mRNA_P-wetherbeei_contig6142.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6142.1.1
Unique NamemRNA_P-wetherbeei_contig6142.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: FFT2_SCHPO (ATP-dependent helicase fft2 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=FFT2_SCHPO)

HSP 1 Score: 70.1 bits (170), Expect = 1.850e-8
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1 
Query: 2404 VQHGALNL---ECVGDAASDDDGGLAVVTAADVTEACDSLVELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAFF 2640
            + +G LN+   E V   A+D+      VT    T A D  V+L SYQL GVNW+H+LY  +++G+LADEMGLGKT Q +AFF
Sbjct:  510 MSNGELNIVDMESVPTEAADNSDFPKFVTEQPKTLASD--VQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFF 589
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: A0A7I8VYE9_9ANNE (DgyrCDS9150 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VYE9_9ANNE)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-6
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query: 2488 DVTEACDSLVELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAF 2637
            D+ +  +  ++L  YQ+AG+NW+ +LY  ++NG+LADEMGLGKTVQTIAF
Sbjct:  385 DLPKYLNHTLKLAPYQMAGLNWLALLYKNKINGILADEMGLGKTVQTIAF 434
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: A0A1V9YP31_9STRA (ATP-dependent helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YP31_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.690e-6
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query: 2458 DGGLAVVTAADVTEACDSLVELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAF 2637
            D G+  V   D+     +L EL  YQ+ GVNW+++LY  +++ VLADEMGLGKTVQTIAF
Sbjct:  324 DAGVQFVQTRDIPGLSPTL-ELQPYQVVGVNWLYLLYQHKMSAVLADEMGLGKTVQTIAF 382
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: A0A5J5EL35_9PEZI (SNF2 family N-terminal domain-containing protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EL35_9PEZI)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-5
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 
Query: 2515 VELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAFF 2640
            VEL  YQLAG+NW+++LY  +++ +LADEMGLGKT Q I+FF
Sbjct:  582 VELKDYQLAGLNWLNLLYEKKLSCILADEMGLGKTCQVISFF 623
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: A0A0C3QJE8_9AGAM (Uncharacterized protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QJE8_9AGAM)

HSP 1 Score: 59.3 bits (142), Expect = 3.330e-5
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query: 2521 LNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAF 2637
            L  YQLAGV W+ +LY   +NG+LADEMGLGKT+QTI+F
Sbjct:  152 LRDYQLAGVQWLALLYENGLNGILADEMGLGKTLQTISF 190
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: A0A177TI12_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177TI12_9BASI)

HSP 1 Score: 59.3 bits (142), Expect = 3.750e-5
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query: 2515 VELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAFF 2640
            V L +YQLAG+NW+ +LY  + + +LADEMGLGKTVQ I+FF
Sbjct:  722 VVLKNYQLAGLNWLSLLYERKTSCILADEMGLGKTVQVISFF 763
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: A0A177VYK8_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VYK8_9BASI)

HSP 1 Score: 59.3 bits (142), Expect = 3.770e-5
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query: 2515 VELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAFF 2640
            V L +YQLAG+NW+ +LY  + + +LADEMGLGKTVQ I+FF
Sbjct:  746 VVLKNYQLAGLNWLSLLYERKTSCILADEMGLGKTVQVISFF 787
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: U4L3K7_PYROM (Similar to Uncharacterized ATP-dependent helicase fft2 acc. no. O74842 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4L3K7_PYROM)

HSP 1 Score: 58.9 bits (141), Expect = 4.730e-5
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query: 2515 VELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAFF 2640
            V L  YQLAG+NW+++LY  +++ +LADEMGLGKT Q I+FF
Sbjct:  551 VVLKDYQLAGINWLNLLYEKKLSCILADEMGLGKTCQVISFF 592
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: UPI001D8CF743 (SNF2 family N-terminal domain-containing protein n=1 Tax=Microdochium trichocladiopsis TaxID=1682393 RepID=UPI001D8CF743)

HSP 1 Score: 58.9 bits (141), Expect = 4.790e-5
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query: 2512 LVELNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAF 2637
            +V+L SYQL G+NWMH+L+    +G+LAD+MGLGKT Q I+F
Sbjct:  589 VVKLKSYQLLGLNWMHLLHQNGFSGILADDMGLGKTCQVISF 630
[Close]
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Match: UPI0003F0B235 (lymphoid-specific helicase n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B235)

HSP 1 Score: 58.5 bits (140), Expect = 5.810e-5
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query: 2521 LNSYQLAGVNWMHVLYHLEVNGVLADEMGLGKTVQTIAFF 2640
            L  YQ+AG+ W+ VL+   VNG+LADEMGLGKTVQ IA F
Sbjct:  264 LRDYQIAGMEWLKVLFENGVNGILADEMGLGKTVQCIALF 303
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
FFT2_SCHPO1.850e-848.78ATP-dependent helicase fft2 n=1 Tax=Schizosaccharo... [more]
A0A7I8VYE9_9ANNE1.300e-656.00DgyrCDS9150 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A1V9YP31_9STRA1.690e-653.33ATP-dependent helicase n=1 Tax=Achlya hypogyna Tax... [more]
A0A5J5EL35_9PEZI1.220e-561.90SNF2 family N-terminal domain-containing protein n... [more]
A0A0C3QJE8_9AGAM3.330e-566.67Uncharacterized protein n=1 Tax=Tulasnella calospo... [more]
A0A177TI12_9BASI3.750e-561.90Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A177VYK8_9BASI3.770e-561.90Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
U4L3K7_PYROM4.730e-559.52Similar to Uncharacterized ATP-dependent helicase ... [more]
UPI001D8CF7434.790e-559.52SNF2 family N-terminal domain-containing protein n... [more]
UPI0003F0B2355.810e-565.00lymphoid-specific helicase n=1 Tax=Saccoglossus ko... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6142contigP-wetherbeei_contig6142:2..3008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSU0
Preferred nameSMARCAD1
PFAMsHelicase_C,SNF2_N
Model size2640
Max annot lvl2759|Eukaryota
KEGG koko:K14439
KEGG Pathwayko04550,map04550
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000122,GO:0000166,GO:0000183,GO:0000228,GO:0000729,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005720,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010225,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0016043,GO:0016363,GO:0016458,GO:0016462,GO:0016569,GO:0016570,GO:0016575,GO:0016584,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030466,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031507,GO:0031934,GO:0031974,GO:0031981,GO:0032015,GO:0032017,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034399,GO:0034401,GO:0034641,GO:0034644,GO:0034724,GO:0034728,GO:0035601,GO:0035639,GO:0035861,GO:0036094,GO:0036211,GO:0040029,GO:0042623,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046578,GO:0046579,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051056,GO:0051057,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051304,GO:0051716,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070869,GO:0070870,GO:0070932,GO:0070933,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0097549,GO:0098687,GO:0098732,GO:0104004,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue9.75e-12
EggNOG OGsKOG0389@1|root,KOG0389@2759|Eukaryota
EC3.6.4.12
Descriptionhelicase activity
Cds size2040
COG categoryL
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.8591807-UTR-P-wetherbeei_contig6142:1..6011683186891.8591807-UTR-P-wetherbeei_contig6142:1..601Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6142 2..601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.8714218-CDS-P-wetherbeei_contig6142:601..25361683186891.8714218-CDS-P-wetherbeei_contig6142:601..2536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6142 602..2536 +
1683186891.8812401-CDS-P-wetherbeei_contig6142:2903..30081683186891.8812401-CDS-P-wetherbeei_contig6142:2903..3008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6142 2904..3008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6142.1.1prot_P-wetherbeei_contig6142.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6142 602..3008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6142.1.1

>prot_P-wetherbeei_contig6142.1.1 ID=prot_P-wetherbeei_contig6142.1.1|Name=mRNA_P-wetherbeei_contig6142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=680bp
MVLPKVAAPPASGWLEKRQPLAMTEMERRCNIEVAKQQKKAFRAGMGGQA
PSSKQPGGKKGGGGGGGRKVRGGGGASKRKRKQEWESDDGEEDGDYYGES
SEEDEDNNDNDFGSNGGGSRAKRTKVTGSEKTVRNGKGRGVKGKMGKEGA
AASGASKKRKAQRRAASGSGESDEDSFDESAEESDHSIDLLNDDDEDSNG
GGSGGGRDDTGAGAGGREGGGGTSGSGHSGAAGQNGSEKERGWLVSAGSA
ASAAAASAAATASPSSNSPLTPVGRGLIDGAVAAGTSLAFTADSEIAWAF
GGSLDVPIGPPLKRTAATAPLNQFALTMRRPVPVPALAPAPAPVVAADAV
ASAPPRKRRQVIEDSDDDGDESGTFAAALRNAAAAARAARPGESESIDLT
NEGAAELLDLARGADALPASKSDGVRDAKSESSSWPENGKGGRKAIAVES
ESDDEEEADSEGSDNDDKGGRRYGGGSSDGEEDALEAQAREVLDNCTRLS
ERLMACMARWAAPTPPPAALPPLSASPGAVSKGGCGGGGDGIGGAGDDGS
TGSCAAGNGETGGGDAEQATLAAAAAGSIAGGDGGGAAAAPVAAAAGAAA
VVQHGALNLECVGDAASDDDGGLAVVTAADVTEACDSLVELNSYQLAGVN
WMHVLYHLEVNGVLADEMGLGKTVQTIAFF
back to top

mRNA from alignment at P-wetherbeei_contig6142:2..3008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6142.1.1 ID=mRNA_P-wetherbeei_contig6142.1.1|Name=mRNA_P-wetherbeei_contig6142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3007bp|location=Sequence derived from alignment at P-wetherbeei_contig6142:2..3008+ (Phaeothamnion wetherbeei SAG_119_79)
GCATACGTTGTACAAGTGTTTGTTTGATAGCTGTCTGTTAGCCTCTACGT
TCTTCACAGCGATCTTGTTCCTGGTCCAACCTTTTCCCTTTTCTTCGTCT
CCCGCTGCTTTCGCTCATGATCCGACCTTCCTCCCTCAGGCGCTGCTGCG
GCTCCCAACTTCTCGCAGTTTGCCTACAACCCGGCTGGCGCGGCAGTCAG
TGGTAGCAACGGCAGCGGCGGCGGCAGTAGCAGCGTCAACGGCGTAGGGT
TAGGCAACTCATCGGACGGAAGAGGAAATGCCAGAAACGGGAAAGAAGGT
ATCGGCACGCAATGCACCAGGGATGTAATTGACGACGGTAGCCCCGCGCC
GACGAAGGACCCGCCCCCGCGCTACGAGGTCAAACTCGTTCGCGAGTTCC
ATGGCGGCGAGACCTCATCTTCCGATGACGACCATCGCTCCGTGGCGCCG
CAAAAGGCGGCGAAGACAGCGTTGACGGCGGTGGCAGCGGCTGCGAAGAA
TACCGGCGCAGCGGGGACGGCAAAGCCGGGAGCGACAAGGACGAGAGCGG
CGGCGGCGGCGGCGGCGAGGTCGCCGTTCTCGCCAGGGCGGCCAAAGCCG
ATGGTGCTACCAAAAGTGGCCGCCCCGCCGGCCAGCGGGTGGCTCGAGAA
GCGGCAGCCGCTGGCTATGACGGAGATGGAGCGGCGTTGCAACATCGAAG
TCGCCAAACAGCAGAAAAAGGCCTTCAGGGCCGGCATGGGTGGGCAGGCC
CCTTCCTCCAAGCAGCCCGGAGGGAAGAAGGGTGGTGGCGGCGGCGGCGG
CAGGAAGGTCCGCGGCGGCGGCGGTGCATCGAAAAGAAAGCGGAAGCAAG
AGTGGGAGAGCGACGACGGGGAGGAAGATGGCGACTATTATGGGGAAAGC
TCTGAGGAGGACGAGGACAACAACGACAATGACTTCGGAAGCAACGGCGG
CGGGAGCCGGGCGAAGCGCACCAAGGTCACTGGGAGCGAGAAGACTGTCC
GAAACGGGAAGGGCCGGGGTGTCAAAGGGAAGATGGGCAAGGAGGGCGCT
GCGGCGAGTGGAGCGTCAAAGAAGAGGAAGGCGCAGCGGCGGGCGGCGAG
CGGCAGCGGGGAGAGCGATGAGGACAGTTTTGACGAGAGCGCGGAGGAGA
GCGACCATTCCATCGATCTCTTGAATGATGACGACGAGGACAGCAATGGT
GGCGGCAGTGGTGGCGGCCGCGATGACACCGGCGCCGGCGCCGGTGGGCG
GGAGGGCGGTGGCGGCACAAGCGGCAGTGGCCACAGCGGCGCAGCGGGCC
AAAACGGCAGCGAAAAGGAGCGCGGGTGGCTCGTTAGTGCCGGGTCTGCA
GCGTCAGCGGCGGCGGCATCCGCAGCGGCAACAGCCAGTCCGAGCTCCAA
CAGTCCGTTAACCCCTGTAGGTCGCGGCCTCATTGACGGGGCCGTCGCTG
CTGGTACCTCGCTGGCATTCACGGCGGATTCCGAGATTGCATGGGCCTTT
GGAGGATCGTTGGATGTGCCGATCGGCCCGCCGTTGAAGAGGACCGCCGC
CACGGCGCCGTTAAACCAGTTCGCCTTGACGATGAGGCGTCCGGTTCCGG
TGCCGGCGCTAGCTCCGGCTCCAGCTCCAGTAGTGGCGGCGGACGCAGTG
GCTTCGGCGCCGCCACGGAAGCGGCGGCAGGTCATCGAGGACAGCGACGA
CGACGGCGACGAAAGTGGAACGTTTGCCGCCGCCCTGCGGAATGCGGCTG
CTGCCGCCCGAGCCGCACGACCAGGAGAGAGCGAATCAATTGATCTGACC
AATGAGGGTGCAGCAGAACTCCTCGATTTAGCGAGAGGAGCCGACGCATT
GCCGGCATCGAAGTCGGATGGCGTCCGCGACGCAAAGAGCGAATCGTCTT
CGTGGCCGGAAAATGGCAAGGGGGGCCGGAAGGCAATTGCCGTCGAGTCG
GAGTCAGACGACGAGGAGGAGGCGGACAGCGAAGGCTCCGACAACGACGA
CAAAGGCGGCAGGCGTTACGGCGGGGGCAGCAGCGACGGGGAGGAGGACG
CACTGGAGGCGCAGGCACGGGAGGTGCTCGACAATTGCACCCGCCTCTCT
GAGCGGCTCATGGCGTGTATGGCCCGTTGGGCCGCCCCAACGCCGCCGCC
TGCCGCGCTGCCCCCTCTTAGCGCTTCACCGGGCGCTGTTTCGAAAGGCG
GCTGCGGCGGCGGCGGCGATGGCATTGGCGGCGCTGGCGATGACGGCAGC
ACCGGTAGCTGCGCAGCCGGCAACGGCGAGACCGGTGGCGGAGACGCTGA
GCAAGCGACGCTTGCGGCGGCGGCAGCGGGAAGCATAGCCGGAGGTGACG
GTGGCGGCGCGGCTGCTGCCCCTGTGGCCGCCGCCGCCGGCGCTGCTGCT
GTGGTGCAGCACGGGGCTCTCAACCTCGAGTGCGTGGGCGACGCAGCGAG
CGACGACGATGGCGGCTTGGCGGTAGTGACGGCGGCGGACGTGACCGAGG
CGTGTGACTCGCTCGTGGAGCTCAACTCGTACCAGGTGAGGTGTTTGTTG
CCATCCTGTACGTTGTTAAAAGTAGTTGAATTCTGGCGCCTTTCTTTGTT
TCGCGAGTGCAGCCGATGCCGCTTCATCGTGTGCAGTTCGCCCCAAGATG
AATCGCGGTACGTTTTCCATGGCTCGTTCCATCGTCGCCTTCTGCCTGGC
CTAGGTGCTTTTCTGTCTGTGTATCTGTCTGTTGGCTTTCTGTTTTGCGG
TAAGCTTCGCCCAGGGGTCCATCCCTTCACCGCCGTCACCCGTGGTCGAC
CTTCCTTCCCGCCCACCCGCCCGCCTCCTTTGTTGCCTGCTTGCGTACCA
TCAACTCTCAATCCGTTCCTTCCTCTTCCTTTGTTTCCGCTCTTTTTCTC
AGCTGGCAGGCGTGAACTGGATGCATGTGCTCTACCACCTCGAGGTGAAC
GGCGTCCTGGCAGACGAGATGGGGCTCGGAAAGACGGTCCAGACCATCGC
ATTCTTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6142:2..3008+

>mRNA_P-wetherbeei_contig6142.1.1 ID=mRNA_P-wetherbeei_contig6142.1.1|Name=mRNA_P-wetherbeei_contig6142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2040bp|location=Sequence derived from alignment at P-wetherbeei_contig6142:2..3008+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTACCAAAAGTGGCCGCCCCGCCGGCCAGCGGGTGGCTCGAGAA
GCGGCAGCCGCTGGCTATGACGGAGATGGAGCGGCGTTGCAACATCGAAG
TCGCCAAACAGCAGAAAAAGGCCTTCAGGGCCGGCATGGGTGGGCAGGCC
CCTTCCTCCAAGCAGCCCGGAGGGAAGAAGGGTGGTGGCGGCGGCGGCGG
CAGGAAGGTCCGCGGCGGCGGCGGTGCATCGAAAAGAAAGCGGAAGCAAG
AGTGGGAGAGCGACGACGGGGAGGAAGATGGCGACTATTATGGGGAAAGC
TCTGAGGAGGACGAGGACAACAACGACAATGACTTCGGAAGCAACGGCGG
CGGGAGCCGGGCGAAGCGCACCAAGGTCACTGGGAGCGAGAAGACTGTCC
GAAACGGGAAGGGCCGGGGTGTCAAAGGGAAGATGGGCAAGGAGGGCGCT
GCGGCGAGTGGAGCGTCAAAGAAGAGGAAGGCGCAGCGGCGGGCGGCGAG
CGGCAGCGGGGAGAGCGATGAGGACAGTTTTGACGAGAGCGCGGAGGAGA
GCGACCATTCCATCGATCTCTTGAATGATGACGACGAGGACAGCAATGGT
GGCGGCAGTGGTGGCGGCCGCGATGACACCGGCGCCGGCGCCGGTGGGCG
GGAGGGCGGTGGCGGCACAAGCGGCAGTGGCCACAGCGGCGCAGCGGGCC
AAAACGGCAGCGAAAAGGAGCGCGGGTGGCTCGTTAGTGCCGGGTCTGCA
GCGTCAGCGGCGGCGGCATCCGCAGCGGCAACAGCCAGTCCGAGCTCCAA
CAGTCCGTTAACCCCTGTAGGTCGCGGCCTCATTGACGGGGCCGTCGCTG
CTGGTACCTCGCTGGCATTCACGGCGGATTCCGAGATTGCATGGGCCTTT
GGAGGATCGTTGGATGTGCCGATCGGCCCGCCGTTGAAGAGGACCGCCGC
CACGGCGCCGTTAAACCAGTTCGCCTTGACGATGAGGCGTCCGGTTCCGG
TGCCGGCGCTAGCTCCGGCTCCAGCTCCAGTAGTGGCGGCGGACGCAGTG
GCTTCGGCGCCGCCACGGAAGCGGCGGCAGGTCATCGAGGACAGCGACGA
CGACGGCGACGAAAGTGGAACGTTTGCCGCCGCCCTGCGGAATGCGGCTG
CTGCCGCCCGAGCCGCACGACCAGGAGAGAGCGAATCAATTGATCTGACC
AATGAGGGTGCAGCAGAACTCCTCGATTTAGCGAGAGGAGCCGACGCATT
GCCGGCATCGAAGTCGGATGGCGTCCGCGACGCAAAGAGCGAATCGTCTT
CGTGGCCGGAAAATGGCAAGGGGGGCCGGAAGGCAATTGCCGTCGAGTCG
GAGTCAGACGACGAGGAGGAGGCGGACAGCGAAGGCTCCGACAACGACGA
CAAAGGCGGCAGGCGTTACGGCGGGGGCAGCAGCGACGGGGAGGAGGACG
CACTGGAGGCGCAGGCACGGGAGGTGCTCGACAATTGCACCCGCCTCTCT
GAGCGGCTCATGGCGTGTATGGCCCGTTGGGCCGCCCCAACGCCGCCGCC
TGCCGCGCTGCCCCCTCTTAGCGCTTCACCGGGCGCTGTTTCGAAAGGCG
GCTGCGGCGGCGGCGGCGATGGCATTGGCGGCGCTGGCGATGACGGCAGC
ACCGGTAGCTGCGCAGCCGGCAACGGCGAGACCGGTGGCGGAGACGCTGA
GCAAGCGACGCTTGCGGCGGCGGCAGCGGGAAGCATAGCCGGAGGTGACG
GTGGCGGCGCGGCTGCTGCCCCTGTGGCCGCCGCCGCCGGCGCTGCTGCT
GTGGTGCAGCACGGGGCTCTCAACCTCGAGTGCGTGGGCGACGCAGCGAG
CGACGACGATGGCGGCTTGGCGGTAGTGACGGCGGCGGACGTGACCGAGG
CGTGTGACTCGCTCGTGGAGCTCAACTCGTACCAGCTGGCAGGCGTGAAC
TGGATGCATGTGCTCTACCACCTCGAGGTGAACGGCGTCCTGGCAGACGA
GATGGGGCTCGGAAAGACGGTCCAGACCATCGCATTCTTT
back to top