mRNA_P-wetherbeei_contig6150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6150.1.1
Unique NamemRNA_P-wetherbeei_contig6150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: L1IAD8_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IAD8_GUITC)

HSP 1 Score: 57.4 bits (137), Expect = 4.720e-8
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   46 LEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRKQQ 186
            L+EL+T+P+HEAA +LG+S T +K   RKLG+  WP+R V++S+  Q
Sbjct:  101 LQELFTLPLHEAAVKLGISATAMKSACRKLGIKKWPYRTVQSSKNAQ 147          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A7S0TMW9_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMW9_HEMAN)

HSP 1 Score: 53.1 bits (126), Expect = 3.090e-6
Identity = 24/61 (39.34%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   46 LEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRKQQAAMLGAAPSGRGGG 228
            L E + +P+++AA RLGV  T +K++ RK+G+  WP R+++A  K+ A +   +  G+GGG
Sbjct:  481 LREHFNLPLNDAAKRLGVCATAIKKVCRKIGIKQWPHRKLKAVEKRLAMLRAESAYGKGGG 541          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A6P6G8L8_ZIZJJ (uncharacterized protein LOC112491998 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6G8L8_ZIZJJ)

HSP 1 Score: 52.4 bits (124), Expect = 5.590e-6
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   28 RMTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRKQQAAML 198
            R+TL  L+E   +PI EAA R+ V  T VK+I R+ G+T WP R++++ RKQ + +L
Sbjct:  283 RLTLMDLKEYLHLPIEEAARRMNVCPTVVKKICRRNGLTRWPHRKIKSIRKQISNLL 339          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A061G426_THECC (RWP-RK domain-containing protein n=4 Tax=Byttnerioideae TaxID=214909 RepID=A0A061G426_THECC)

HSP 1 Score: 51.2 bits (121), Expect = 1.420e-5
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   25 KRMTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRKQ 183
            + +TL  +E+ + +PI EAA RL +S T +K+I RK GV  WP R++++  KQ
Sbjct:  270 RNLTLKDIEKYFHLPIEEAARRLDLSVTVLKKICRKYGVLRWPHRKIQSMEKQ 322          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: L1J569_GUITC (RWP-RK domain-containing protein n=6 Tax=Guillardia theta TaxID=55529 RepID=L1J569_GUITC)

HSP 1 Score: 49.7 bits (117), Expect = 1.490e-5
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   46 LEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRV 165
            L++ +++P+HEAA +LG+S T +K   RKLG+  WP+R V
Sbjct:   31 LQQFFSLPLHEAAYKLGISATAMKSACRKLGIKKWPYRSV 70          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A7S0TH35_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TH35_HEMAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.950e-5
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    4 NGPVGLCKRMTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRKQQAAML 198
             GPV     +TL  LE +  V + EAA +LGVS T +K+  RKLGV  WP+R+ +A   QQ  ML
Sbjct:  226 QGPV----LITLEVLESMADVSLSEAAKKLGVSSTAIKKACRKLGVQRWPYRK-QAEGAQQGDML 285          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A7S0EJR0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EJR0_9CRYP)

HSP 1 Score: 49.7 bits (117), Expect = 2.110e-5
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   46 LEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRV 165
            L++ +++P+HEAA +LG+S T +K   RKLG+  WP+R V
Sbjct:   52 LQQFFSLPLHEAAYKLGISATAMKSACRKLGIKKWPYRSV 91          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A7S0VIJ9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VIJ9_9CRYP)

HSP 1 Score: 48.1 bits (113), Expect = 4.680e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query:    4 NGPVGLCKRMTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRR 162
             GPV     +TL  LE +  V + +AA +LGVS T +K+  RKLGV  WP+R+
Sbjct:    7 RGPV----LITLEVLESMADVALSDAAKKLGVSSTAIKKACRKLGVQRWPYRK 55          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: L1JM49_GUITC (RWP-RK domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JM49_GUITC)

HSP 1 Score: 48.9 bits (115), Expect = 4.820e-5
Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   10 PVGLCKRMTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRKQQ 186
            P GL   + LP+++ L+ +   +AASRLG+S +++K   R+LGV  WP+ R   S K++
Sbjct:   21 PSGLLIEIDLPSIQSLFHLRQEDAASRLGISLSSLKSACRRLGVHRWPYSRFTCSPKEK 79          
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Match: A0A7S4M172_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4M172_GUITH)

HSP 1 Score: 48.5 bits (114), Expect = 5.070e-5
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   31 MTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVR 168
            +TLP ++ L+ +   EAA+ LG S TT+K + R+LG++ WP+ RVR
Sbjct:   54 LTLPYIQSLFVMRQKEAAALLGFSNTTMKHVCRRLGISKWPYSRVR 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
L1IAD8_GUITC4.720e-851.06RWP-RK domain-containing protein n=1 Tax=Guillardi... [more]
A0A7S0TMW9_HEMAN3.090e-639.34Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A6P6G8L8_ZIZJJ5.590e-645.61uncharacterized protein LOC112491998 n=2 Tax=Zizip... [more]
A0A061G426_THECC1.420e-543.40RWP-RK domain-containing protein n=4 Tax=Byttnerio... [more]
L1J569_GUITC1.490e-547.50RWP-RK domain-containing protein n=6 Tax=Guillardi... [more]
A0A7S0TH35_HEMAN1.950e-546.15Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
A0A7S0EJR0_9CRYP2.110e-547.50Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0VIJ9_9CRYP4.680e-545.28Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JM49_GUITC4.820e-538.98RWP-RK domain-containing protein n=1 Tax=Guillardi... [more]
A0A7S4M172_GUITH5.070e-545.65Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6150contigP-wetherbeei_contig6150:488..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3641.EOY24326
PFAMsRWP-RK
Model size246
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.59e-06
EggNOG OGs2AYC7@1|root,2S030@2759|Eukaryota,37UUJ@33090|Viridiplantae,3GHQ8@35493|Streptophyta
DescriptionRWP-RK domain
Cds size216
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.727302-UTR-P-wetherbeei_contig6150:487..5171683186892.727302-UTR-P-wetherbeei_contig6150:487..517Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6150 488..517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.740261-CDS-P-wetherbeei_contig6150:517..7331683186892.740261-CDS-P-wetherbeei_contig6150:517..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6150 518..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6150.1.1prot_P-wetherbeei_contig6150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6150 518..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6150.1.1

>prot_P-wetherbeei_contig6150.1.1 ID=prot_P-wetherbeei_contig6150.1.1|Name=mRNA_P-wetherbeei_contig6150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MTLPALEELYTVPIHEAASRLGVSCTTVKRIARKLGVTAWPFRRVRASRK
QQAAMLGAAPSGRGGGAGAGSG
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mRNA from alignment at P-wetherbeei_contig6150:488..733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6150.1.1 ID=mRNA_P-wetherbeei_contig6150.1.1|Name=mRNA_P-wetherbeei_contig6150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig6150:488..733+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAACGGCCCGGTCGGACTGTGCAAGCGGATGACGCTGCCGGCGCTGGA AGAGCTCTACACGGTGCCGATTCACGAGGCGGCCTCCCGGCTAGGCGTTT CGTGCACTACGGTGAAGCGCATCGCCCGGAAGCTGGGCGTGACAGCCTGG CCGTTCCGCCGCGTCCGGGCGAGCAGGAAGCAGCAGGCTGCGATGCTGGG GGCGGCCCCCAGTGGCCGTGGCGGCGGCGCTGGCGCCGGCAGCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6150:488..733+

>mRNA_P-wetherbeei_contig6150.1.1 ID=mRNA_P-wetherbeei_contig6150.1.1|Name=mRNA_P-wetherbeei_contig6150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig6150:488..733+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCTGCCGGCGCTGGAAGAGCTCTACACGGTGCCGATTCACGAGGC
GGCCTCCCGGCTAGGCGTTTCGTGCACTACGGTGAAGCGCATCGCCCGGA
AGCTGGGCGTGACAGCCTGGCCGTTCCGCCGCGTCCGGGCGAGCAGGAAG
CAGCAGGCTGCGATGCTGGGGGCGGCCCCCAGTGGCCGTGGCGGCGGCGC
TGGCGCCGGCAGCGGT
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