCAGCTCCGACGACGG
CCTCGTGCCTTTCAAGCCCAATGTGGCGTTGCTTTCCCGGCCGGTCGGTG
AAGAAAGCACATCTGCTCGCCGACGAAGGCGGCGGCGACGACGGCGGCAG
TGATGCGCTCCTGGCGTGCTCCGTGGCAAACCATGGTGGGACTTCTTTGT
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6186:2456..2957+

>mRNA_P-wetherbeei_contig6186.2.1 ID=mRNA_P-wetherbeei_contig6186.2.1|Name=mRNA_P-wetherbeei_contig6186.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig6186:2456..2957+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATTTAACTTACCTTTTAGATGGCGTTTTTCACGACCTGACTTTCC
TCGTCGGTCGCGAAGGCAAGGCGCAGCAAGAGATCGAGGCACACTGCGCG
GTGCTGGCGGTGCAGAGCGCATATTTAAAAAACGCATGACTGAGTTGCTC
TCGGGGTGGCAGGACGCCATCGAACTCCTTTCCCTCGCAGAGAAATGGAA
CCTCGCAGACCTCGTAGCAGCGGATGAGCAATTCGACCCACCGCTCTTCC
CCTGGAGCTACCTGATATCCAAAGTCAATCGATCGCGGTCATTGATGCCA
TACTCAGCTCCGACGACGGCCTCGTGCCTTTCAAGCCCAATGTGGCGTTG
CTTTCCCGGCCGGTCGGTGAAGAAAGCACATCTGCTCGCCGACGAAGGCG
GCGGCGACGACGGCGGCAGTGATGCGCTCCTGGCGTGCTCCGTGGCAAAC
CATGGTGGGACTTCTTTGTAG
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