mRNA_P-wetherbeei_contig617.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig617.8.1
Unique NamemRNA_P-wetherbeei_contig617.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig617.8.1 vs. uniprot
Match: A0A482US05_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482US05_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 1.080e-9
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    1 EVWPPYCDPAYRMPDLLHIEVVVDGEIRAFAVEVVRDRCGGGGESSGGVRCVPKAYLGGYRHRSNGKLYHHA 216
            E WP Y +P Y MPD++ ++V VD E   F V +V+ + G             K YLGGYR++ NG ++HHA
Sbjct:   21 ERWPDYVNPHYVMPDMIEVKVTVDSETFLFPVHIVKAQGG-------------KTYLGGYRNKINGAVFHHA 79
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BLAST of mRNA_P-wetherbeei_contig617.8.1 vs. uniprot
Match: A0A7S4DG95_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG95_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 3.700e-9
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:    1 EVWPPYCDPAYRMPDLLHIEVVVD--GEIRAFAVEVVRDRCGGGGESSGGVRCVPKAYLGGYRHRSNGKLYHHA 216
            E WP YC+PAY+MP+L+ ++VV++  GE R   V + R                 K YLGGYRH+  G ++HHA
Sbjct:   29 EGWPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAE-------------YRKKYLGGYRHKKTGAVFHHA 89
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BLAST of mRNA_P-wetherbeei_contig617.8.1 vs. uniprot
Match: A0A7S2UXR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXR8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.040e-8
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    7 WPPYCDPAYRMPDLLHIEVVVD--GEIRAFAVEVVRDRCGGGGESSGGVRCVPKAYLGGYRHRSNGKLYHHA 216
            WPPYC+P Y+MP ++ ++V ++  GE R   V V + +               K YLGGYRHR   K+YHHA
Sbjct:   58 WPPYCNPTYKMPSVIEVQVHIEETGETRYLPVFVNKFQ-------------GRKRYLGGYRHRETQKVYHHA 116
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BLAST of mRNA_P-wetherbeei_contig617.8.1 vs. uniprot
Match: A0A7S3H598_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H598_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.300e-8
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    4 VWPPYCDPAYRMPDLLHIEVVVDGEIRAFAVEVVRDRCGGGGESSGGVRCVPKAYLGGYRHRSNGKLYHHA 216
            +WP YC+P Y MPD + ++V V  +   F +++ +                PK YLGGYR++ NG +YHHA
Sbjct:   55 LWPSYCNPTYVMPDKIDVKVTVGADTYYFPLDIEK-------------ASAPKKYLGGYRNKLNGYVYHHA 112
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BLAST of mRNA_P-wetherbeei_contig617.8.1 vs. uniprot
Match: A0A8J2SZI2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZI2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.840e-5
Identity = 26/73 (35.62%), Postives = 36/73 (49.32%), Query Frame = 1 
Query:    1 EVWPPYCDPAYRMPDLLHIEVVVDGEIRA-FAVEVVRDRCGGGGESSGGVRCVPKAYLGGYRHRSNGKLYHHA 216
            E WPPY DP+Y+MP  + + V    E      V + ++                K YLGGYRH+  G++YHHA
Sbjct:   18 EEWPPYADPSYKMPASIEVTVQKRNEDDVTLTVNIEKEN-------------TRKPYLGGYRHKKTGRVYHHA 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig617.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A482US05_9ARCH1.080e-940.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4DG95_HETAK3.700e-940.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UXR8_9STRA2.040e-840.28Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3H598_9STRA3.300e-836.62Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8J2SZI2_9STRA1.840e-535.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig617contigP-wetherbeei_contig617:9001..9216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCF8
Preferred nameIQUB
PFAMsubiquitin
Model size216
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
Exons1
Evalue0.00013
EggNOG OGs28JBT@1|root,2QRQT@2759|Eukaryota
Ec32 ortholog descriptionIQ calmodulin-binding motif family protein
Ec32 orthologEc-00_007120.1
Descriptionsmoothened signaling pathway
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.9939039-CDS-P-wetherbeei_contig617:9000..92161683186893.9939039-CDS-P-wetherbeei_contig617:9000..9216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig617 9001..9216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig617.8.1prot_P-wetherbeei_contig617.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig617 9001..9216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig617.8.1

>prot_P-wetherbeei_contig617.8.1 ID=prot_P-wetherbeei_contig617.8.1|Name=mRNA_P-wetherbeei_contig617.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
EVWPPYCDPAYRMPDLLHIEVVVDGEIRAFAVEVVRDRCGGGGESSGGVR
CVPKAYLGGYRHRSNGKLYHHA
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mRNA from alignment at P-wetherbeei_contig617:9001..9216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig617.8.1 ID=mRNA_P-wetherbeei_contig617.8.1|Name=mRNA_P-wetherbeei_contig617.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig617:9001..9216+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTCTGGCCGCCGTATTGCGACCCAGCGTACCGCATGCCGGATCTGCT
TCACATCGAGGTGGTGGTGGACGGTGAGATCCGCGCCTTCGCGGTGGAGG
TCGTGCGAGACCGCTGCGGCGGTGGCGGAGAGAGCAGTGGCGGCGTACGA
TGCGTACCCAAAGCGTACCTTGGCGGTTACCGCCACCGCAGCAACGGCAA
ATTGTACCACCACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig617:9001..9216+

>mRNA_P-wetherbeei_contig617.8.1 ID=mRNA_P-wetherbeei_contig617.8.1|Name=mRNA_P-wetherbeei_contig617.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig617:9001..9216+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTCTGGCCGCCGTATTGCGACCCAGCGTACCGCATGCCGGATCTGCT
TCACATCGAGGTGGTGGTGGACGGTGAGATCCGCGCCTTCGCGGTGGAGG
TCGTGCGAGACCGCTGCGGCGGTGGCGGAGAGAGCAGTGGCGGCGTACGA
TGCGTACCCAAAGCGTACCTTGGCGGTTACCGCCACCGCAGCAACGGCAA
ATTGTACCACCACGCG
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