mRNA_P-wetherbeei_contig6129.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A835Z3I3_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I3_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.890e-22 Identity = 118/428 (27.57%), Postives = 174/428 (40.65%), Query Frame = 1
Query: 1441 GSCSDYLVLDVADAKVLR--DGSSGAAGETVSLIWPWRRPPLLQGASLFAAVLAGVPNATDDSASEVVKAGGSADAADAADALLMMALNVDFASCADELCPPENGRCGRPATLVSGSGDGIQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQ-----PGPGVVFALNGAASAAYHACDVELCC-WGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAAL-PAHLAAVAPL-LAAAVDGPTRGVSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKEEAAPASLAPVPG---------VCKVLL--GRLGLRQQEFVRGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFVRAQQPAGQGWEGDCG 2661
G ++ L L+ ADA ++ D G+ G S W + PPL L+ AT D +M+ V F C+ + CP G C ++ G+ +G+ V C+C+YG GG+ C +VS ALQA AL+L+NLA+ P+ A+ + GPG VF + GA+SA YH CD+ + C G+RY +Q+LD +S++S+A VA P + L PA V L + A+VDGP + ++++ ++ +R +S VP V VL+ G LR G L V TFA Q Y L HS WH+ + S Y+F+RA+Q W G G
Sbjct: 475 GGAAETLQLNTADADYVKFADSDDGSIG---SYQWFAQPPPLAGTVLTITVALSSKAIATFPQ-----------------DGAVMVQPMVSFTRCSSQACPQSKGSC----SVSMGTAEGVLVGTCYCKYGWGGEGCADRLVSTQTIALQAAALVLTNLAVVPSVVLAYRLRKVTDSAAGPGAVFGVAGASSALYHLCDIGIACIGGLRYGAIQSLDILFSYMSSAAVATYLAYWPPGTSYLVPALYTVVFSLFMLASVDGPVQAANVIIGFIIVGTLLVLSWGVQI----------------------------------------VRKATALKVASSTQTVPSTWMHCLRNAVVAVLVTPGHFDLRM--LACGVALLVAAMVTFALQGNVHYALTHSCWHVLSLASTYFFLRARQ-----WHGSDG 831
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.310e-16 Identity = 65/147 (44.22%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 1684 LMMALNVDFASCADELCPPENGRCGRPATLVSGSGDG-IQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQP---GPGVVFALNGAASAAYHACDVELCCWG--IRYSTLQALDFFYSFLSAATVAL 2106
L +A V F C +++CP G C GSGD + V+ C+C YG GG+ C VVS Q L+LSNLA+ PA A G P VV LNGAASA YH CD+EL C G + + +LQALDFF+SF S A + L
Sbjct: 1003 LGVAPEVTFRYCDEDVCPVGRGEC---RAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVL 1146
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: D8LS70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS70_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.640e-16 Identity = 65/147 (44.22%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 1684 LMMALNVDFASCADELCPPENGRCGRPATLVSGSGDG-IQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQP---GPGVVFALNGAASAAYHACDVELCCWG--IRYSTLQALDFFYSFLSAATVAL 2106
L +A V F C +++CP G C GSGD + V+ C+C YG GG+ C VVS Q L+LSNLA+ PA A G P VV LNGAASA YH CD+EL C G + + +LQALDFF+SF S A + L
Sbjct: 424 LGVAPEVTFRYCDEDVCPIGRGEC---RAARGGSGDDYVTVSKCYCFYGYGGEACGQRVVSYVSLLWQFCLLVLSNLAVVPAVRVALRLGLATGAAPAVVLGLNGAASAFYHMCDLELTCAGGMLSFHSLQALDFFFSFFSVAALVL 567
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A7N2REV1_QUELO (EGF-like domain-containing protein n=6 Tax=Quercus TaxID=3511 RepID=A0A7N2REV1_QUELO) HSP 1 Score: 66.2 bits (160), Expect = 2.800e-7 Identity = 69/273 (25.27%), Postives = 108/273 (39.56%), Query Frame = 1
Query: 1810 CWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAALPAHLAAVAPLLAAAVDGPTRGVSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKE----EAAPASLAPVPGVCKVLLGRLGLRQQEFVRGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFV 2616
C C GG C ++S + LQA+ L+ SN A A F V+F +G +SA YHACDV C + YSTLQ +DF+ SFL+ + ++ E A H AA A G TR ++++V + A + F+ +G E +S + G+ + R + G + + A ++ + +TYW+WHS WHIS+ SA++F+
Sbjct: 549 CSCDRNHGGFDCSVTLLSKAEQRLQAIFLIASNAAALLPAFKVFQQKAFAEWVIFMSSGISSALYHACDVGSWC-ALSYSTLQFMDFWLSFLAVVST-FVYLTIFSEPAKRTIHTAAAIITALLAERGATRSSNIIIVLSIGALAFLIGWLIQLCTRC--------------------------------KSFSFPVGSSLKITERWRSSKDQLLGLMMAIYRYF--RWGYVLLGLIAMSMAAISWTKEDGETYWIWHSIWHISIYTSAFFFI 785
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A2U1QG70_ARTAN (EGF-like domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QG70_ARTAN) HSP 1 Score: 64.7 bits (156), Expect = 4.890e-7 Identity = 71/298 (23.83%), Postives = 113/298 (37.92%), Query Frame = 1
Query: 1726 ELCPPENGRCGRPATLVSGSGDGIQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAALPAHLAAVAPLLAAAVDGPTRGVSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKEEAAPASLAPVPGVCKVLLGRLGLRQQEFV-RGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFV 2616
E CP + G +V SG I + CWC GG C +VS LQ+V+L+ SN A A A V++ +G +S YHACDV C + + LQ +DF+ SF++ + ++ + EA+ H A G TR ++V+V + A +P + K +L R Q FV G V + A +++ + ++YW WHS WH+S+ S+++F+
Sbjct: 135 ERCPRKCSSHGTCQDVVEMSGLAI-YSYCWCDRTHGGFDCSVELVSHRGHILQSVSLIASNAAFVFPAYWALRQKAFAEWVLYTSSGISSGLYHACDVGTWC-ALSFRVLQFMDFWLSFMAVVST-FVYLATIDEASKRTIHTVVAILTALMAETGATRSSNIVLVIAIGAIGLLAGWLIEFFARYKRGSFSAELLLNMLQRWQIKGW-----------------------------LPNLVKTVLKRF---QWFFVLAGFVALAMAAISWSLESTESYWFWHSMWHVSIYTSSFFFL 397
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A1R3GKJ4_9ROSI (EGF-like domain-containing protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3GKJ4_9ROSI) HSP 1 Score: 65.1 bits (157), Expect = 6.230e-7 Identity = 79/300 (26.33%), Postives = 121/300 (40.33%), Query Frame = 1
Query: 1726 ELCPPENGRCGRPATLVSGSGDGIQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAALPAH-LAAVAPLLAAAVDGPTRG--VSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKEEAAPASLAPVPGVCKVLLGRLGLRQQEFVRGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFV 2616
E CP + G T + G ++C C GG C VVS + Q + L+ SN A A A V+F +G SA YHACD++ C +R+S LQ +DF+ SF++ +V ++ + E + H + A++ L A +D PTR + LVVVA + A QE + + P+ V + K L G V G + + + A ++ Q +TYWLWHS WH+++ SA F+
Sbjct: 513 EDCPNQCSNHGICKTYQAAGGS-TSYSSCSCDRYHGGFDCSINVVSEEGQKWQKMLLVFSNAAALLPAFWALWKNAWAESVIFMASGVISAIYHACDIDWWC-ALRFSVLQFMDFWLSFMAVVSV-FVYLALISEQSKRTIHTIVAISTALIAVID-PTRALNIGLVVVAAILALLVGCL----------------------------------------QEYYT-----KHKQPSRQEQVIIIAKRLGGYYNWIY--LVLGFLFSSMAAISWRLQTRETYWLWHSLWHVAIYISALLFL 761
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A5N6PVZ4_9ASTR (EGF-like domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PVZ4_9ASTR) HSP 1 Score: 64.7 bits (156), Expect = 8.240e-7 Identity = 73/299 (24.41%), Postives = 113/299 (37.79%), Query Frame = 1
Query: 1726 ELCPPENGRCGRPATLVSGSGDGIQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAALPAHLAAVAPLLAA--AVDGPTRGVSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKEEAAPASLAPVPGVCKVLLGRLGLRQQEFVRGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFV 2616
E CP G +V SG + + CWC GG C +VS Q+V+L+ SN A A A V++ +G +S YHACDV C + + LQ +DF+ SF++ + ++ + E + H AV +L A A +GPTR ++V+V + A + K +L R R V G V V A +++ + D+YW WHS WH+S+ S++ F+
Sbjct: 493 ERCPRRCSSHGTCQNIVDMSGLSL-YSYCWCDRTHGGFDCSVEIVSHQGHIWQSVSLVASNAAFVFPAYWALRQKAFAEWVIYTSSGISSGLYHACDVGTWC-ALSFRVLQFMDFWLSFMAVVST-FVYLTDIDEGSKRTIH--AVVAILTALMAENGPTRSSNIVLVIAIGATGLLIGFFIEVLMHFRRFSFSVELLLNMLHRWQTIKEWCH----------------------------NLLKTILKRF--RWCFVVAGFVAVAVAAISWSLESTDSYWFWHSMWHVSIYTSSFLFI 756
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A2U1N816_ARTAN (EGF-like domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N816_ARTAN) HSP 1 Score: 64.7 bits (156), Expect = 1.010e-6 Identity = 69/297 (23.23%), Postives = 112/297 (37.71%), Query Frame = 1
Query: 1726 ELCPPENGRCGRPATLVSGSGDGIQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAALPAHLAAVAPLLAAAVDGPTRGVSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKEEAAPASLAPVPGVCKVLLGRLGLRQQEFVRGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFV 2616
E CP + G +V SG I + CWC GG C +VS LQ+V+L+ SN A A A V++ +G +S YHACDV C + + LQ +DF+ SF++ + ++ + EA+ H A G TR ++V+V + A +P + K +L R R + G V + A +++ + ++YW WHS WH+S+ S+++F+
Sbjct: 1179 ERCPRKCSSHGTCQDVVEMSGLAI-YSYCWCDRTHGGFDCSVELVSHRGHILQSVSLIASNAAFVFPAYWALRQKAFAEWVLYTSSGISSGLYHACDVGTWC-ALSFRVLQFMDFWLSFMAVVST-FVYLATIDEASKRTIHTVVAILTALMAETGATRSSNIVLVIAIGAIGLLAGWLIEFFARYKRGSFSAELLLNMLQRWQIKGW-----------------------------LPNLVKTVLKRF--RWFFVLAGFVALAMAAISWSLESTESYWFWHSMWHVSIYTSSFFFL 1441
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A6A4ZMC2_9STRA (EGF-like domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZMC2_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.000e-6 Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 1
Query: 1714 SCADELCPPENGRCGRPATLVSGSGDGIQVAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLS 2088
+C D +C P +G C +V + G+ V C C YG G CD + + P +A Q+ L+LSNLAI PAA +F +F G S+ YHACD+ C I Y LQ LDF +SF S
Sbjct: 1318 ACPDNMCGP-HGSC-----VVKETFQGLTVGTCVCIYGYSGTYCDTIYL-PHYQA-QSWFLILSNLAILPAAVLSFQHELYVESFLFLSLGILSSLYHACDLSWYCV-IEYRYLQKLDFIFSFNS 1433
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Match: A0A835CML1_9FABA (Transmembrane protein 8B n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CML1_9FABA) HSP 1 Score: 62.4 bits (150), Expect = 4.270e-6 Identity = 64/274 (23.36%), Postives = 109/274 (39.78%), Query Frame = 1
Query: 1801 VAACWCRYGRGGDRCDAVVVSPWLRALQAVALLLSNLAIAPAAAAAFAAGQPGPGVVFALNGAASAAYHACDVELCCWGIRYSTLQALDFFYSFLSAATVALCFVGAVPEAAALPAHLAAVAPLLAAAVDGPTRGVSLVVVALVCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGQEGFAIRLGKEEAAPASLAPVPG-VCKVLLGRLGLRQQEFV-RGSVLAVVGAGTFAFQRADTYWLWHSAWHISVMGSAYYFV 2616
++ C C GG C VVS Q++ L+ SN A A A ++F +G +SA YHACDV C + Y+ LQ +DF+ SF++ + ++ + EA H AV TR ++V+V ++ A + +G P SL + +C ++ L + FV G + + A ++ + ++TYW+WHS WHI++ S+++F+
Sbjct: 536 LSFCACDRDHGGFDCGIEVVSHQGHVRQSIFLIASNAAFILPAFWALRHKALAEWIIFTSSGISSALYHACDVGTWC-ALNYNVLQFMDFWLSFMAVVST-FVYLATISEAFKRAIHTVVAILTALMAVTKATRPSNIVLVIVIGAIGLLIGWLIELSAKY--------------------------------RSISFSIGFPLNFPYSLQAIKQWLCNLVQTLLRRYRWGFVLAGFAVLAMAATSWTLETSETYWIWHSFWHITIYTSSFFFL 775 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6129.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6129.1.2 >prot_P-wetherbeei_contig6129.1.2 ID=prot_P-wetherbeei_contig6129.1.2|Name=mRNA_P-wetherbeei_contig6129.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=922bp MAVAAADARQRCTGCHGRAKARGSWPFMQGSRCTARAAATPLYPAGSGWHback to top mRNA from alignment at P-wetherbeei_contig6129:20..3359- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6129.1.2 ID=mRNA_P-wetherbeei_contig6129.1.2|Name=mRNA_P-wetherbeei_contig6129.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3340bp|location=Sequence derived from alignment at P-wetherbeei_contig6129:20..3359- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6129:20..3359- >mRNA_P-wetherbeei_contig6129.1.2 ID=mRNA_P-wetherbeei_contig6129.1.2|Name=mRNA_P-wetherbeei_contig6129.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2766bp|location=Sequence derived from alignment at P-wetherbeei_contig6129:20..3359- (Phaeothamnion wetherbeei SAG_119_79)back to top |