mRNA_P-wetherbeei_contig6126.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6126.1.1
Unique NamemRNA_P-wetherbeei_contig6126.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: D8LSF3_ECTSI (40S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=2759 RepID=D8LSF3_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.460e-41
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRFRPKRD 258
            +RCASTAKAIPKDKAIKRFIVRNIVDASS RD+R+ASV+DNY LPKLY+KQYYCVEAAVHQRIVRSRS   R++R+PP R RPKRD
Sbjct:   21 VRCASTAKAIPKDKAIKRFIVRNIVDASSLRDIREASVFDNYALPKLYIKQYYCVEAAVHQRIVRSRSAETRRNRDPPVRHRPKRD 106
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A835YLU3_9STRA (40S ribosomal protein S26 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.200e-40
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRFRPKRD 258
            +RC STAKAIPKDKAIKRFIVRNIVDASS RDLR+ASVY NY LPKLY+KQYYCVEAAVHQRIVRSRS   R++REPP R RPKR+
Sbjct:   21 VRCVSTAKAIPKDKAIKRFIVRNIVDASSLRDLREASVYANYALPKLYIKQYYCVEAAVHQRIVRSRSAEARRNREPPARVRPKRE 106
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A7S3K046_9STRA (40S ribosomal protein S26 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K046_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.690e-37
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRFR 246
            +RC ST KAIPKDKAIKRF+VRNIVDASS RD+RDAS Y++Y LPKLY+KQYYC+EAAVHQRIVR RSR  RK+REPP R R
Sbjct:   21 VRCVSTGKAIPKDKAIKRFVVRNIVDASSMRDIRDASAYESYALPKLYIKQYYCIEAAVHQRIVRLRSRTERKNREPPMRRR 102
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A7S2SUN8_9STRA (40S ribosomal protein S26 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUN8_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.350e-37
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRFR 246
            +RCAST KAIPKDKAIKRFIVRNIVDASS RD+R+AS ++NY LPKLY+KQYY VEAAVHQRIVRSRS   R++REPP RFR
Sbjct:   35 VRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIREASAFENYALPKLYIKQYYSVEAAVHQRIVRSRSTENRRNREPPARFR 116
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A7S2MQP1_9STRA (40S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2MQP1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.450e-36
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRF 243
            +RCAST KAIPKDKAIKRFIVRNIVDASS RD+RDAS ++ Y LPK+Y+KQYYC+EAAVHQRIVRSRS   R++REPP RF
Sbjct:   44 VRCASTGKAIPKDKAIKRFIVRNIVDASSMRDIRDASAFEAYALPKIYIKQYYCIEAAVHQRIVRSRSIENRRNREPPARF 124
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A7S0GMG9_9STRA (40S ribosomal protein S26 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMG9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.560e-36
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPR 240
            +RCAST KAIPKDKAIKRFIVRNIVDASS RD+++AS YD+Y LPKLY+K YYCVEAAVHQRIVR RSR  RK R PPPR
Sbjct:   21 VRCASTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYDDYTLPKLYLKMYYCVEAAVHQRIVRGRSREGRKIRTPPPR 100
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A7S3MCB3_9STRA (40S ribosomal protein S26 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCB3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.150e-36
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRFRP 249
            +RC STAKAIPKDKAIKRF+VRNIVD+S+ RD++++S Y+NY LPKLY+KQYYC+EAAVHQRIVR RS L RK+R PP R RP
Sbjct:   21 VRCVSTAKAIPKDKAIKRFLVRNIVDSSALRDIKESSAYENYQLPKLYIKQYYCIEAAVHQRIVRVRSALDRKNRAPPVRVRP 103
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BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A448ZRF7_9STRA (40S ribosomal protein S26 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZRF7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 9.920e-35
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRF 243
            +RC ST KAIPKDKAIKRFIVRNIVDASS RD+++AS Y  Y LPKLY+K +YCVEAAVHQR+VR RSR  R+ R PPPRF
Sbjct:   21 VRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMFYCVEAAVHQRVVRGRSREGRRVRTPPPRF 101
[Close]
BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A067D0A6_SAPPC (40S ribosomal protein S26 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D0A6_SAPPC)

HSP 1 Score: 122 bits (306), Expect = 2.120e-34
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    7 CASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRFRPKR 255
            C STAK IPKDKAIKRF+VRN+VDAS+ RDL++ASVY++Y LPK+Y+K YY +EAA+HQRIVR RS   RK+REPP RFRPKR
Sbjct:   23 CVSTAKLIPKDKAIKRFVVRNMVDASAMRDLKEASVYESYALPKIYIKNYYSIEAAIHQRIVRVRSVDGRKNREPPARFRPKR 105
[Close]
BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Match: A0A1E7EXY9_9STRA (40S ribosomal protein S26 n=3 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1E7EXY9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.930e-34
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVKQYYCVEAAVHQRIVRSRSRLMRKSREPPPRF 243
            +RC ST KAIPKDKAIKRFIVRNIVDASS RD+++AS Y  Y LPKLY+K +YCVEAAVHQR+VR RS+  R+ R PPPRF
Sbjct:   21 VRCVSTGKAIPKDKAIKRFIVRNIVDASSLRDIKEASAYQEYQLPKLYLKMFYCVEAAVHQRVVRGRSKEGRRVRTPPPRF 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6126.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF3_ECTSI1.460e-4182.5640S ribosomal protein S26 n=3 Tax=Eukaryota TaxID=... [more]
A0A835YLU3_9STRA1.200e-4082.5640S ribosomal protein S26 n=1 Tax=Tribonema minus ... [more]
A0A7S3K046_9STRA1.690e-3778.0540S ribosomal protein S26 n=1 Tax=Aureoumbra lagun... [more]
A0A7S2SUN8_9STRA5.350e-3779.2740S ribosomal protein S26 n=1 Tax=Rhizochromulina ... [more]
A0A7S2MQP1_9STRA1.450e-3677.7840S ribosomal protein S26 n=4 Tax=Ochrophyta TaxID... [more]
A0A7S0GMG9_9STRA1.560e-3680.0040S ribosomal protein S26 n=1 Tax=Proboscia inermi... [more]
A0A7S3MCB3_9STRA3.150e-3673.4940S ribosomal protein S26 n=1 Tax=Spumella elongat... [more]
A0A448ZRF7_9STRA9.920e-3574.0740S ribosomal protein S26 n=2 Tax=Bacillariophyta ... [more]
A0A067D0A6_SAPPC2.120e-3472.2940S ribosomal protein S26 n=3 Tax=Saprolegniaceae ... [more]
A0A1E7EXY9_9STRA2.930e-3472.8440S ribosomal protein S26 n=3 Tax=Bacillariophycid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6126contigP-wetherbeei_contig6126:2..262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LSF3
Preferred nameRpS26
PFAMsRibosomal_S26e
Model size261
Max annot lvl2759|Eukaryota
KEGG rclassRC02396
KEGG koko:K02976,ko:K13379,ko:K18739
KEGG ReactionR09009
KEGG Pathwayko00520,ko03010,map00520,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010259,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030867,GO:0031090,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0042175,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0055044,GO:0071704,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue2.4e-42
EggNOG OGsCOG4830@1|root,KOG1768@2759|Eukaryota
EC5.4.99.30
Descriptionstructural constituent of ribosome
Cds size261
COG categoryJ
CAZyGT75
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03019,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.2894416-CDS-P-wetherbeei_contig6126:1..2621683186890.2894416-CDS-P-wetherbeei_contig6126:1..262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6126 2..262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6126.1.1prot_P-wetherbeei_contig6126.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6126 2..262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6126.1.1

>prot_P-wetherbeei_contig6126.1.1 ID=prot_P-wetherbeei_contig6126.1.1|Name=mRNA_P-wetherbeei_contig6126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
LRCASTAKAIPKDKAIKRFIVRNIVDASSQRDLRDASVYDNYNLPKLYVK
QYYCVEAAVHQRIVRSRSRLMRKSREPPPRFRPKRD*
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mRNA from alignment at P-wetherbeei_contig6126:2..262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6126.1.1 ID=mRNA_P-wetherbeei_contig6126.1.1|Name=mRNA_P-wetherbeei_contig6126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig6126:2..262+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAGGTGCGCCTCGACGGCCAAGGCCATCCCGAAGGACAAGGCGATCAA
GCGCTTCATCGTCCGCAACATCGTCGATGCCTCGTCGCAGCGCGATCTCC
GCGACGCCTCCGTCTACGATAATTACAACCTGCCCAAGCTTTACGTCAAG
CAATACTACTGCGTCGAGGCTGCCGTCCACCAGCGGATCGTGCGCTCGCG
CAGCCGCCTTATGCGGAAGAGCCGGGAGCCGCCGCCGCGTTTCCGGCCCA
AGCGGGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6126:2..262+

>mRNA_P-wetherbeei_contig6126.1.1 ID=mRNA_P-wetherbeei_contig6126.1.1|Name=mRNA_P-wetherbeei_contig6126.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig6126:2..262+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAGGTGCGCCTCGACGGCCAAGGCCATCCCGAAGGACAAGGCGATCAA
GCGCTTCATCGTCCGCAACATCGTCGATGCCTCGTCGCAGCGCGATCTCC
GCGACGCCTCCGTCTACGATAATTACAACCTGCCCAAGCTTTACGTCAAG
CAATACTACTGCGTCGAGGCTGCCGTCCACCAGCGGATCGTGCGCTCGCG
CAGCCGCCTTATGCGGAAGAGCCGGGAGCCGCCGCCGCGTTTCCGGCCCA
AGCGGGACTGA
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