mRNA_P-wetherbeei_contig613.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig613.7.1
Unique NamemRNA_P-wetherbeei_contig613.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig613.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig613contigP-wetherbeei_contig613:7893..9391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1499
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001910.1
Cds size843
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.7240138-UTR-P-wetherbeei_contig613:7892..83561683186890.7240138-UTR-P-wetherbeei_contig613:7892..8356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig613 7893..8356 -
1683186890.7554874-UTR-P-wetherbeei_contig613:9199..93911683186890.7554874-UTR-P-wetherbeei_contig613:9199..9391Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig613 9200..9391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.7408957-CDS-P-wetherbeei_contig613:8356..91991683186890.7408957-CDS-P-wetherbeei_contig613:8356..9199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig613 8357..9199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig613.7.1prot_P-wetherbeei_contig613.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig613 8357..9199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig613.7.1

>prot_P-wetherbeei_contig613.7.1 ID=prot_P-wetherbeei_contig613.7.1|Name=mRNA_P-wetherbeei_contig613.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=281bp
MVASAEGVAAATLATLENIVCRVVYLRGGAARHASTMGVAGKGAKPGAPP
PDAASVPLPAPRLTLSSSNLNMCAQRLVPGLAAVGYHQSAEDPAAIEKGA
GAERWGNVLRTRLDDTCLACAAALAEPSVILLGCLSRPAEVEGLRNFWEG
AVARHTGLVLHIYGGFGSGSCVGSSGGDGGDGGSGSGRGNVRRVGGVTAV
SPGSLRRCGHYCVVTLAPVPRLKDHEDSGDGGGVGGWRVTSAELRRTAQG
RLDDDGSDDEDGERPKASGETAARVRCGQL*
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mRNA from alignment at P-wetherbeei_contig613:7893..9391-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig613.7.1 ID=mRNA_P-wetherbeei_contig613.7.1|Name=mRNA_P-wetherbeei_contig613.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1499bp|location=Sequence derived from alignment at P-wetherbeei_contig613:7893..9391- (Phaeothamnion wetherbeei SAG_119_79)
CTCGACGACGTCGATCTGAAGTCGGCGTCGGAACTGGCGGAGGAAATCGT
CTCGCGGCCTCTCGCCCCGGGCGCCGAAGAGTTCGACCTGATTGTCGTGT
CCAGCCTCGGCGGCAACTGCCAAGTGCAATGCCAGAGTAGCGACGGCGGC
AGCAGTGAGGGCGCCGCTTCTCAAGCACCGCCATCGATTGCAATGGTAGC
GAGCGCAGAGGGCGTCGCAGCAGCCACTCTGGCCACTCTCGAAAACATCG
TCTGCCGTGTGGTATACTTGCGAGGCGGAGCCGCTCGGCATGCCAGTACG
ATGGGCGTTGCGGGGAAAGGTGCAAAACCCGGTGCTCCGCCGCCAGATGC
GGCATCAGTGCCTTTGCCGGCCCCGCGCCTGACGCTGAGCAGCAGCAACT
TGAACATGTGCGCGCAGCGCCTTGTGCCGGGATTAGCCGCCGTGGGTTAC
CACCAATCGGCGGAAGATCCCGCGGCCATAGAAAAGGGAGCTGGGGCAGA
GCGATGGGGCAACGTGTTGCGAACGCGCCTGGACGACACCTGCCTCGCGT
GCGCCGCCGCGCTCGCAGAGCCATCGGTCATCCTACTCGGCTGCCTTTCT
CGCCCCGCCGAGGTGGAGGGTCTTCGGAACTTCTGGGAGGGCGCAGTGGC
ACGGCATACGGGATTGGTTCTGCACATCTACGGCGGCTTCGGTAGCGGCA
GTTGCGTTGGCTCCAGCGGCGGTGATGGCGGCGACGGCGGCAGTGGCAGC
GGCCGTGGTAATGTACGGCGAGTGGGCGGCGTGACGGCTGTCTCGCCGGG
GTCGCTGCGGCGTTGCGGACATTACTGCGTTGTAACACTTGCCCCAGTCC
CAAGATTAAAAGATCACGAAGACAGCGGCGATGGCGGCGGCGTTGGTGGC
TGGCGGGTGACGTCGGCGGAGCTGCGAAGGACGGCGCAGGGCCGCCTGGA
CGACGACGGGTCAGACGACGAAGACGGTGAGAGACCTAAAGCTTCAGGAG
AAACCGCGGCACGCGTCCGATGCGGGCAACTTTAACTCATTCCCCTTCAT
GACCGTTGTTTACCCCCCCTTCTTCACGAGTTAGAATCTGTCAAATGTGC
TGCGGTGACGTTGCCTTTTCAAGCACAGCTTGCAGAGGAGAAGGCATGCT
TCAAACAGTCTAAATTGGCGCTGCAAGTTTGCTCTTAGTTGTGCATCTCC
TGAGCTGGACGGTCGTAGGTGCGTTAAACATGTGGAGTCGATTTTCTGTC
TCATCACTGAGTCCATCAAATCGCAAGACGACACAAATTCAGCTAGACAA
ACGAGGAGTTGGCGAAACAGGGGAACACGGGGACTTCTTGATCTAATATT
TTATCCTCGCGGCGAGCACTTCCAGTTGCCTCCCGCGCTCCATCTCTTTT
TCCTCTTCTAAAGAGAGCTGTCGAGCTCGGTTCTCCAACTTTCGTAACCG
CTGCACCTGCGTCCGAGGGGACAAGGCGCCGAAGGCACGCATGACGGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig613:7893..9391-

>mRNA_P-wetherbeei_contig613.7.1 ID=mRNA_P-wetherbeei_contig613.7.1|Name=mRNA_P-wetherbeei_contig613.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=843bp|location=Sequence derived from alignment at P-wetherbeei_contig613:7893..9391- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAGCGAGCGCAGAGGGCGTCGCAGCAGCCACTCTGGCCACTCTCGA
AAACATCGTCTGCCGTGTGGTATACTTGCGAGGCGGAGCCGCTCGGCATG
CCAGTACGATGGGCGTTGCGGGGAAAGGTGCAAAACCCGGTGCTCCGCCG
CCAGATGCGGCATCAGTGCCTTTGCCGGCCCCGCGCCTGACGCTGAGCAG
CAGCAACTTGAACATGTGCGCGCAGCGCCTTGTGCCGGGATTAGCCGCCG
TGGGTTACCACCAATCGGCGGAAGATCCCGCGGCCATAGAAAAGGGAGCT
GGGGCAGAGCGATGGGGCAACGTGTTGCGAACGCGCCTGGACGACACCTG
CCTCGCGTGCGCCGCCGCGCTCGCAGAGCCATCGGTCATCCTACTCGGCT
GCCTTTCTCGCCCCGCCGAGGTGGAGGGTCTTCGGAACTTCTGGGAGGGC
GCAGTGGCACGGCATACGGGATTGGTTCTGCACATCTACGGCGGCTTCGG
TAGCGGCAGTTGCGTTGGCTCCAGCGGCGGTGATGGCGGCGACGGCGGCA
GTGGCAGCGGCCGTGGTAATGTACGGCGAGTGGGCGGCGTGACGGCTGTC
TCGCCGGGGTCGCTGCGGCGTTGCGGACATTACTGCGTTGTAACACTTGC
CCCAGTCCCAAGATTAAAAGATCACGAAGACAGCGGCGATGGCGGCGGCG
TTGGTGGCTGGCGGGTGACGTCGGCGGAGCTGCGAAGGACGGCGCAGGGC
CGCCTGGACGACGACGGGTCAGACGACGAAGACGGTGAGAGACCTAAAGC
TTCAGGAGAAACCGCGGCACGCGTCCGATGCGGGCAACTTTAA
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