mRNA_P-wetherbeei_contig6178.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6178.1.1
Unique NamemRNA_P-wetherbeei_contig6178.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A836CGD9_9STRA (Endoplasmic reticulum vesicle transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD9_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.210e-27
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRRERL-RVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            +RR+D+YA V EDL V TE GATVT+VFW +L LL+++E+ ++    T RE L RVDTSLG+++ I +NMTFHAI CLD+H+DAMDVAG
Sbjct:   41 LRRMDLYARVNEDLTVKTESGATVTVVFWVLLVLLVTSEVRTFLATRTSREELMRVDTSLGRKLEIGLNMTFHAINCLDLHVDAMDVAG 129
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A6H5K090_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K090_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.020e-25
Identity = 47/88 (53.41%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            +++LDVYA V EDL+V TE GA VTI FW ++ +L   E+ +Y +     ER+ VD+++GQ++ I ++MTFH+IPCLDVH+DAMDVAG
Sbjct:   44 IKQLDVYARVDEDLQVRTETGAAVTIGFWVLMVVLCVGEVQAYRKVQAPTERVVVDSTMGQKLRINIDMTFHSIPCLDVHVDAMDVAG 131
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A7S2Y179_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y179_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.470e-19
Identity = 37/88 (42.05%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            ++ LDVY+ V++D ++ T  G TV+++ W ++ +L+  E   Y +   +RE + VD +LGQ++ I +N++FHAI C +VH+DAMDVAG
Sbjct:   28 LKHLDVYSKVEDDFKIKTSQGGTVSVMVWVLVVVLVVTETLQYMKRE-QREHMVVDQTLGQKLRIDLNISFHAINCNEVHLDAMDVAG 114
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A7S2HLA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLA8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.020e-17
Identity = 36/89 (40.45%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARA-PTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            VR+LD+Y+ V+ + +V T  G  ++++ WA+  +L  +E W Y R+  T +E + VD+ LGQ++ I +N++F A+ C+++H+DAMDVAG
Sbjct:   10 VRKLDMYSKVESEFKVTTATGGYLSLIGWALTLILTLSETWGYWRSRTTTKEHMVVDSFLGQKLRIDMNISFPALSCVEMHVDAMDVAG 98
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: W7UAM5_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAM5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.230e-16
Identity = 35/88 (39.77%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            + R+DV+    ++ ++ T  GA++ +  W ++ +LL +E +        +E L VDTSLG ++ I ++MTFHA+ C DVH+DAMDVAG
Sbjct:   34 LERMDVFTKFHDEDKIQTSRGASMALFSWVLVLVLLCSEAYEAFLTSRTKEHLVVDTSLGDKLNITLDMTFHALTCADVHVDAMDVAG 121
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A7S2WEL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WEL7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-15
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTR-RERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            VRRLD +  V+ DL V TE G   T+V + I+ +L+ AE+ S+  +     E + VDTSLG++M + +N+TF A+ C D+H+D MDVAG
Sbjct:   26 VRRLDFFQKVESDLTVKTERGGKATLVGYLIIAILILAEVLSWRASNAELMEHVVVDTSLGKKMRVSLNITFPALHCNDLHVDLMDVAG 114
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BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A6U6HM67_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6HM67_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.540e-15
Identity = 38/89 (42.70%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSY-ARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            +R LD++  V+ DL V T+ G  + +  + ++ +LL AE+ SY +   + +E +RVD SLG+RM + +N+TF A+ C D+H+DAMDVAG
Sbjct:    7 MRSLDMFPKVESDLTVKTDRGGMMALAGYGVIAVLLLAEVVSYRSENSSFKEHVRVDKSLGKRMRVDLNITFPALHCDDLHVDAMDVAG 95
[Close]
BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A482ST47_9ARCH (ERGIC_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST47_9ARCH)

HSP 1 Score: 72.0 bits (175), Expect = 4.600e-14
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   70 VTIVFWAILTLLLSAELWSYARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            V+I+ W I+ LL  AE+ +Y   P  RE + VDT+LG+++ I VN+TFHA+ C DVH+D MD+AG
Sbjct:   16 VSIIGWVIIVLLSLAEVRNYL-TPRMREHMIVDTTLGEKLRIDVNITFHALTCNDVHLDVMDIAG 79
[Close]
BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A0E9NN82_SAICN (Endoplasmic reticulum-Golgi intermediate compartment protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NN82_SAICN)

HSP 1 Score: 75.5 bits (184), Expect = 5.750e-14
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    4 RRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            RRLD +A V ED R+ T  G  VT++ +A++++L+++E   + R  T    L VD + G+RM I +N+TF  IPC  + +D MDV+G
Sbjct:   33 RRLDAFAKVAEDARIRTTSGGLVTLICFALISILITSEFLDWRRI-TETTELVVDKTRGERMTIHLNLTFAHIPCSMLSLDVMDVSG 118
[Close]
BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Match: A0A662X0V8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0V8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.520e-13
Identity = 35/88 (39.77%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRRERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAG 264
            ++++DVY  +  + +V TE GATV++V   ++ LL  +EL +Y    T  E + VD+SLG+++ + ++++F AI C D H++AMDVAG
Sbjct:   32 LKKVDVYPKMHREFKVQTEFGATVSLVAGVVMALLFLSELHAYWSVNTH-EHMVVDSSLGEKLQVNMDVSFLAINCRDAHVNAMDVAG 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6178.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGD9_9STRA1.210e-2760.67Endoplasmic reticulum vesicle transporter-domain-c... [more]
A0A6H5K090_9PHAE4.020e-2553.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y179_9STRA3.470e-1942.05Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2HLA8_9STRA1.020e-1740.45Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7UAM5_9STRA5.230e-1639.77Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2WEL7_9STRA1.100e-1544.94Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6U6HM67_9STRA3.540e-1542.70Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A482ST47_9ARCH4.600e-1450.77ERGIC_N domain-containing protein n=1 Tax=archaeon... [more]
A0A0E9NN82_SAICN5.750e-1441.38Endoplasmic reticulum-Golgi intermediate compartme... [more]
A0A662X0V8_9STRA1.520e-1339.77Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6178contigP-wetherbeei_contig6178:2860..3341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FQQ1
Preferred nameERGIC3
PFAMsCOPIIcoated_ERV,ERGIC_N
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K20365,ko:K20367
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Exons2
Evalue1.3e-26
EggNOG OGsCOG0445@1|root,KOG2667@2759|Eukaryota
Descriptionvesicle-mediated transport
Cds size279
COG categoryD
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.3696241-CDS-P-wetherbeei_contig6178:2859..29491683186894.3696241-CDS-P-wetherbeei_contig6178:2859..2949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6178 2860..2949 +
1683186894.3794599-CDS-P-wetherbeei_contig6178:3152..33411683186894.3794599-CDS-P-wetherbeei_contig6178:3152..3341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6178 3153..3341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6178.1.1prot_P-wetherbeei_contig6178.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6178 2860..3341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6178.1.1

>prot_P-wetherbeei_contig6178.1.1 ID=prot_P-wetherbeei_contig6178.1.1|Name=mRNA_P-wetherbeei_contig6178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
VRRLDVYAPVQEDLRVCTEGGATVTIVFWAILTLLLSAELWSYARAPTRR
ERLRVDTSLGQRMAIFVNMTFHAIPCLDVHIDAMDVAGAWFF*
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mRNA from alignment at P-wetherbeei_contig6178:2860..3341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6178.1.1 ID=mRNA_P-wetherbeei_contig6178.1.1|Name=mRNA_P-wetherbeei_contig6178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=482bp|location=Sequence derived from alignment at P-wetherbeei_contig6178:2860..3341+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCGAAGGCTGGACGTCTACGCGCCCGTTCAAGAAGACCTTCGGGTCTG
CACGGAGGGTGGTGCTACCGTCACCATCGTATTTTGGGCGGTGCGTCTCC
CATATCTCATCACCCGTCCGTTTCTTCTTCAGCTTCACCTCACTCTCTTA
GGCCAAATACAATGAGACCTTTCACAACCGGTCGACACCTCCGTTTCCTC
CGTTTCCCTCCCTCTCATATTGCTTCCCCTTTTTTCTCGACCCTTTTCAA
TACCTTTTCTCGCGCTGTCCTCGCGTCCCTCTCATCCCCGTAGATCCTCA
CCTTGCTCCTGTCGGCCGAGCTCTGGTCTTACGCCCGCGCCCCGACGCGG
AGGGAGCGGCTGCGCGTCGACACCTCCCTCGGGCAGCGCATGGCCATCTT
CGTCAACATGACCTTCCATGCCATTCCCTGCCTCGACGTCCATATCGACG
CCATGGACGTCGCCGGTGCGTGGTTTTTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6178:2860..3341+

>mRNA_P-wetherbeei_contig6178.1.1 ID=mRNA_P-wetherbeei_contig6178.1.1|Name=mRNA_P-wetherbeei_contig6178.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig6178:2860..3341+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCGAAGGCTGGACGTCTACGCGCCCGTTCAAGAAGACCTTCGGGTCTG
CACGGAGGGTGGTGCTACCGTCACCATCGTATTTTGGGCGATCCTCACCT
TGCTCCTGTCGGCCGAGCTCTGGTCTTACGCCCGCGCCCCGACGCGGAGG
GAGCGGCTGCGCGTCGACACCTCCCTCGGGCAGCGCATGGCCATCTTCGT
CAACATGACCTTCCATGCCATTCCCTGCCTCGACGTCCATATCGACGCCA
TGGACGTCGCCGGTGCGTGGTTTTTTTGA
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