mRNA_P-wetherbeei_contig6163.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6163.2.1
Unique NamemRNA_P-wetherbeei_contig6163.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6163.2.1 vs. uniprot
Match: D8LT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT04_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.680e-11
Identity = 115/358 (32.12%), Postives = 158/358 (44.13%), Query Frame = 2 
Query:  185 NTHAKPAGDFGLLSPKQPQDGWPWKWKLAGASILGVAVPWLGCYAIRHDRETREFVERFAPSF-----------VDWLRRRE-GGSFQGEDAEERAFRLAMREEQKRPSQVTLMLSTGDALNVRVPSSDAPLAWLATAAAEKLYGAPESSLSSAPVIILDFYFQD--DDGVATEQRGISKEDADEERDGFAAVIDYDGGEETSSIGNGLRPERGRETRRGVPPDVAACNSMSWWAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------EKNAAIVAELQRRIGALEAEKRTGTRTIDDIDEDIAPL---QSELRKRT--RRRFLGLF 1147
            +T A+PA      SP   + GWP K+K+AG +ILG  +P++  YA+ +D  +R  V + +P             V W R+R+ GG F  ED +   +   + +    P  V++ + TG     R+   DA   + +              L      + DF   D  D G    Q G      D    G ++   Y+   E SS  +             V  DVAACN  SWW +A                    XXXXXXXXXXXXXXXXXXXXXXXX                  E+  A++  L   + ALE +K TG R+IDD++E +  L   Q ELR++   RRRFLGLF
Sbjct:   36 STTAEPAKPS---SPAAEEPGWPLKYKVAGGAILGTIIPYIFSYAMANDPGSRRLVSKLSPGIATTLPGGGRLGVQWFRQRQKGGHFFDEDPKRLEYLAHVPDWINEP--VSMEIRTGSGETRRLDGLDAQTPFSSV-----------GRLVQGGGWLTDFDVLDEGDTGDGEAQSGQIPATWDISSSGASSASSYE--HEGSSPYSATSANTSSGVAAAVRRDVAACNIRSWWDIAALEQEQARQPAPLATVAGSAXXXXXXXXXXXXXXXXXXXXXXXXVGTVGAARGSSAKKMSNAEQARAMIQHLDEMVEALERDKLTGVRSIDDVEEAVRELRRQQKELRRKHPGRRRFLGLF 375
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BLAST of mRNA_P-wetherbeei_contig6163.2.1 vs. uniprot
Match: A0A836C9C2_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.760e-8
Identity = 89/282 (31.56%), Postives = 114/282 (40.43%), Query Frame = 2 
Query:  314 YAIRHDRETREFVERFAPS---FVDWLRRREGGSFQGEDAEERAFRLAMREEQKRPSQVTLMLSTGDALNVRVPSSDAPLAWLATAAAEKLYGAPESSLSSAPVIILDFYFQDDDGVATEQRGI---------SKEDADEERDGFAAVIDYDGGEETSSIGNGLRPERGRETRRGVPPDVAACNSMSWWAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKNAAIVAELQRRIGALEAEKRTGTRTIDDIDEDIAPLQSELRKRT 1123
            YA+RHD ETR+FVE   P     V  LR+REGG F+ E    RA   A+R     P  VTL L +G+ + +       P++ L           P+   SS    + DF F D    A +             ++ DA    D     +D+                        +  DV  CN+ S WA  XXXXXXXXXX                                  E  AAI AEL  RI ALEA KRT  R+IDDI++DI  L++EL   T
Sbjct:    4 YALRHDWETRQFVESRVPGGRRLVAHLRQREGGHFEDESPVRRAHDAALRALYSIPVDVTLTLPSGETVTLPQVDPSVPVSAL-----------PQRVRSS----LSDFAFADVPDAAADXXXXXXXXXXXXXARGDAPATSD----AVDF------------------------IDDDVRRCNASSIWAAXXXXXXXXXXXAVPAAPRKGELSA---------------------EDAAAIAAELHARIAALEASKRTSARSIDDINDDIEHLRAELAAAT 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6163.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT04_ECTSI1.680e-1132.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C9C2_9STRA1.760e-831.56ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6163contigP-wetherbeei_contig6163:1638..3225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1153
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004340.1
Cds size1125
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.4015071-UTR-P-wetherbeei_contig6163:1637..16621683186893.4015071-UTR-P-wetherbeei_contig6163:1637..1662Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6163 1638..1662 +
1683186893.453364-UTR-P-wetherbeei_contig6163:3222..32251683186893.453364-UTR-P-wetherbeei_contig6163:3222..3225Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6163 3223..3225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.4128728-CDS-P-wetherbeei_contig6163:1662..25621683186893.4128728-CDS-P-wetherbeei_contig6163:1662..2562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6163 1663..2562 +
1683186893.4231293-CDS-P-wetherbeei_contig6163:2805..29461683186893.4231293-CDS-P-wetherbeei_contig6163:2805..2946Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6163 2806..2946 +
1683186893.4411461-CDS-P-wetherbeei_contig6163:3138..32221683186893.4411461-CDS-P-wetherbeei_contig6163:3138..3222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6163 3139..3222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6163.2.1prot_P-wetherbeei_contig6163.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6163 1663..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6163.2.1

>prot_P-wetherbeei_contig6163.2.1 ID=prot_P-wetherbeei_contig6163.2.1|Name=mRNA_P-wetherbeei_contig6163.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=375bp
MALQLQWAAYCRVLFRAYETSSSVRFRTSAYRRRRPRVFFFSSERSLSAA
AASNTHAKPAGDFGLLSPKQPQDGWPWKWKLAGASILGVAVPWLGCYAIR
HDRETREFVERFAPSFVDWLRRREGGSFQGEDAEERAFRLAMREEQKRPS
QVTLMLSTGDALNVRVPSSDAPLAWLATAAAEKLYGAPESSLSSAPVIIL
DFYFQDDDGVATEQRGISKEDADEERDGFAAVIDYDGGEETSSIGNGLRP
ERGRETRRGVPPDVAACNSMSWWAMAAQSQEQRREKLLCHRQQEEQKHQK
PALAGAAAGAATKRVQQREQEKNAAIVAELQRRIGALEAEKRTGTRTIDD
IDEDIAPLQSELRKRTRRRFLGLF*
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mRNA from alignment at P-wetherbeei_contig6163:1638..3225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6163.2.1 ID=mRNA_P-wetherbeei_contig6163.2.1|Name=mRNA_P-wetherbeei_contig6163.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1588bp|location=Sequence derived from alignment at P-wetherbeei_contig6163:1638..3225+ (Phaeothamnion wetherbeei SAG_119_79)
CTCACGCATTCCGAGGCAAAAGAGGATGGCGCTGCAGTTACAGTGGGCCG
CATATTGTCGAGTTCTCTTCCGAGCGTACGAGACCAGCAGTAGCGTACGA
TTTCGGACCAGCGCCTACAGACGCCGACGACCTCGAGTATTTTTCTTCTC
ATCTGAAAGGTCTCTTAGCGCCGCGGCTGCTTCCAATACGCATGCAAAAC
CTGCCGGAGATTTCGGATTGCTCTCGCCTAAGCAGCCGCAGGATGGGTGG
CCATGGAAGTGGAAGCTGGCTGGCGCTTCTATCCTGGGAGTCGCTGTGCC
CTGGCTCGGTTGCTACGCCATTCGCCACGACCGCGAGACGCGAGAATTTG
TCGAGCGATTCGCGCCTTCGTTCGTGGACTGGCTGCGGCGTCGGGAGGGC
GGCAGCTTCCAGGGCGAGGACGCCGAGGAACGAGCCTTCAGGCTCGCGAT
GCGCGAAGAGCAAAAGCGCCCGTCACAGGTGACGCTTATGCTGTCGACGG
GCGACGCGCTGAATGTGCGCGTGCCGAGTTCTGATGCGCCGCTCGCGTGG
CTCGCGACCGCCGCTGCGGAAAAGCTTTACGGAGCTCCGGAGTCATCATT
GTCGTCTGCGCCGGTGATCATCCTCGACTTTTACTTCCAGGACGACGACG
GCGTCGCCACCGAGCAGCGAGGAATTTCGAAGGAGGATGCGGACGAAGAG
CGCGACGGTTTCGCGGCTGTCATCGATTACGATGGTGGCGAGGAAACGAG
CAGCATTGGCAACGGCTTGCGACCGGAGCGAGGACGGGAAACCCGGCGCG
GAGTGCCGCCGGACGTCGCGGCGTGCAACAGCATGTCGTGGTGGGCGATG
GCGGCGCAGTCACAGGAGCAGCGGAGGGAGAAGCTGCTATGCCACCGGCA
GCAGGAGGAGCAGAAACACCAAAAGGTCAGTTAATTGCTGCGAGCGGTAA
TTTTTCCGCCGTTCTTTCTTCGCTGCATCGGTATTTTCGCCTTTTCCTGG
CTCATGCAAGGGTAGAGCGTTCAAAATTGAATAAGACAGGCTGTCACCGG
AACCTGAGTTGAATTCGTTGCTGTGAGCAGGGAGCAGCGGCTGACTCTCC
TTGTGAGTCTCGCTCTCTCTGCTTCCTGTATCTCTGGCGGGCGGCCGCAA
TCCGATCGATCCTCGCAGCCGGCATTGGCGGGTGCCGCAGCCGGAGCCGC
GACGAAGCGGGTGCAGCAGCGGGAGCAGGAGAAGAACGCCGCCATCGTCG
CGGAGCTGCAGCGCCGCATCGGCGCGCTCGAGGCGGAAAAGCGCACCGGC
ACCCGGACGGTGAGCGGTATAGTTGGAGCCAGCTCGCTGAATTTGTTTTG
GTTGTGGTTCGTCCACTACGTTGCTACTTCTCGACGTTACCCGGCTTGTG
CGTCTCCTCGTGTCATCAGCCCGCGGCGTACTTAGCAACCTTCGAACCTC
AGTGTAACCTTGCCTAATCTTATGCACTTCTTGTGGATGCCCTGCTAGCA
GATCGACGACATTGACGAGGACATCGCCCCGCTGCAGAGCGAGCTGCGGA
AAAGAACCCGCCGGAGGTTTCTGGGGCTCTTCTGACCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6163:1638..3225+

>mRNA_P-wetherbeei_contig6163.2.1 ID=mRNA_P-wetherbeei_contig6163.2.1|Name=mRNA_P-wetherbeei_contig6163.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1125bp|location=Sequence derived from alignment at P-wetherbeei_contig6163:1638..3225+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTGCAGTTACAGTGGGCCGCATATTGTCGAGTTCTCTTCCGAGC
GTACGAGACCAGCAGTAGCGTACGATTTCGGACCAGCGCCTACAGACGCC
GACGACCTCGAGTATTTTTCTTCTCATCTGAAAGGTCTCTTAGCGCCGCG
GCTGCTTCCAATACGCATGCAAAACCTGCCGGAGATTTCGGATTGCTCTC
GCCTAAGCAGCCGCAGGATGGGTGGCCATGGAAGTGGAAGCTGGCTGGCG
CTTCTATCCTGGGAGTCGCTGTGCCCTGGCTCGGTTGCTACGCCATTCGC
CACGACCGCGAGACGCGAGAATTTGTCGAGCGATTCGCGCCTTCGTTCGT
GGACTGGCTGCGGCGTCGGGAGGGCGGCAGCTTCCAGGGCGAGGACGCCG
AGGAACGAGCCTTCAGGCTCGCGATGCGCGAAGAGCAAAAGCGCCCGTCA
CAGGTGACGCTTATGCTGTCGACGGGCGACGCGCTGAATGTGCGCGTGCC
GAGTTCTGATGCGCCGCTCGCGTGGCTCGCGACCGCCGCTGCGGAAAAGC
TTTACGGAGCTCCGGAGTCATCATTGTCGTCTGCGCCGGTGATCATCCTC
GACTTTTACTTCCAGGACGACGACGGCGTCGCCACCGAGCAGCGAGGAAT
TTCGAAGGAGGATGCGGACGAAGAGCGCGACGGTTTCGCGGCTGTCATCG
ATTACGATGGTGGCGAGGAAACGAGCAGCATTGGCAACGGCTTGCGACCG
GAGCGAGGACGGGAAACCCGGCGCGGAGTGCCGCCGGACGTCGCGGCGTG
CAACAGCATGTCGTGGTGGGCGATGGCGGCGCAGTCACAGGAGCAGCGGA
GGGAGAAGCTGCTATGCCACCGGCAGCAGGAGGAGCAGAAACACCAAAAG
CCGGCATTGGCGGGTGCCGCAGCCGGAGCCGCGACGAAGCGGGTGCAGCA
GCGGGAGCAGGAGAAGAACGCCGCCATCGTCGCGGAGCTGCAGCGCCGCA
TCGGCGCGCTCGAGGCGGAAAAGCGCACCGGCACCCGGACGATCGACGAC
ATTGACGAGGACATCGCCCCGCTGCAGAGCGAGCTGCGGAAAAGAACCCG
CCGGAGGTTTCTGGGGCTCTTCTGA
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