mRNA_P-wetherbeei_contig6183.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6183.4.1
Unique NamemRNA_P-wetherbeei_contig6183.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F4AS25_9PROT (zf-CHCC domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4AS25_9PROT)

HSP 1 Score: 111 bits (278), Expect = 4.460e-31
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1
Query:   13 REIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            R +EVTE+DLPLHCP P+APLW+RHPRVFLDVAKAG ALCPYC T YV+KGVAPKGH
Sbjct:   10 RRVEVTEKDLPLHCPTPAAPLWARHPRVFLDVAKAGEALCPYCSTTYVYKGVAPKGH 66          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F4FEJ3_9PROT (zf-CHCC domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FEJ3_9PROT)

HSP 1 Score: 108 bits (270), Expect = 7.420e-30
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 1
Query:   10 AREIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            +R +EVTE+DLPLHCP P+APLW+ HPRVFLDVA+ G ALCPYCGT+YV+KG APKGH
Sbjct:    9 SRRVEVTEKDLPLHCPTPAAPLWAHHPRVFLDVARQGEALCPYCGTRYVYKGAAPKGH 66          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F2UX08_9BACT (zf-CHCC domain-containing protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b TaxID=1797193 RepID=A0A1F2UX08_9BACT)

HSP 1 Score: 107 bits (268), Expect = 1.420e-29
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 AREIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            AR +EVTE+DLPLHCP P APLW+RHPRVFLDV K G  LCPYCGT+YV+KG APKGH
Sbjct:    7 ARLVEVTEKDLPLHCPTPGAPLWARHPRVFLDVTKRGEMLCPYCGTRYVYKGTAPKGH 64          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A522VV03_9PROT (Zinc-finger domain-containing protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VV03_9PROT)

HSP 1 Score: 107 bits (267), Expect = 2.130e-29
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   16 EIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            ++EVT++DLPLHCP P+APLW+RHPRVFLDVA+ G ALCPYCGT YVFKG APKGH
Sbjct:   11 QVEVTDKDLPLHCPTPAAPLWARHPRVFLDVARQGSALCPYCGTLYVFKGAAPKGH 66          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A177QSC5_9PROT (zf-CHCC domain-containing protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QSC5_9PROT)

HSP 1 Score: 107 bits (266), Expect = 2.720e-29
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 MADAR-EIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            MAD R E+EV+E+DLP HCPMP +PLW+RHPRVFLDVAK GH  CPYCGT Y++KG A KGH
Sbjct:    1 MADTRKEVEVSEKDLPFHCPMPGSPLWARHPRVFLDVAKEGHTRCPYCGTMYIYKGAAVKGH 62          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F4F460_9PROT (zf-CHCC domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F460_9PROT)

HSP 1 Score: 106 bits (265), Expect = 4.300e-29
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1
Query:   19 IEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            +EVTE+DLPLHCP P APLW+RHPRVFLDVA AG  LCPYCGT+YV+KG APKGH
Sbjct:   12 VEVTEKDLPLHCPPPGAPLWARHPRVFLDVASAGEMLCPYCGTKYVYKGAAPKGH 66          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F3YCZ1_9PROT (zf-CHCC domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YCZ1_9PROT)

HSP 1 Score: 106 bits (265), Expect = 4.420e-29
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   16 EIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            ++E+TE+DLPLHCP+P APLW+RHPRVFLDV K G ALCPYCGT+Y++KG APKGH
Sbjct:   12 QVELTEKDLPLHCPLPGAPLWARHPRVFLDVVKHGEALCPYCGTKYLYKGTAPKGH 67          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F4CG75_9PROT (zf-CHCC domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4CG75_9PROT)

HSP 1 Score: 105 bits (263), Expect = 8.690e-29
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   13 REIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            R +EVT+QDLPLHCP PS P+W+ HPRVFLDVAKAG  LCPYCGT+YV+KG  PKGH
Sbjct:   10 RSVEVTQQDLPLHCPTPSTPVWNMHPRVFLDVAKAGELLCPYCGTRYVYKGAPPKGH 66          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A1F4EWN2_9PROT (zf-CHCC domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EWN2_9PROT)

HSP 1 Score: 104 bits (260), Expect = 2.240e-28
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 MADA-REIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            MAD+ +E+EVTE++LPLHCPMP APLW+RHPRVFLDVAK G + CPYCGT+YV+KG   KGH
Sbjct:    1 MADSSKEVEVTEKNLPLHCPMPDAPLWARHPRVFLDVAKEGESRCPYCGTRYVYKGAPVKGH 62          
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Match: A0A537AQZ3_9PROT (Zinc-finger domain-containing protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AQZ3_9PROT)

HSP 1 Score: 104 bits (259), Expect = 3.450e-28
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   10 AREIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQYVFKGVAPKGH 183
            +R +EVTE DLPLHCP P  P+WS HPRVFLDVAKAG ALCPYCGT+YV+KG  PKGH
Sbjct:    8 SRVVEVTEADLPLHCPTPKTPVWSLHPRVFLDVAKAGQALCPYCGTRYVYKGGKPKGH 65          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6183.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4AS25_9PROT4.460e-3182.46zf-CHCC domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4FEJ3_9PROT7.420e-3075.86zf-CHCC domain-containing protein n=2 Tax=unclassi... [more]
A0A1F2UX08_9BACT1.420e-2977.59zf-CHCC domain-containing protein n=1 Tax=Acidobac... [more]
A0A522VV03_9PROT2.130e-2978.57Zinc-finger domain-containing protein n=3 Tax=Beta... [more]
A0A177QSC5_9PROT2.720e-2972.58zf-CHCC domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4F460_9PROT4.300e-2980.00zf-CHCC domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F3YCZ1_9PROT4.420e-2975.00zf-CHCC domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4CG75_9PROT8.690e-2975.44zf-CHCC domain-containing protein n=2 Tax=unclassi... [more]
A0A1F4EWN2_9PROT2.240e-2872.58zf-CHCC domain-containing protein n=2 Tax=unclassi... [more]
A0A537AQZ3_9PROT3.450e-2875.86Zinc-finger domain-containing protein n=3 Tax=Beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6183contigP-wetherbeei_contig6183:1881..2066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog640081.Dsui_3340
PFAMszf-CHCC
Model size186
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.13e-28
EggNOG OGsCOG4391@1|root,COG4391@2|Bacteria,1N7QM@1224|Proteobacteria,2VVV6@28216|Betaproteobacteria,2KX79@206389|Rhodocyclales
DescriptionZinc-finger domain
Cds size186
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.5654876-CDS-P-wetherbeei_contig6183:1880..20661683186894.5654876-CDS-P-wetherbeei_contig6183:1880..2066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6183 1881..2066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6183.4.1prot_P-wetherbeei_contig6183.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6183 1881..2066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6183.4.1

>prot_P-wetherbeei_contig6183.4.1 ID=prot_P-wetherbeei_contig6183.4.1|Name=mRNA_P-wetherbeei_contig6183.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MADAREIEVTEQDLPLHCPMPSAPLWSRHPRVFLDVAKAGHALCPYCGTQ
YVFKGVAPKGH*
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mRNA from alignment at P-wetherbeei_contig6183:1881..2066-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6183.4.1 ID=mRNA_P-wetherbeei_contig6183.4.1|Name=mRNA_P-wetherbeei_contig6183.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig6183:1881..2066- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGCGCGCGAAATCGAAGTCACGGAGCAGGACCTGCCGCTGCA CTGCCCGATGCCGTCGGCGCCGCTGTGGAGCCGGCACCCGCGCGTGTTCC TTGACGTGGCGAAGGCCGGCCATGCGCTCTGCCCGTATTGCGGCACGCAG TACGTCTTCAAGGGAGTGGCCCCGAAGGGCCATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6183:1881..2066-

>mRNA_P-wetherbeei_contig6183.4.1 ID=mRNA_P-wetherbeei_contig6183.4.1|Name=mRNA_P-wetherbeei_contig6183.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig6183:1881..2066- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGACGCGCGCGAAATCGAAGTCACGGAGCAGGACCTGCCGCTGCA
CTGCCCGATGCCGTCGGCGCCGCTGTGGAGCCGGCACCCGCGCGTGTTCC
TTGACGTGGCGAAGGCCGGCCATGCGCTCTGCCCGTATTGCGGCACGCAG
TACGTCTTCAAGGGAGTGGCCCCGAAGGGCCATTGA
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